Literature DB >> 22719703

5-(4-Fluoro-phen-yl)-3-[5-methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazol-4-yl]-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Bakr F Abdel-Wahab, Ehab Abdel-Latif, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(20)H(19)FN(6)S, the pyrazole ring has an envelope conformation, with the methine C atom being the flap atom. The dihedral angle between the least-squares plane through the pyrazole and triazole rings is 7.59 (9)°, and the triazole and attached benzene ring form a dihedral angle of 74.79 (9)°. The thio-urea group is coplanar with the pyrazole ring [N-N-C-S torsion angle = -179.93 (11)°], which enables the formation of an intra-molecular N-H⋯N hydrogen bond. In the crystal, inversion-related mol-ecules associate via N-H⋯S hydrogen bonds and eight-membered {⋯HNCS}(2) synthons feature in the crystal packing. These synthons are connected into supra-molecular chains along the a axis via N-H⋯F hydrogen bonds, and the chains are consolidated into layers in the ab plane via C-H⋯S and C-H⋯F contacts.

Entities:  

Year:  2012        PMID: 22719703      PMCID: PMC3379505          DOI: 10.1107/S1600536812024245

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazolyl-1,2,3-triazoles, see: Abdel-Wahab et al. (2012a ▶); Booth & Ross (1982 ▶); Curran (1982 ▶). For a related pyrazolyl-1,2,3-triazole structure, see: Abdel-Wahab et al. (2012b ▶).

Experimental

Crystal data

C20H19FN6S M = 394.47 Monoclinic, a = 9.4388 (4) Å b = 6.5476 (3) Å c = 32.1483 (18) Å β = 91.288 (4)° V = 1986.31 (17) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 100 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.855, T max = 1.000 7765 measured reflections 4551 independent reflections 3809 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.109 S = 1.02 4551 reflections 263 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812024245/su2439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024245/su2439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024245/su2439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19FN6SF(000) = 824
Mr = 394.47Dx = 1.319 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3598 reflections
a = 9.4388 (4) Åθ = 2.2–27.5°
b = 6.5476 (3) ŵ = 0.19 mm1
c = 32.1483 (18) ÅT = 100 K
β = 91.288 (4)°Prism, light-brown
V = 1986.31 (17) Å30.40 × 0.30 × 0.20 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4551 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3809 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.027
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.5°
ω scansh = −11→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −8→8
Tmin = 0.855, Tmax = 1.000l = −23→41
7765 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.045P)2 + 1.138P] where P = (Fo2 + 2Fc2)/3
4551 reflections(Δ/σ)max = 0.002
263 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.32997 (4)1.28074 (6)0.507140 (13)0.01661 (12)
F1−0.23235 (10)1.32770 (17)0.39047 (3)0.0253 (3)
N10.53882 (15)1.2902 (2)0.45302 (5)0.0181 (3)
N20.38250 (13)1.0266 (2)0.44567 (4)0.0137 (3)
N30.45951 (13)0.9562 (2)0.41184 (4)0.0145 (3)
N40.40790 (15)0.4715 (2)0.35943 (5)0.0212 (3)
N50.47668 (16)0.3904 (2)0.32855 (5)0.0224 (3)
N60.57249 (14)0.5319 (2)0.31626 (4)0.0161 (3)
C10.42324 (16)1.1970 (2)0.46636 (5)0.0139 (3)
C20.25153 (16)0.9101 (2)0.45166 (5)0.0139 (3)
H20.23930.87890.48180.017*
C30.28474 (17)0.7137 (3)0.42742 (5)0.0162 (3)
H3A0.31460.60170.44630.019*
H3B0.20230.66840.41020.019*
C40.40479 (16)0.7836 (3)0.40082 (5)0.0145 (3)
C50.12296 (16)1.0241 (2)0.43419 (5)0.0136 (3)
C60.13589 (17)1.1894 (3)0.40729 (5)0.0170 (3)
H60.22721.23300.39920.020*
C70.01603 (17)1.2911 (3)0.39217 (5)0.0183 (4)
H70.02411.40390.37380.022*
C8−0.11438 (17)1.2240 (3)0.40457 (5)0.0177 (4)
C9−0.13193 (17)1.0592 (3)0.43024 (5)0.0200 (4)
H9−0.22381.01480.43760.024*
C10−0.01149 (17)0.9592 (3)0.44518 (5)0.0176 (3)
H10−0.02100.84500.46310.021*
C110.45981 (17)0.6634 (3)0.36697 (5)0.0157 (3)
C120.56581 (17)0.7042 (3)0.33933 (5)0.0158 (3)
C130.65699 (19)0.8859 (3)0.33351 (6)0.0245 (4)
H13A0.69110.88800.30490.037*
H13B0.73800.87990.35310.037*
H13C0.60211.01000.33870.037*
C140.66475 (17)0.4832 (3)0.28258 (5)0.0167 (3)
C150.77454 (18)0.3469 (3)0.28951 (5)0.0204 (4)
H150.79170.29130.31650.025*
C160.85941 (19)0.2924 (3)0.25663 (6)0.0229 (4)
H160.93540.19950.26130.027*
C170.83530 (18)0.3714 (3)0.21690 (5)0.0207 (4)
C180.72555 (19)0.5103 (3)0.21112 (6)0.0260 (4)
H180.70920.56850.18440.031*
C190.63922 (19)0.5658 (3)0.24361 (5)0.0234 (4)
H190.56350.65940.23910.028*
C200.9250 (2)0.3050 (3)0.18119 (6)0.0324 (5)
H20A1.01080.23750.19200.049*
H20B0.95140.42470.16480.049*
H20C0.87100.20960.16350.049*
H1N0.5662 (19)1.407 (3)0.4648 (6)0.020 (5)*
H2N0.574 (2)1.255 (3)0.4297 (7)0.027 (6)*
U11U22U33U12U13U23
S10.0194 (2)0.0157 (2)0.0149 (2)−0.00300 (17)0.00448 (15)−0.00283 (16)
F10.0177 (5)0.0359 (6)0.0223 (5)0.0063 (5)−0.0003 (4)0.0081 (5)
N10.0174 (7)0.0180 (8)0.0191 (8)−0.0041 (6)0.0050 (6)−0.0068 (6)
N20.0125 (6)0.0151 (7)0.0137 (7)−0.0008 (5)0.0024 (5)−0.0030 (6)
N30.0149 (6)0.0154 (7)0.0132 (7)0.0016 (6)0.0022 (5)−0.0015 (6)
N40.0287 (8)0.0162 (7)0.0190 (7)−0.0038 (6)0.0068 (6)−0.0044 (6)
N50.0291 (8)0.0177 (7)0.0208 (8)−0.0071 (6)0.0080 (6)−0.0044 (6)
N60.0203 (7)0.0133 (7)0.0147 (7)−0.0028 (6)0.0027 (5)−0.0007 (6)
C10.0145 (7)0.0131 (8)0.0141 (8)0.0020 (6)−0.0026 (6)0.0011 (6)
C20.0159 (8)0.0118 (7)0.0142 (8)−0.0031 (6)0.0014 (6)0.0004 (6)
C30.0180 (8)0.0137 (8)0.0170 (8)−0.0008 (7)0.0025 (6)−0.0006 (7)
C40.0155 (7)0.0143 (8)0.0138 (8)0.0019 (6)0.0001 (6)0.0013 (6)
C50.0153 (7)0.0136 (8)0.0121 (7)−0.0015 (6)0.0011 (6)−0.0023 (6)
C60.0150 (8)0.0186 (8)0.0174 (8)−0.0042 (7)0.0019 (6)−0.0003 (7)
C70.0204 (8)0.0179 (8)0.0166 (8)−0.0010 (7)0.0004 (6)0.0041 (7)
C80.0148 (8)0.0230 (9)0.0152 (8)0.0036 (7)−0.0012 (6)0.0003 (7)
C90.0142 (8)0.0270 (10)0.0189 (8)−0.0034 (7)0.0033 (6)0.0027 (7)
C100.0182 (8)0.0187 (8)0.0161 (8)−0.0029 (7)0.0017 (6)0.0021 (7)
C110.0180 (8)0.0132 (8)0.0157 (8)−0.0006 (6)0.0001 (6)−0.0010 (6)
C120.0188 (8)0.0137 (8)0.0150 (8)0.0003 (7)0.0000 (6)−0.0032 (7)
C130.0273 (9)0.0177 (9)0.0290 (10)−0.0070 (8)0.0093 (8)−0.0067 (8)
C140.0204 (8)0.0151 (8)0.0148 (8)−0.0022 (7)0.0033 (6)−0.0033 (7)
C150.0252 (9)0.0213 (9)0.0148 (8)0.0012 (7)0.0008 (7)0.0016 (7)
C160.0236 (9)0.0239 (9)0.0214 (9)0.0059 (8)0.0021 (7)0.0015 (8)
C170.0239 (9)0.0207 (9)0.0177 (8)0.0020 (7)0.0039 (7)−0.0039 (7)
C180.0330 (10)0.0292 (10)0.0158 (9)0.0075 (8)0.0030 (7)0.0024 (8)
C190.0272 (9)0.0240 (9)0.0192 (9)0.0104 (8)0.0020 (7)0.0019 (8)
C200.0372 (11)0.0379 (12)0.0223 (10)0.0130 (9)0.0089 (8)0.0000 (9)
S1—C11.6873 (17)C7—C81.374 (2)
F1—C81.3724 (19)C7—H70.9500
N1—C11.329 (2)C8—C91.371 (2)
N1—H1N0.89 (2)C9—C101.389 (2)
N1—H2N0.86 (2)C9—H90.9500
N2—C11.350 (2)C10—H100.9500
N2—N31.3996 (18)C11—C121.379 (2)
N2—C21.469 (2)C12—C131.483 (2)
N3—C41.289 (2)C13—H13A0.9800
N4—N51.311 (2)C13—H13B0.9800
N4—C111.368 (2)C13—H13C0.9800
N5—N61.360 (2)C14—C191.381 (2)
N6—C121.352 (2)C14—C151.382 (2)
N6—C141.441 (2)C15—C161.387 (2)
C2—C51.521 (2)C15—H150.9500
C2—C31.539 (2)C16—C171.392 (2)
C2—H21.0000C16—H160.9500
C3—C41.506 (2)C17—C181.388 (3)
C3—H3A0.9900C17—C201.505 (2)
C3—H3B0.9900C18—C191.387 (2)
C4—C111.449 (2)C18—H180.9500
C5—C101.391 (2)C19—H190.9500
C5—C61.392 (2)C20—H20A0.9800
C6—C71.391 (2)C20—H20B0.9800
C6—H60.9500C20—H20C0.9800
C1—N1—H1N119.3 (12)C8—C9—C10118.08 (15)
C1—N1—H2N119.6 (14)C8—C9—H9121.0
H1N—N1—H2N119.4 (19)C10—C9—H9121.0
C1—N2—N3120.50 (13)C9—C10—C5120.82 (16)
C1—N2—C2126.55 (13)C9—C10—H10119.6
N3—N2—C2112.60 (12)C5—C10—H10119.6
C4—N3—N2106.88 (13)N4—C11—C12109.01 (14)
N5—N4—C11108.96 (14)N4—C11—C4119.94 (15)
N4—N5—N6106.73 (13)C12—C11—C4131.01 (16)
C12—N6—N5111.69 (13)N6—C12—C11103.62 (14)
C12—N6—C14129.31 (14)N6—C12—C13124.45 (15)
N5—N6—C14119.00 (13)C11—C12—C13131.93 (16)
N1—C1—N2116.57 (15)C12—C13—H13A109.5
N1—C1—S1123.20 (13)C12—C13—H13B109.5
N2—C1—S1120.23 (12)H13A—C13—H13B109.5
N2—C2—C5111.32 (13)C12—C13—H13C109.5
N2—C2—C3100.70 (12)H13A—C13—H13C109.5
C5—C2—C3113.13 (13)H13B—C13—H13C109.5
N2—C2—H2110.4C19—C14—C15120.95 (16)
C5—C2—H2110.4C19—C14—N6119.95 (15)
C3—C2—H2110.4C15—C14—N6119.05 (15)
C4—C3—C2101.42 (13)C14—C15—C16119.14 (16)
C4—C3—H3A111.5C14—C15—H15120.4
C2—C3—H3A111.5C16—C15—H15120.4
C4—C3—H3B111.5C15—C16—C17121.23 (17)
C2—C3—H3B111.5C15—C16—H16119.4
H3A—C3—H3B109.3C17—C16—H16119.4
N3—C4—C11122.33 (15)C18—C17—C16118.19 (16)
N3—C4—C3114.34 (14)C18—C17—C20121.20 (17)
C11—C4—C3123.26 (15)C16—C17—C20120.61 (16)
C10—C5—C6119.23 (15)C19—C18—C17121.34 (17)
C10—C5—C2118.75 (15)C19—C18—H18119.3
C6—C5—C2122.02 (14)C17—C18—H18119.3
C7—C6—C5120.48 (15)C14—C19—C18119.14 (17)
C7—C6—H6119.8C14—C19—H19120.4
C5—C6—H6119.8C18—C19—H19120.4
C8—C7—C6118.18 (16)C17—C20—H20A109.5
C8—C7—H7120.9C17—C20—H20B109.5
C6—C7—H7120.9H20A—C20—H20B109.5
C9—C8—F1118.69 (14)C17—C20—H20C109.5
C9—C8—C7123.19 (16)H20A—C20—H20C109.5
F1—C8—C7118.12 (15)H20B—C20—H20C109.5
C1—N2—N3—C4174.29 (14)C6—C5—C10—C9−1.1 (3)
C2—N2—N3—C4−12.04 (17)C2—C5—C10—C9179.58 (15)
C11—N4—N5—N6−0.27 (19)N5—N4—C11—C120.2 (2)
N4—N5—N6—C120.23 (19)N5—N4—C11—C4−177.76 (15)
N4—N5—N6—C14179.55 (14)N3—C4—C11—N4172.91 (15)
N3—N2—C1—N1−0.5 (2)C3—C4—C11—N4−3.8 (2)
C2—N2—C1—N1−173.19 (15)N3—C4—C11—C12−4.6 (3)
N3—N2—C1—S1−179.93 (11)C3—C4—C11—C12178.72 (17)
C2—N2—C1—S17.3 (2)N5—N6—C12—C11−0.08 (18)
C1—N2—C2—C572.6 (2)C14—N6—C12—C11−179.32 (16)
N3—N2—C2—C5−100.65 (15)N5—N6—C12—C13179.88 (16)
C1—N2—C2—C3−167.24 (15)C14—N6—C12—C130.6 (3)
N3—N2—C2—C319.54 (16)N4—C11—C12—N6−0.08 (18)
N2—C2—C3—C4−18.17 (15)C4—C11—C12—N6177.61 (17)
C5—C2—C3—C4100.72 (15)N4—C11—C12—C13179.96 (18)
N2—N3—C4—C11−178.76 (14)C4—C11—C12—C13−2.4 (3)
N2—N3—C4—C3−1.78 (18)C12—N6—C14—C19−76.7 (2)
C2—C3—C4—N313.53 (18)N5—N6—C14—C19104.1 (2)
C2—C3—C4—C11−169.51 (15)C12—N6—C14—C15106.0 (2)
N2—C2—C5—C10−165.88 (14)N5—N6—C14—C15−73.2 (2)
C3—C2—C5—C1081.57 (18)C19—C14—C15—C16−0.3 (3)
N2—C2—C5—C614.8 (2)N6—C14—C15—C16176.99 (16)
C3—C2—C5—C6−97.72 (18)C14—C15—C16—C17−0.4 (3)
C10—C5—C6—C71.2 (2)C15—C16—C17—C181.4 (3)
C2—C5—C6—C7−179.49 (15)C15—C16—C17—C20−177.77 (18)
C5—C6—C7—C80.1 (3)C16—C17—C18—C19−1.7 (3)
C6—C7—C8—C9−1.6 (3)C20—C17—C18—C19177.47 (19)
C6—C7—C8—F1178.40 (15)C15—C14—C19—C180.0 (3)
F1—C8—C9—C10−178.27 (15)N6—C14—C19—C18−177.25 (16)
C7—C8—C9—C101.7 (3)C17—C18—C19—C141.0 (3)
C8—C9—C10—C5−0.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.89 (2)2.432 (19)3.3159 (14)172.7 (16)
N1—H2N···F1ii0.86 (2)2.29 (2)2.9940 (18)138.9 (17)
N1—H2N···N30.86 (2)2.30 (2)2.6554 (19)104.9 (15)
C3—H3A···S1iii0.992.873.8390 (19)166
C9—H9···S1iv0.952.833.5595 (18)135
C15—H15···F1v0.952.413.2502 (19)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯S1i0.89 (2)2.432 (19)3.3159 (14)172.7 (16)
N1—H2N⋯F1ii0.86 (2)2.29 (2)2.9940 (18)138.9 (17)
N1—H2N⋯N30.86 (2)2.30 (2)2.6554 (19)104.9 (15)
C3—H3A⋯S1iii0.992.873.8390 (19)166
C9—H9⋯S1iv0.952.833.5595 (18)135
C15—H15⋯F1v0.952.413.2502 (19)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design and synthesis of new 4-pyrazolin-3-yl-1,2,3-triazoles and 1,2,3-triazol-4-yl-pyrazolin-1-ylthiazoles as potential antimicrobial agents.

Authors:  Bakr F Abdel-Wahab; Ehab Abdel-Latif; Hanan A Mohamed; Ghada E A Awad
Journal:  Eur J Med Chem       Date:  2012-03-23       Impact factor: 6.514

3.  4-{1-[4-(4-Bromo-phen-yl)-1,3-thia-zol-2-yl]-5-(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazol-3-yl}-5-methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazole.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31
  3 in total
  2 in total

1.  4-{1-[4-(4-Bromo-phen-yl)-1,3-thia-zol-2-yl]-5-(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazol-3-yl}-5-methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazole.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

2.  3-[5-Methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazol-4-yl]-N-phenyl-5-[4-(piperidin-1-yl)phen-yl]-4,5-dihydro-1H-pyrazole-1-carbothio-amide dimethyl-formamide hemisolvate.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02
  2 in total

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