Literature DB >> 22726756

Designing proteins from simple motifs: opportunities in Top-Down Symmetric Deconstruction.

Michael Blaber1, Jihun Lee.   

Abstract

The purpose of this review is to describe the development of 'top-down' approaches to protein design. It will be argued that a diverse number of studies over the past decade, involving many investigators, and focused upon elucidating the role of symmetry in protein evolution and design, are converging into a novel top-down approach to protein design. Top-down design methodologies have successfully produced comparatively simple polypeptide 'building blocks' (typically comprising 40-60 amino acids) useful in generating complex protein architecture, and have produced compelling data in support of macro-evolutionary pathways of protein structure. Furthermore, a distillation of the experimental approaches utilized in such studies suggests the potential for method formalism, one that may accelerate future success in this field.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22726756     DOI: 10.1016/j.sbi.2012.05.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  9 in total

1.  Evolution of a protein folding nucleus.

Authors:  Xue Xia; Liam M Longo; Mason A Sutherland; Michael Blaber
Journal:  Protein Sci       Date:  2015-12-10       Impact factor: 6.725

2.  Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein.

Authors:  Liam M Longo; Jihun Lee; Michael Blaber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

Review 3.  Emergence of symmetric protein architecture from a simple peptide motif: evolutionary models.

Authors:  Michael Blaber; Jihun Lee; Liam Longo
Journal:  Cell Mol Life Sci       Date:  2012-07-13       Impact factor: 9.261

4.  Computational design of a self-assembling symmetrical β-propeller protein.

Authors:  Arnout R D Voet; Hiroki Noguchi; Christine Addy; David Simoncini; Daiki Terada; Satoru Unzai; Sam-Yong Park; Kam Y J Zhang; Jeremy R H Tame
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

5.  CODV-Ig, a universal bispecific tetravalent and multifunctional immunoglobulin format for medical applications.

Authors:  Anke Steinmetz; François Vallée; Christian Beil; Christian Lange; Nicolas Baurin; Jochen Beninga; Cécile Capdevila; Carsten Corvey; Alain Dupuy; Paul Ferrari; Alexey Rak; Peter Wonerow; Jochen Kruip; Vincent Mikol; Ercole Rao
Journal:  MAbs       Date:  2016-03-16       Impact factor: 5.857

6.  Protein evolution analysis of S-hydroxynitrile lyase by complete sequence design utilizing the INTMSAlign software.

Authors:  Shogo Nakano; Yasuhisa Asano
Journal:  Sci Rep       Date:  2015-02-03       Impact factor: 4.379

7.  Variable and Conserved Regions of Secondary Structure in the β-Trefoil Fold: Structure Versus Function.

Authors:  Michael Blaber
Journal:  Front Mol Biosci       Date:  2022-04-19

8.  Cooperative hydrophobic core interactions in the β-trefoil architecture.

Authors:  Michael Blaber
Journal:  Protein Sci       Date:  2021-03-16       Impact factor: 6.725

9.  How the Sequence of a Gene Specifies Structural Symmetry in Proteins.

Authors:  Xiaojuan Shen; Tongcheng Huang; Guanyu Wang; Guanglin Li
Journal:  PLoS One       Date:  2015-12-07       Impact factor: 3.240

  9 in total

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