Literature DB >> 22719694

2-(1H-Pyrrolo-[2,3-b]pyridin-2-yl)pyridine.

Ping-Hsin Huang, Yuh-Sheng Wen, Jiun-Yi Shen.   

Abstract

In the title compound, C(12)H(9)N(3), the dihedral angle between the pyridine and aza-indole rings is 6.20 (2)°. In the crystal, pairs of N-H⋯N hydrogen bonds link mol-ecules into inversion dimers.

Entities:  

Year:  2012        PMID: 22719694      PMCID: PMC3379496          DOI: 10.1107/S1600536812023690

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the production of luminescent organic/organometallic compounds, see: Liu et al. (2000 ▶). For related structures, see: Sakamoto et al. (1996 ▶); Huang et al. (2011 ▶).

Experimental

Crystal data

C12H9N3 M = 195.22 Monoclinic, a = 10.1416 (10) Å b = 13.7428 (14) Å c = 6.7395 (7) Å β = 94.331 (2)° V = 936.63 (16) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.55 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.938, T max = 0.996 7069 measured reflections 2154 independent reflections 1792 reflections with I > 2σa(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.145 S = 1.19 2154 reflections 136 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023690/rk2358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023690/rk2358Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023690/rk2358Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9N3F(000) = 408
Mr = 195.22Dx = 1.384 Mg m3Dm = 1.384 Mg m3Dm measured by not measured
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1871 reflections
a = 10.1416 (10) Åθ = 2.5–26.3°
b = 13.7428 (14) ŵ = 0.09 mm1
c = 6.7395 (7) ÅT = 200 K
β = 94.331 (2)°Needle, colourless
V = 936.63 (16) Å30.55 × 0.15 × 0.05 mm
Z = 4
Bruker SMART APEX CCD diffractometer2154 independent reflections
Radiation source: fine-focus sealed tube1792 reflections with I > 2σa(I)
Graphite monochromatorRint = 0.056
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −13→13
Tmin = 0.938, Tmax = 0.996k = −17→17
7069 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.19w = 1/[σ2(Fo2) + (0.0366P)2 + 0.2976P] where P = (Fo2 + 2Fc2)/3
2154 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.66995 (16)0.94501 (12)0.0034 (2)0.0382 (4)
N20.50593 (15)0.92225 (11)0.2357 (2)0.0324 (4)
H20.43940.95130.16840.039*
N30.27130 (16)0.91454 (12)0.4136 (2)0.0371 (4)
C10.7961 (2)0.92562 (16)−0.0253 (3)0.0418 (5)
H10.82960.9475−0.14540.050*
C20.8818 (2)0.87517 (16)0.1101 (3)0.0412 (5)
H2A0.97070.86390.08080.049*
C30.8377 (2)0.84179 (14)0.2859 (3)0.0391 (5)
H30.89480.80700.37900.047*
C40.70684 (19)0.86035 (13)0.3238 (3)0.0333 (4)
C50.62979 (18)0.91210 (13)0.1741 (3)0.0316 (4)
C60.62305 (19)0.84091 (13)0.4777 (3)0.0351 (5)
H60.64660.80730.59840.042*
C70.50115 (19)0.87982 (13)0.4198 (3)0.0323 (4)
C80.37880 (18)0.87873 (13)0.5192 (3)0.0327 (4)
C90.3725 (2)0.84151 (14)0.7108 (3)0.0411 (5)
H90.45010.81790.78280.049*
C100.2536 (2)0.83931 (15)0.7945 (3)0.0465 (6)
H100.24740.81380.92440.056*
C110.1429 (2)0.87497 (16)0.6860 (3)0.0460 (5)
H110.05860.87380.73880.055*
C120.1579 (2)0.91213 (16)0.5003 (3)0.0440 (5)
H120.08170.93800.42830.053*
U11U22U33U12U13U23
N10.0389 (9)0.0415 (9)0.0336 (9)0.0069 (7)−0.0001 (7)0.0021 (7)
N20.0326 (8)0.0329 (8)0.0306 (8)0.0031 (6)−0.0059 (6)0.0030 (7)
N30.0347 (9)0.0376 (9)0.0382 (9)−0.0009 (7)−0.0026 (7)0.0040 (7)
C10.0422 (11)0.0459 (12)0.0373 (11)0.0069 (9)0.0026 (9)0.0005 (9)
C20.0352 (11)0.0435 (12)0.0444 (12)0.0067 (9)−0.0013 (9)−0.0031 (10)
C30.0366 (11)0.0361 (11)0.0426 (12)0.0037 (8)−0.0104 (9)0.0006 (9)
C40.0379 (10)0.0259 (9)0.0341 (10)−0.0004 (8)−0.0101 (8)−0.0009 (8)
C50.0336 (10)0.0281 (9)0.0319 (10)0.0027 (8)−0.0050 (8)−0.0030 (8)
C60.0390 (11)0.0298 (10)0.0344 (10)−0.0013 (8)−0.0106 (8)0.0053 (8)
C70.0382 (10)0.0253 (9)0.0321 (10)−0.0037 (8)−0.0065 (8)0.0015 (8)
C80.0357 (10)0.0253 (9)0.0358 (10)−0.0038 (7)−0.0054 (8)−0.0002 (8)
C90.0453 (12)0.0367 (11)0.0401 (11)−0.0023 (9)−0.0050 (9)0.0062 (9)
C100.0566 (14)0.0433 (12)0.0397 (12)−0.0035 (10)0.0054 (10)0.0083 (10)
C110.0410 (12)0.0458 (12)0.0521 (13)−0.0032 (10)0.0094 (10)0.0023 (10)
C120.0393 (11)0.0444 (12)0.0473 (12)0.0000 (9)−0.0027 (9)0.0011 (10)
N1—C51.328 (2)C4—C61.415 (3)
N1—C11.335 (3)C4—C51.420 (3)
N2—C51.360 (2)C6—C71.376 (3)
N2—C71.376 (2)C6—H60.9500
N2—H20.8800C7—C81.454 (3)
N3—C121.329 (3)C8—C91.395 (3)
N3—C81.349 (2)C9—C101.369 (3)
C1—C21.396 (3)C9—H90.9500
C1—H10.9500C10—C111.383 (3)
C2—C31.377 (3)C10—H100.9500
C2—H2A0.9500C11—C121.371 (3)
C3—C41.393 (3)C11—H110.9500
C3—H30.9500C12—H120.9500
C5—N1—C1114.66 (18)C7—C6—H6126.4
C5—N2—C7109.17 (15)C4—C6—H6126.4
C5—N2—H2125.4N2—C7—C6109.17 (17)
C7—N2—H2125.4N2—C7—C8120.62 (16)
C12—N3—C8116.82 (17)C6—C7—C8130.19 (18)
N1—C1—C2124.1 (2)N3—C8—C9122.01 (18)
N1—C1—H1117.9N3—C8—C7115.95 (17)
C2—C1—H1117.9C9—C8—C7122.04 (18)
C3—C2—C1120.04 (19)C10—C9—C8119.5 (2)
C3—C2—H2A120.0C10—C9—H9120.2
C1—C2—H2A120.0C8—C9—H9120.2
C2—C3—C4118.22 (19)C9—C10—C11118.7 (2)
C2—C3—H3120.9C9—C10—H10120.7
C4—C3—H3120.9C11—C10—H10120.7
C3—C4—C6137.09 (19)C12—C11—C10118.2 (2)
C3—C4—C5116.24 (18)C12—C11—H11120.9
C6—C4—C5106.67 (17)C10—C11—H11120.9
N1—C5—N2125.47 (17)N3—C12—C11124.7 (2)
N1—C5—C4126.71 (18)N3—C12—H12117.6
N2—C5—C4107.81 (17)C11—C12—H12117.6
C7—C6—C4107.17 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2···N1i0.882.102.944 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N1i0.882.102.944 (2)162

Symmetry code: (i) .

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