| Literature DB >> 22726649 |
Jennifer K Quint1, Gavin C Donaldson, Nancy Wassef, John R Hurst, Michael Thomas, Jadwiga A Wedzicha.
Abstract
BACKGROUND: 25-hydroxyvitamin D deficiency is associated with COPD and increased susceptibility to infection in the general population.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22726649 PMCID: PMC3403978 DOI: 10.1186/1471-2466-12-28
Source DB: PubMed Journal: BMC Pulm Med ISSN: 1471-2466 Impact factor: 3.317
Primers for VDR polymorphisms
| PCR | Forward primer | Reverse primer |
|---|---|---|
| VDR | AGCTGGCCCTGGCACTGACTCTGCTCT | ATGGAAACACCTTGCTTCTTCTCCCTC |
| FokI | ||
| VDR | GGGACGATGAGGGATGGACAGAGC | GGAAAGGGGTTAGGTTGGACAGGA |
| TaqI | ||
| VDR | AACTTGCATGAGGAGGAGCATGTC | GGAGAGGAGCCTCTGTCCCATTTG |
| BsmI |
Baseline Characteristics of 97 patients
| COPD patients (n = 97) | |
|---|---|
| Age (years) | 71.8 (8.8) |
| FEV1 (litre) | 1.19 (0.54) |
| FEV1 (% predicted) | 50.3 (19.7) |
| FVC (litre) | 2.5 (0.84) |
| BMI (kgm-2) | 27.0 (6.0) |
| Pack years smoking | 50.7 (34.2) |
| SpO2 (%) on air | 95 (2) |
| 25-hydroxyvitamin D nmol/L | Median (IQR) |
| Summer | 41.3 (26.8 – 64.8) |
| Winter | 27.8 (19.4 – 44.4) |
| | Number (%) |
| Male | 61 (62.9) |
| Frequent exacerbators | 28 (28.9) |
| Current smokers | 25 (25.8) |
Figure 125-hydroxyvitamin D levels in COPD patients in summer and winter in those on and not on calcium and 25-hydroxyvitamin D supplementation. Data are presented as median, with the boxes representing the interquartile range and the whiskers representing SD. ○: extreme outliers.
Figure 225-hydroxyvitamin D levels in summer and winter in frequent and infrequent exacerbators. Data are presented as median, with the boxes representing the interquartile range and the whiskers representing SD. ○: extreme outliers.
Figure 3Adjusted partial residual plot of the relationship between 25-hydroxyvitamin D levels and (1) day length (hours), and (2) hours outdoors. The graphs show the effect of each variable on 25-hydroxyvitamin D independently of the other variable. The zero value is the annual average.
25-hydroxyvitamin D status and positivity for HRV at exacerbation
| 25-hydroxyvitamin | positive for HRV at exacerbation | Total | |
|---|---|---|---|
| D status | No | Yes | |
| Deficient | 4 (25.0%) | 7 (23.3%) | 11 |
| Insufficient | 10 (62.5%) | 19 (63.3%) | 29 |
| Sufficient | 2 (12.5%) | 4 (13.3%) | 6 |
| Total | 16 | 30 | 46 |
25-hydroxyvitamin D deficiency was defined as <25nmol/L, insufficiency 25 – 75nmol/L and sufficiency > 75nmol/L (conversion factor of 2.5 for nmol/L from ng/ml).
VDR polymorphisms and exacerbation frequency
| SNP | Genotype | Frequent exacerbators | Infrequent exacerbators (n = 68) | Chi squared |
|---|---|---|---|---|
| Rs1544410 | BB | 3 (10.7%) | 15 (22.1%) | |
| BsmI | Bb | 12 (42.9%) | 26 (38.2%) | 0.43 |
| | Bb | 13 (46.4%) | 27 (39.7%) | |
| HWE p value | | 0.93 | 0.08 | |
| | | (n = 26) | (n = 66) | |
| Rs731236 | TT | 10 (38.5%) | 24 (36.4%) | |
| TaqI | Tt | 13 (50%) | 29 (43.9%) | 0.64 |
| | Tt | 3 (11.5%) | 13 (19.7%) | |
| HWE p value | | 0.69 | 0.43 | |
| | | (n = 28) | (n = 68) | |
| Rs2228570 | FF | 10 (35.7%) | 21 (30.9%) | |
| FokI | Ff | 14 (50.0%) | 38 (55.9%) | 0.87 |
| | Ff | 4 (14.3%) | 9 (13.2%) | |
| HWE p value | 0.80 | 0.21 |