Literature DB >> 22726429

Membrane protein structure predictions for exploration.

Nick V Grishin1.   

Abstract

A daring experiment is performed. Using sequence alignments to predict contacts between residues in protein spatial structures, Hopf et al. are publishing untested de novo structure models for 11 transmembrane protein families. Will their models stand the test of time and hold up to experimentation? The prospects are excellent.
Copyright © 2012 Elsevier Inc. All rights reserved.

Entities:  

Year:  2012        PMID: 22726429      PMCID: PMC3688449          DOI: 10.1016/j.cell.2012.06.004

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  10 in total

1.  Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.

Authors:  Anthony A Fodor; Richard W Aldrich
Journal:  Proteins       Date:  2004-08-01

2.  HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment.

Authors:  Michael Remmert; Andreas Biegert; Andreas Hauser; Johannes Söding
Journal:  Nat Methods       Date:  2011-12-25       Impact factor: 28.547

Review 3.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 4.  Structural genomics plucks high-hanging membrane proteins.

Authors:  Edda Kloppmann; Marco Punta; Burkhard Rost
Journal:  Curr Opin Struct Biol       Date:  2012-05-21       Impact factor: 6.809

5.  Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

Authors:  I N Shindyalov; N A Kolchanov; C Sander
Journal:  Protein Eng       Date:  1994-03

6.  Critical assessment of methods of protein structure prediction (CASP)--round IX.

Authors:  John Moult; Krzysztof Fidelis; Andriy Kryshtafovych; Anna Tramontano
Journal:  Proteins       Date:  2011-10-14

7.  NMR structure determination for larger proteins using backbone-only data.

Authors:  Srivatsan Raman; Oliver F Lange; Paolo Rossi; Michael Tyka; Xu Wang; James Aramini; Gaohua Liu; Theresa A Ramelot; Alexander Eletsky; Thomas Szyperski; Michael A Kennedy; James Prestegard; Gaetano T Montelione; David Baker
Journal:  Science       Date:  2010-02-04       Impact factor: 47.728

8.  An E3 ligase possessing an iron-responsive hemerythrin domain is a regulator of iron homeostasis.

Authors:  Ameen A Salahudeen; Joel W Thompson; Julio C Ruiz; He-Wen Ma; Lisa N Kinch; Qiming Li; Nick V Grishin; Richard K Bruick
Journal:  Science       Date:  2009-09-17       Impact factor: 47.728

9.  Three-dimensional structures of membrane proteins from genomic sequencing.

Authors:  Thomas A Hopf; Lucy J Colwell; Robert Sheridan; Burkhard Rost; Chris Sander; Debora S Marks
Journal:  Cell       Date:  2012-05-10       Impact factor: 41.582

10.  Protein 3D structure computed from evolutionary sequence variation.

Authors:  Debora S Marks; Lucy J Colwell; Robert Sheridan; Thomas A Hopf; Andrea Pagnani; Riccardo Zecchina; Chris Sander
Journal:  PLoS One       Date:  2011-12-07       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.