Literature DB >> 22731701

Public domain databases for medicinal chemistry.

George Nicola1, Tiqing Liu, Michael K Gilson.   

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Year:  2012        PMID： 22731701      PMCID： PMC3427776          DOI： 10.1021/jm300501t

Source DB:  PubMed          Journal:  J Med Chem        ISSN： 0022-2623            Impact factor:   7.446


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  69 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  High-throughput screening of enzyme inhibitors: simultaneous determination of tight-binding inhibition constants and enzyme concentration.

Authors:  P Kuzmic; K C Elrod; L M Cregar; S Sideris; R Rai; J W Janc
Journal:  Anal Biochem       Date:  2000-11-01       Impact factor: 3.365

3.  A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening.

Authors:  Susan L McGovern; Emilia Caselli; Nikolaus Grigorieff; Brian K Shoichet
Journal:  J Med Chem       Date:  2002-04-11       Impact factor: 7.446

4.  Guide to Receptors and Channels (GRAC), 5th edition.

Authors:  Stephen P H Alexander; Alistair Mathie; John A Peters
Journal:  Br J Pharmacol       Date:  2011-11       Impact factor: 8.739

5.  BindingDB and ChEMBL: online compound databases for drug discovery.

Authors:  Anne Mai Wassermann; Jürgen Bajorath
Journal:  Expert Opin Drug Discov       Date:  2011-04-21       Impact factor: 6.098

6.  Comprehensive identification of "druggable" protein ligand binding sites.

Authors:  Jianghong An; Maxim Totrov; Ruben Abagyan
Journal:  Genome Inform       Date:  2004

7.  Comparative assessment of scoring functions on a diverse test set.

Authors:  Tiejun Cheng; Xun Li; Yan Li; Zhihai Liu; Renxiao Wang
Journal:  J Chem Inf Model       Date:  2009-04       Impact factor: 4.956

8.  Ensembl 2011.

Authors:  Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Yuan Chen; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Leo Gordon; Maurice Hendrix; Thibaut Hourlier; Nathan Johnson; Andreas Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Felix Kokocinski; Eugene Kulesha; Pontus Larsson; Ian Longden; William McLaren; Bert Overduin; Bethan Pritchard; Harpreet Singh Riat; Daniel Rios; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sobral; Giulietta Spudich; Y Amy Tang; Stephen Trevanion; Jana Vandrovcova; Albert J Vilella; Simon White; Steven P Wilder; Amonida Zadissa; Jorge Zamora; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; Jan Vogel; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

9.  PubChem's BioAssay Database.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A Shoemaker; Evan Bolton; Asta Gindulyte; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

10.  PID: the Pathway Interaction Database.

Authors:  Carl F Schaefer; Kira Anthony; Shiva Krupa; Jeffrey Buchoff; Matthew Day; Timo Hannay; Kenneth H Buetow
Journal:  Nucleic Acids Res       Date:  2008-10-02       Impact factor: 16.971
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  15 in total

1.  Consistency in drug response profiling.

Authors:  John Patrick Mpindi; Bhagwan Yadav; Päivi Östling; Prson Gautam; Disha Malani; Astrid Murumägi; Akira Hirasawa; Sara Kangaspeska; Krister Wennerberg; Olli Kallioniemi; Tero Aittokallio
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

Review 2.  Shifting from the single to the multitarget paradigm in drug discovery.

Authors:  José L Medina-Franco; Marc A Giulianotti; Gregory S Welmaker; Richard A Houghten
Journal:  Drug Discov Today       Date:  2013-01-20       Impact factor: 7.851

3.  Emerging topics in structure-based virtual screening.

Authors:  Giulio Rastelli
Journal:  Pharm Res       Date:  2013-03-07       Impact factor: 4.200

Review 4.  An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines.

Authors:  Andrea de Souza; Joshua A Bittker; David L Lahr; Steve Brudz; Simon Chatwin; Tudor I Oprea; Anna Waller; Jeremy J Yang; Noel Southall; Rajarshi Guha; Stephan C Schürer; Uma D Vempati; Mark R Southern; Eric S Dawson; Paul A Clemons; Thomas D Y Chung
Journal:  J Biomol Screen       Date:  2014-01-17

5.  The Brazilian compound library (BraCoLi) database: a repository of chemical and biological information for drug design.

Authors:  Gabriel Corrêa Veríssimo; Valtair Severino Dos Santos Júnior; Ingrid Ariela do Rosário de Almeida; Marina Sant'Anna Mitraud Ruas; Lukas Galuppo Coutinho; Renata Barbosa de Oliveira; Ricardo José Alves; Vinícius Gonçalves Maltarollo
Journal:  Mol Divers       Date:  2022-01-28       Impact factor: 2.943

6.  Docking of a novel DNA methyltransferase inhibitor identified from high-throughput screening: insights to unveil inhibitors in chemical databases.

Authors:  José L Medina-Franco; Jakyung Yoo
Journal:  Mol Divers       Date:  2013-02-28       Impact factor: 2.943

7.  The open access malaria box: a drug discovery catalyst for neglected diseases.

Authors:  Thomas Spangenberg; Jeremy N Burrows; Paul Kowalczyk; Simon McDonald; Timothy N C Wells; Paul Willis
Journal:  PLoS One       Date:  2013-06-17       Impact factor: 3.240

8.  SwissBioisostere: a database of molecular replacements for ligand design.

Authors:  Matthias Wirth; Vincent Zoete; Olivier Michielin; Wolfgang H B Sauer
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

9.  InChI in the wild: an assessment of InChIKey searching in Google.

Authors:  Christopher Southan
Journal:  J Cheminform       Date:  2013-02-11       Impact factor: 5.514

10.  Navigating the chemical space of dipeptidyl peptidase-4 inhibitors.

Authors:  Watshara Shoombuatong; Veda Prachayasittikul; Nuttapat Anuwongcharoen; Napat Songtawee; Teerawat Monnor; Supaluk Prachayasittikul; Virapong Prachayasittikul; Chanin Nantasenamat
Journal:  Drug Des Devel Ther       Date:  2015-08-10       Impact factor: 4.162
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