Literature DB >> 22719719

1-[Bis(4-fluoro-phen-yl)meth-yl]-4-[2-(naphthalen-2-yl-oxy)eth-yl]piperazine.

Yan Zhong, Bin Wu.   

Abstract

In the title mol-ecule, C(29)H(28)F(2)N(2)O, the piperazine ring adopts a chair conformation with the pendant N-C bonds in equatorial orientations. The conformation of the N-C-C-O linkage is gauche [torsion angle = -64.6 (4)°] and the dihedral angle between the fluoro-benzene rings is 64.02 (15)°.

Entities:  

Year:  2012        PMID: 22719719      PMCID: PMC3379521          DOI: 10.1107/S1600536812024129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background to 1-[bis­(4-fluoro­phen­yl)meth­yl]piperazine derivatives, see: Wu et al. (2008 ▶); Dayananda et al. (2012 ▶); Dai et al. (2012 ▶).

Experimental

Crystal data

C29H28F2N2O M = 458.53 Monoclinic, a = 10.416 (2) Å b = 16.870 (3) Å c = 14.311 (3) Å β = 100.57 (3)° V = 2472.0 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 4802 measured reflections 4541 independent reflections 2743 reflections with I > 2σ(I) R int = 0.087 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.182 S = 1.01 4541 reflections 307 parameters 4 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024129/hb6811sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024129/hb6811Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024129/hb6811Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H28F2N2OF(000) = 968
Mr = 458.53Dx = 1.232 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.416 (2) ÅCell parameters from 25 reflections
b = 16.870 (3) Åθ = 10–13°
c = 14.311 (3) ŵ = 0.09 mm1
β = 100.57 (3)°T = 293 K
V = 2472.0 (9) Å3Block, colorless
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.087
Radiation source: fine-focus sealed tubeθmax = 25.4°, θmin = 1.9°
Graphite monochromatorh = 0→12
ω/2θ scansk = 0→20
4802 measured reflectionsl = −17→16
4541 independent reflections3 standard reflections every 200 reflections
2743 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1P)2 + 0.2P] where P = (Fo2 + 2Fc2)/3
4541 reflections(Δ/σ)max < 0.001
307 parametersΔρmax = 0.26 e Å3
4 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O0.27757 (19)0.41478 (11)0.47099 (15)0.0661 (6)
N10.2649 (2)0.58274 (13)0.52960 (17)0.0575 (6)
F10.90854 (19)0.59295 (13)0.96914 (15)0.0967 (7)
C10.1204 (3)0.22487 (16)0.3853 (2)0.0542 (7)
F20.4277 (2)1.05347 (11)0.74130 (15)0.0922 (7)
N20.4063 (2)0.68238 (13)0.67855 (16)0.0528 (6)
C20.0148 (3)0.19302 (19)0.3205 (2)0.0721 (9)
H2A−0.04480.22680.28400.087*
C3−0.0006 (4)0.1129 (2)0.3110 (3)0.0988 (13)
H3A−0.07070.09270.26790.119*
C40.0860 (4)0.0619 (2)0.3644 (4)0.1085 (15)
H4A0.07400.00750.35720.130*
C50.1889 (4)0.0902 (2)0.4273 (3)0.0888 (11)
H5A0.24640.05490.46330.107*
C60.2100 (3)0.17243 (17)0.4390 (2)0.0613 (8)
C70.3172 (3)0.20455 (18)0.5024 (2)0.0654 (8)
H7A0.37580.17050.53940.078*
C80.3365 (3)0.28384 (18)0.5104 (2)0.0625 (8)
H8A0.40910.30370.55120.075*
C90.2463 (3)0.33609 (16)0.45675 (19)0.0534 (7)
C100.1397 (3)0.30770 (16)0.3968 (2)0.0523 (7)
H10A0.07920.34280.36340.063*
C110.1892 (3)0.47098 (17)0.4185 (2)0.0688 (9)
H11A0.10650.46970.44050.083*
H11B0.17310.45730.35160.083*
C120.2474 (3)0.55314 (17)0.4322 (2)0.0694 (9)
H12A0.33150.55280.41230.083*
H12B0.19120.58960.39090.083*
C130.3933 (3)0.56131 (17)0.5841 (2)0.0598 (8)
H13A0.46070.58030.55110.072*
H13B0.40030.50400.58850.072*
C140.4152 (3)0.59602 (16)0.6829 (2)0.0569 (7)
H14A0.35030.57540.71710.068*
H14B0.50080.58060.71700.068*
C150.2747 (3)0.70173 (17)0.6280 (2)0.0624 (8)
H15A0.26350.75880.62570.075*
H15B0.21060.67950.66190.075*
C160.2528 (3)0.66947 (17)0.5293 (2)0.0648 (8)
H16A0.16630.68440.49640.078*
H16B0.31610.69230.49510.078*
C170.4344 (3)0.72010 (16)0.77297 (19)0.0544 (7)
H17A0.36470.70550.80730.065*
C180.5624 (3)0.69034 (16)0.82958 (19)0.0534 (7)
C190.6790 (3)0.6934 (2)0.7902 (2)0.0677 (9)
H19A0.67750.71730.73140.081*
C200.7921 (3)0.6614 (2)0.8381 (2)0.0739 (9)
H20A0.86720.66280.81170.089*
C210.7952 (3)0.62780 (19)0.9240 (2)0.0659 (8)
C220.6914 (3)0.62547 (17)0.9676 (2)0.0685 (9)
H22A0.69750.60361.02790.082*
C230.5704 (3)0.65809 (17)0.9176 (2)0.0625 (8)
H23A0.49680.65710.94580.075*
C240.4343 (3)0.80943 (16)0.76286 (19)0.0541 (7)
C250.3778 (3)0.85731 (18)0.8273 (2)0.0622 (8)
H25A0.34120.83340.87470.075*
C260.3776 (3)0.93915 (19)0.8193 (2)0.0686 (9)
H26A0.34190.97050.86150.082*
C270.4299 (3)0.97249 (18)0.7496 (2)0.0639 (8)
C280.4854 (4)0.93165 (17)0.6871 (2)0.0738 (9)
H28A0.52130.95740.64050.089*
C290.4875 (3)0.84671 (16)0.6948 (2)0.0694 (9)
H29A0.52570.81680.65270.083*
U11U22U33U12U13U23
O0.0676 (13)0.0462 (12)0.0759 (14)0.0018 (10)−0.0091 (11)−0.0051 (10)
N10.0629 (15)0.0381 (12)0.0640 (15)0.0030 (11)−0.0082 (12)−0.0007 (10)
F10.0811 (14)0.1069 (17)0.0887 (14)0.0046 (12)−0.0196 (11)0.0062 (12)
C10.0533 (16)0.0475 (17)0.0649 (18)0.0035 (13)0.0188 (14)−0.0039 (13)
F20.1064 (16)0.0490 (11)0.1124 (16)0.0025 (10)−0.0030 (12)−0.0074 (10)
N20.0521 (14)0.0410 (13)0.0625 (14)0.0018 (10)0.0027 (11)−0.0030 (11)
C20.069 (2)0.055 (2)0.090 (2)−0.0001 (16)0.0066 (18)−0.0102 (17)
C30.085 (3)0.065 (2)0.137 (4)−0.009 (2)−0.004 (3)−0.022 (2)
C40.108 (3)0.047 (2)0.159 (4)−0.004 (2)−0.004 (3)−0.011 (2)
C50.087 (3)0.051 (2)0.124 (3)0.0107 (19)0.007 (2)−0.001 (2)
C60.0568 (18)0.0496 (17)0.079 (2)0.0041 (14)0.0173 (16)−0.0012 (15)
C70.0619 (19)0.0530 (19)0.081 (2)0.0157 (15)0.0110 (17)0.0063 (15)
C80.0539 (18)0.062 (2)0.0681 (19)0.0056 (14)0.0009 (15)−0.0024 (15)
C90.0589 (17)0.0467 (17)0.0542 (16)0.0052 (13)0.0094 (14)−0.0032 (13)
C100.0531 (16)0.0460 (16)0.0564 (16)0.0065 (13)0.0065 (13)−0.0008 (13)
C110.078 (2)0.0483 (18)0.0691 (19)0.0024 (16)−0.0140 (16)−0.0005 (14)
C120.086 (2)0.0466 (17)0.067 (2)−0.0017 (16)−0.0093 (17)0.0013 (14)
C130.0586 (17)0.0437 (16)0.0726 (19)0.0031 (13)0.0000 (15)−0.0022 (14)
C140.0564 (17)0.0428 (16)0.0652 (18)0.0035 (13)−0.0052 (14)0.0007 (13)
C150.0629 (19)0.0409 (15)0.080 (2)0.0054 (13)0.0041 (16)−0.0024 (14)
C160.071 (2)0.0421 (16)0.073 (2)0.0080 (14)−0.0099 (16)0.0003 (14)
C170.0578 (17)0.0530 (17)0.0549 (17)−0.0052 (13)0.0171 (14)−0.0029 (13)
C180.0648 (18)0.0462 (16)0.0502 (16)−0.0079 (13)0.0130 (14)−0.0071 (12)
C190.064 (2)0.088 (2)0.0504 (17)−0.0104 (17)0.0069 (15)0.0033 (16)
C200.0564 (19)0.102 (3)0.060 (2)−0.0097 (18)0.0020 (15)−0.0002 (18)
C210.067 (2)0.064 (2)0.0599 (19)−0.0063 (16)−0.0058 (17)−0.0075 (16)
C220.098 (3)0.0520 (18)0.0523 (17)−0.0059 (17)0.0052 (18)0.0012 (14)
C230.081 (2)0.0505 (18)0.0587 (18)−0.0065 (16)0.0211 (16)−0.0028 (14)
C240.0537 (16)0.0503 (17)0.0581 (17)−0.0044 (13)0.0094 (13)−0.0080 (13)
C250.0598 (18)0.067 (2)0.0615 (18)0.0012 (15)0.0144 (14)−0.0040 (15)
C260.066 (2)0.062 (2)0.075 (2)0.0126 (16)0.0056 (17)−0.0190 (17)
C270.067 (2)0.0490 (18)0.069 (2)0.0003 (15)−0.0056 (16)−0.0108 (15)
C280.099 (3)0.0538 (19)0.068 (2)−0.0155 (18)0.0136 (19)−0.0032 (16)
C290.095 (2)0.0533 (18)0.0664 (19)−0.0074 (17)0.0318 (18)−0.0123 (15)
O—C91.373 (3)C13—C141.508 (4)
O—C111.434 (3)C13—H13A0.9700
N1—C121.461 (4)C13—H13B0.9700
N1—C131.465 (3)C14—H14A0.9700
N1—C161.468 (3)C14—H14B0.9700
F1—C211.370 (4)C15—C161.492 (4)
C1—C61.408 (4)C15—H15A0.9700
C1—C21.408 (4)C15—H15B0.9700
C1—C101.417 (4)C16—H16A0.9700
F2—C271.371 (3)C16—H16B0.9700
N2—C141.461 (3)C17—C181.513 (4)
N2—C151.465 (3)C17—C241.514 (4)
N2—C171.474 (3)C17—H17A0.9800
C2—C31.364 (5)C18—C231.360 (4)
C2—H2A0.9300C18—C191.431 (3)
C3—C41.373 (5)C19—C201.361 (4)
C3—H3A0.9300C19—H19A0.9300
C4—C51.353 (5)C20—C211.349 (4)
C4—H4A0.9300C20—H20A0.9300
C5—C61.410 (4)C21—C221.344 (4)
C5—H5A0.9300C22—C231.439 (3)
C6—C71.411 (4)C22—H22A0.9300
C7—C81.354 (4)C23—H23A0.9300
C7—H7A0.9300C24—C291.360 (4)
C8—C91.408 (4)C24—C251.431 (3)
C8—H8A0.9300C25—C261.385 (4)
C9—C101.360 (4)C25—H25A0.9300
C10—H10A0.9300C26—C271.345 (4)
C11—C121.511 (4)C26—H26A0.9300
C11—H11A0.9700C27—C281.341 (4)
C11—H11B0.9700C28—C291.437 (3)
C12—H12A0.9700C28—H28A0.9300
C12—H12B0.9700C29—H29A0.9300
C9—O—C11116.7 (2)N2—C14—H14B109.5
C12—N1—C13111.5 (2)C13—C14—H14B109.5
C12—N1—C16110.0 (2)H14A—C14—H14B108.1
C13—N1—C16108.5 (2)N2—C15—C16110.7 (2)
C6—C1—C2118.6 (3)N2—C15—H15A109.5
C6—C1—C10119.4 (3)C16—C15—H15A109.5
C2—C1—C10122.0 (3)N2—C15—H15B109.5
C14—N2—C15106.8 (2)C16—C15—H15B109.5
C14—N2—C17113.1 (2)H15A—C15—H15B108.1
C15—N2—C17111.6 (2)N1—C16—C15111.2 (2)
C3—C2—C1120.5 (3)N1—C16—H16A109.4
C3—C2—H2A119.8C15—C16—H16A109.4
C1—C2—H2A119.8N1—C16—H16B109.4
C2—C3—C4120.8 (4)C15—C16—H16B109.4
C2—C3—H3A119.6H16A—C16—H16B108.0
C4—C3—H3A119.6N2—C17—C18110.8 (2)
C5—C4—C3120.6 (4)N2—C17—C24110.2 (2)
C5—C4—H4A119.7C18—C17—C24111.5 (2)
C3—C4—H4A119.7N2—C17—H17A108.1
C4—C5—C6120.8 (3)C18—C17—H17A108.1
C4—C5—H5A119.6C24—C17—H17A108.1
C6—C5—H5A119.6C23—C18—C19117.8 (3)
C1—C6—C5118.7 (3)C23—C18—C17121.8 (2)
C1—C6—C7118.5 (3)C19—C18—C17120.3 (2)
C5—C6—C7122.8 (3)C20—C19—C18120.4 (3)
C8—C7—C6121.4 (3)C20—C19—H19A119.8
C8—C7—H7A119.3C18—C19—H19A119.8
C6—C7—H7A119.3C21—C20—C19120.0 (3)
C7—C8—C9119.9 (3)C21—C20—H20A120.0
C7—C8—H8A120.1C19—C20—H20A120.0
C9—C8—H8A120.1C22—C21—C20123.3 (3)
C10—C9—O125.3 (2)C22—C21—F1117.8 (3)
C10—C9—C8120.6 (3)C20—C21—F1119.0 (3)
O—C9—C8114.1 (2)C21—C22—C23117.6 (3)
C9—C10—C1120.2 (3)C21—C22—H22A121.2
C9—C10—H10A119.9C23—C22—H22A121.2
C1—C10—H10A119.9C18—C23—C22120.8 (3)
O—C11—C12109.6 (2)C18—C23—H23A119.6
O—C11—H11A109.8C22—C23—H23A119.6
C12—C11—H11A109.8C29—C24—C25118.0 (3)
O—C11—H11B109.8C29—C24—C17122.4 (2)
C12—C11—H11B109.8C25—C24—C17119.6 (3)
H11A—C11—H11B108.2C26—C25—C24120.3 (3)
N1—C12—C11114.4 (3)C26—C25—H25A119.9
N1—C12—H12A108.7C24—C25—H25A119.9
C11—C12—H12A108.7C27—C26—C25118.9 (3)
N1—C12—H12B108.7C27—C26—H26A120.6
C11—C12—H12B108.7C25—C26—H26A120.6
H12A—C12—H12B107.6C28—C27—C26124.3 (3)
N1—C13—C14111.7 (2)C28—C27—F2117.1 (3)
N1—C13—H13A109.3C26—C27—F2118.6 (3)
C14—C13—H13A109.3C27—C28—C29117.6 (3)
N1—C13—H13B109.3C27—C28—H28A121.2
C14—C13—H13B109.3C29—C28—H28A121.2
H13A—C13—H13B107.9C24—C29—C28120.9 (3)
N2—C14—C13110.5 (2)C24—C29—H29A119.5
N2—C14—H14A109.5C28—C29—H29A119.5
C13—C14—H14A109.5
C6—C1—C2—C30.7 (5)C13—N1—C16—C15−55.9 (3)
C10—C1—C2—C3179.8 (3)N2—C15—C16—N160.9 (3)
C1—C2—C3—C40.1 (6)C14—N2—C17—C1851.5 (3)
C2—C3—C4—C5−0.2 (7)C15—N2—C17—C18171.9 (2)
C3—C4—C5—C6−0.5 (7)C14—N2—C17—C24175.4 (2)
C2—C1—C6—C5−1.4 (4)C15—N2—C17—C24−64.1 (3)
C10—C1—C6—C5179.5 (3)N2—C17—C18—C23−125.1 (3)
C2—C1—C6—C7178.7 (3)C24—C17—C18—C23111.7 (3)
C10—C1—C6—C7−0.4 (4)N2—C17—C18—C1953.0 (3)
C4—C5—C6—C11.3 (6)C24—C17—C18—C19−70.1 (3)
C4—C5—C6—C7−178.8 (4)C23—C18—C19—C203.0 (4)
C1—C6—C7—C8−1.7 (5)C17—C18—C19—C20−175.2 (3)
C5—C6—C7—C8178.4 (3)C18—C19—C20—C21−1.1 (5)
C6—C7—C8—C91.9 (5)C19—C20—C21—C22−1.7 (5)
C11—O—C9—C100.5 (4)C19—C20—C21—F1177.2 (3)
C11—O—C9—C8−179.8 (3)C20—C21—C22—C232.4 (5)
C7—C8—C9—C100.1 (5)F1—C21—C22—C23−176.5 (2)
C7—C8—C9—O−179.7 (3)C19—C18—C23—C22−2.3 (4)
O—C9—C10—C1177.5 (2)C17—C18—C23—C22175.9 (3)
C8—C9—C10—C1−2.2 (4)C21—C22—C23—C18−0.3 (4)
C6—C1—C10—C92.3 (4)N2—C17—C24—C29−40.4 (4)
C2—C1—C10—C9−176.8 (3)C18—C17—C24—C2983.1 (3)
C9—O—C11—C12−172.2 (3)N2—C17—C24—C25140.3 (3)
C13—N1—C12—C1189.7 (3)C18—C17—C24—C25−96.2 (3)
C16—N1—C12—C11−149.9 (3)C29—C24—C25—C260.3 (4)
O—C11—C12—N1−64.6 (4)C17—C24—C25—C26179.6 (3)
C12—N1—C13—C14176.5 (2)C24—C25—C26—C270.7 (4)
C16—N1—C13—C1455.2 (3)C25—C26—C27—C28−1.3 (5)
C15—N2—C14—C1360.2 (3)C25—C26—C27—F2179.1 (3)
C17—N2—C14—C13−176.6 (2)C26—C27—C28—C290.8 (5)
N1—C13—C14—N2−59.4 (3)F2—C27—C28—C29−179.6 (3)
C14—N2—C15—C16−61.4 (3)C25—C24—C29—C28−0.8 (5)
C17—N2—C15—C16174.6 (2)C17—C24—C29—C28179.9 (3)
C12—N1—C16—C15−178.1 (3)C27—C28—C29—C240.3 (5)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-[Bis(4-fluoro-phen-yl)meth-yl]piperazin-1-ium bis-(trichloro-acetate) 0.4-hydrate.

Authors:  A S Dayananda; H S Yathirajan; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07

3.  1-[Bis(4-fluoro-phen-yl)meth-yl]-4-[2-(2-methyl-phen-oxy)eth-yl]piperazine.

Authors:  Zhao-Hui Dai; Yan Zhong; Bin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.