Literature DB >> 22728674

A reaction-diffusion model of CO2 influx into an oocyte.

Erkki Somersalo1, Rossana Occhipinti, Walter F Boron, Daniela Calvetti.   

Abstract

We have developed and implemented a novel mathematical model for simulating transients in surface pH (pH(S)) and intracellular pH (pH(i)) caused by the influx of carbon dioxide (CO(2)) into a Xenopus oocyte. These transients are important tools for studying gas channels. We assume that the oocyte is a sphere surrounded by a thin layer of unstirred fluid, the extracellular unconvected fluid (EUF), which is in turn surrounded by the well-stirred bulk extracellular fluid (BECF) that represents an infinite reservoir for all solutes. Here, we assume that the oocyte plasma membrane is permeable only to CO(2). In both the EUF and intracellular space, solute concentrations can change because of diffusion and reactions. The reactions are the slow equilibration of the CO(2) hydration-dehydration reactions and competing equilibria among carbonic acid (H(2)CO(3))/bicarbonate (HCO(3)(-)) and a multitude of non-CO(2)/HCO(3)(-) buffers. Mathematically, the model is described by a coupled system of reaction-diffusion equations that-assuming spherical radial symmetry-we solved using the method of lines with appropriate stiff solvers. In agreement with experimental data [Musa-Aziz et al. 2009, PNAS 106 5406-5411], the model predicts that exposing the cell to extracellular 1.5% CO(2)/10 mM HCO(3)(-) (pH 7.50) causes pH(i) to fall and pH(S) to rise rapidly to a peak and then decay. Moreover, the model provides insights into the competition between diffusion and reaction processes when we change the width of the EUF, membrane permeability to CO(2), native extra- and intracellular carbonic anhydrase-like activities, the non-CO(2)/HCO(3)(-) (intrinsic) intracellular buffering power, or mobility of intrinsic intracellular buffers.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22728674      PMCID: PMC3471386          DOI: 10.1016/j.jtbi.2012.06.016

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  38 in total

1.  Intrinsic H(+) ion mobility in the rabbit ventricular myocyte.

Authors:  R D Vaughan-Jones; B E Peercy; J P Keener; K W Spitzer
Journal:  J Physiol       Date:  2002-05-15       Impact factor: 5.182

2.  RATE OF HYDRATION OF CARBON DIOXIDE AND DEHYDRATION OF CARBONIC ACID AT 25 DEGREES.

Authors:  B H GIBBONS; J T EDSALL
Journal:  J Biol Chem       Date:  1963-10       Impact factor: 5.157

3.  Relief of autoinhibition of the electrogenic Na-HCO(3) [corrected] cotransporter NBCe1-B: role of IRBIT vs.amino-terminal truncation.

Authors:  Seong-Ki Lee; Walter F Boron; Mark D Parker
Journal:  Am J Physiol Cell Physiol       Date:  2011-10-19       Impact factor: 4.249

4.  Passive transport across bilayer lipid membranes: Overton continues to rule.

Authors:  Andreas Missner; Philipp Kügler; Yuri N Antonenko; Peter Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

5.  Unstirred layers in frog skin.

Authors:  J Dainty; C R House
Journal:  J Physiol       Date:  1966-01       Impact factor: 5.182

6.  Determination of ionic permeability coefficients of the plasma membrane of Xenopus laevis oocytes under voltage clamp.

Authors:  P F Costa; M G Emilio; P L Fernandes; H G Ferreira; K G Ferreira
Journal:  J Physiol       Date:  1989-06       Impact factor: 5.182

Review 7.  110 years of the Meyer-Overton rule: predicting membrane permeability of gases and other small compounds.

Authors:  Andreas Missner; Peter Pohl
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

8.  The role of carbonic anhydrase 9 in regulating extracellular and intracellular ph in three-dimensional tumor cell growths.

Authors:  Pawel Swietach; Shalini Patiar; Claudiu T Supuran; Adrian L Harris; Richard D Vaughan-Jones
Journal:  J Biol Chem       Date:  2009-05-19       Impact factor: 5.157

9.  Carbon dioxide transport through membranes.

Authors:  Andreas Missner; Philipp Kügler; Sapar M Saparov; Klaus Sommer; John C Mathai; Mark L Zeidel; Peter Pohl
Journal:  J Biol Chem       Date:  2008-07-09       Impact factor: 5.157

10.  Intracellular pH transients in squid giant axons caused by CO2, NH3, and metabolic inhibitors.

Authors:  W F Boron; P De Weer
Journal:  J Gen Physiol       Date:  1976-01       Impact factor: 4.086

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  17 in total

1.  Computer model of unstirred layer and intracellular pH changes. Determinants of unstirred layer pH.

Authors:  Roger Marrannes
Journal:  J Biol Phys       Date:  2013-04-07       Impact factor: 1.365

2.  Movement of NH₃ through the human urea transporter B: a new gas channel.

Authors:  R Ryan Geyer; Raif Musa-Aziz; Giray Enkavi; P Mahinthichaichan; Emad Tajkhorshid; Walter F Boron
Journal:  Am J Physiol Renal Physiol       Date:  2013-04-03

Review 3.  CO2 Sensing and CO2 Regulation of Stomatal Conductance: Advances and Open Questions.

Authors:  Cawas B Engineer; Mimi Hashimoto-Sugimoto; Juntaro Negi; Maria Israelsson-Nordström; Tamar Azoulay-Shemer; Wouter-Jan Rappel; Koh Iba; Julian I Schroeder
Journal:  Trends Plant Sci       Date:  2015-10-05       Impact factor: 18.313

4.  Na+/HCO3- Cotransporter NBCn2 Mediates HCO3- Reclamation in the Apical Membrane of Renal Proximal Tubules.

Authors:  Yi-Min Guo; Ying Liu; Mei Liu; Jin-Lin Wang; Zhang-Dong Xie; Kang-Jing Chen; Deng-Ke Wang; Rossana Occhipinti; Walter F Boron; Li-Ming Chen
Journal:  J Am Soc Nephrol       Date:  2017-03-09       Impact factor: 10.121

5.  Relative CO₂/NH₃ permeabilities of human RhAG, RhBG and RhCG.

Authors:  R Ryan Geyer; Mark D Parker; Ashley M Toye; Walter F Boron; Raif Musa-Aziz
Journal:  J Membr Biol       Date:  2013-12       Impact factor: 1.843

6.  Low levels of lipid oxidation radically increase the passive permeability of lipid bilayers.

Authors:  Kristina A Runas; Noah Malmstadt
Journal:  Soft Matter       Date:  2015-01-21       Impact factor: 3.679

Review 7.  Mathematical modeling of acid-base physiology.

Authors:  Rossana Occhipinti; Walter F Boron
Journal:  Prog Biophys Mol Biol       Date:  2015-01-22       Impact factor: 3.667

8.  Evidence from simultaneous intracellular- and surface-pH transients that carbonic anhydrase II enhances CO2 fluxes across Xenopus oocyte plasma membranes.

Authors:  Raif Musa-Aziz; Rossana Occhipinti; Walter F Boron
Journal:  Am J Physiol Cell Physiol       Date:  2014-06-25       Impact factor: 4.249

9.  Evidence from mathematical modeling that carbonic anhydrase II and IV enhance CO2 fluxes across Xenopus oocyte plasma membranes.

Authors:  Rossana Occhipinti; Raif Musa-Aziz; Walter F Boron
Journal:  Am J Physiol Cell Physiol       Date:  2014-06-25       Impact factor: 4.249

10.  Distinct Cellular Locations of Carbonic Anhydrases Mediate Carbon Dioxide Control of Stomatal Movements.

Authors:  Honghong Hu; Wouter-Jan Rappel; Rossana Occhipinti; Amber Ries; Maik Böhmer; Lei You; Chuanlei Xiao; Cawas B Engineer; Walter F Boron; Julian I Schroeder
Journal:  Plant Physiol       Date:  2015-08-04       Impact factor: 8.340

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