| Literature DB >> 22719694 |
Ping-Hsin Huang, Yuh-Sheng Wen, Jiun-Yi Shen.
Abstract
In the title compound, C(12)H(9)N(3), the dihedral angle between the pyridine and aza-indole rings is 6.20 (2)°. In the crystal, pairs of N-H⋯N hydrogen bonds link mol-ecules into inversion dimers.Entities:
Year: 2012 PMID: 22719694 PMCID: PMC3379496 DOI: 10.1107/S1600536812023690
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9N3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1871 reflections |
| θ = 2.5–26.3° | |
| µ = 0.09 mm−1 | |
| β = 94.331 (2)° | Needle, colourless |
| 0.55 × 0.15 × 0.05 mm | |
| Bruker SMART APEX CCD diffractometer | 2154 independent reflections |
| Radiation source: fine-focus sealed tube | 1792 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 7069 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2154 reflections | (Δ/σ)max < 0.001 |
| 136 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.66995 (16) | 0.94501 (12) | 0.0034 (2) | 0.0382 (4) | |
| N2 | 0.50593 (15) | 0.92225 (11) | 0.2357 (2) | 0.0324 (4) | |
| H2 | 0.4394 | 0.9513 | 0.1684 | 0.039* | |
| N3 | 0.27130 (16) | 0.91454 (12) | 0.4136 (2) | 0.0371 (4) | |
| C1 | 0.7961 (2) | 0.92562 (16) | −0.0253 (3) | 0.0418 (5) | |
| H1 | 0.8296 | 0.9475 | −0.1454 | 0.050* | |
| C2 | 0.8818 (2) | 0.87517 (16) | 0.1101 (3) | 0.0412 (5) | |
| H2A | 0.9707 | 0.8639 | 0.0808 | 0.049* | |
| C3 | 0.8377 (2) | 0.84179 (14) | 0.2859 (3) | 0.0391 (5) | |
| H3 | 0.8948 | 0.8070 | 0.3790 | 0.047* | |
| C4 | 0.70684 (19) | 0.86035 (13) | 0.3238 (3) | 0.0333 (4) | |
| C5 | 0.62979 (18) | 0.91210 (13) | 0.1741 (3) | 0.0316 (4) | |
| C6 | 0.62305 (19) | 0.84091 (13) | 0.4777 (3) | 0.0351 (5) | |
| H6 | 0.6466 | 0.8073 | 0.5984 | 0.042* | |
| C7 | 0.50115 (19) | 0.87982 (13) | 0.4198 (3) | 0.0323 (4) | |
| C8 | 0.37880 (18) | 0.87873 (13) | 0.5192 (3) | 0.0327 (4) | |
| C9 | 0.3725 (2) | 0.84151 (14) | 0.7108 (3) | 0.0411 (5) | |
| H9 | 0.4501 | 0.8179 | 0.7828 | 0.049* | |
| C10 | 0.2536 (2) | 0.83931 (15) | 0.7945 (3) | 0.0465 (6) | |
| H10 | 0.2474 | 0.8138 | 0.9244 | 0.056* | |
| C11 | 0.1429 (2) | 0.87497 (16) | 0.6860 (3) | 0.0460 (5) | |
| H11 | 0.0586 | 0.8738 | 0.7388 | 0.055* | |
| C12 | 0.1579 (2) | 0.91213 (16) | 0.5003 (3) | 0.0440 (5) | |
| H12 | 0.0817 | 0.9380 | 0.4283 | 0.053* |
| N1 | 0.0389 (9) | 0.0415 (9) | 0.0336 (9) | 0.0069 (7) | −0.0001 (7) | 0.0021 (7) |
| N2 | 0.0326 (8) | 0.0329 (8) | 0.0306 (8) | 0.0031 (6) | −0.0059 (6) | 0.0030 (7) |
| N3 | 0.0347 (9) | 0.0376 (9) | 0.0382 (9) | −0.0009 (7) | −0.0026 (7) | 0.0040 (7) |
| C1 | 0.0422 (11) | 0.0459 (12) | 0.0373 (11) | 0.0069 (9) | 0.0026 (9) | 0.0005 (9) |
| C2 | 0.0352 (11) | 0.0435 (12) | 0.0444 (12) | 0.0067 (9) | −0.0013 (9) | −0.0031 (10) |
| C3 | 0.0366 (11) | 0.0361 (11) | 0.0426 (12) | 0.0037 (8) | −0.0104 (9) | 0.0006 (9) |
| C4 | 0.0379 (10) | 0.0259 (9) | 0.0341 (10) | −0.0004 (8) | −0.0101 (8) | −0.0009 (8) |
| C5 | 0.0336 (10) | 0.0281 (9) | 0.0319 (10) | 0.0027 (8) | −0.0050 (8) | −0.0030 (8) |
| C6 | 0.0390 (11) | 0.0298 (10) | 0.0344 (10) | −0.0013 (8) | −0.0106 (8) | 0.0053 (8) |
| C7 | 0.0382 (10) | 0.0253 (9) | 0.0321 (10) | −0.0037 (8) | −0.0065 (8) | 0.0015 (8) |
| C8 | 0.0357 (10) | 0.0253 (9) | 0.0358 (10) | −0.0038 (7) | −0.0054 (8) | −0.0002 (8) |
| C9 | 0.0453 (12) | 0.0367 (11) | 0.0401 (11) | −0.0023 (9) | −0.0050 (9) | 0.0062 (9) |
| C10 | 0.0566 (14) | 0.0433 (12) | 0.0397 (12) | −0.0035 (10) | 0.0054 (10) | 0.0083 (10) |
| C11 | 0.0410 (12) | 0.0458 (12) | 0.0521 (13) | −0.0032 (10) | 0.0094 (10) | 0.0023 (10) |
| C12 | 0.0393 (11) | 0.0444 (12) | 0.0473 (12) | 0.0000 (9) | −0.0027 (9) | 0.0011 (10) |
| N1—C5 | 1.328 (2) | C4—C6 | 1.415 (3) |
| N1—C1 | 1.335 (3) | C4—C5 | 1.420 (3) |
| N2—C5 | 1.360 (2) | C6—C7 | 1.376 (3) |
| N2—C7 | 1.376 (2) | C6—H6 | 0.9500 |
| N2—H2 | 0.8800 | C7—C8 | 1.454 (3) |
| N3—C12 | 1.329 (3) | C8—C9 | 1.395 (3) |
| N3—C8 | 1.349 (2) | C9—C10 | 1.369 (3) |
| C1—C2 | 1.396 (3) | C9—H9 | 0.9500 |
| C1—H1 | 0.9500 | C10—C11 | 1.383 (3) |
| C2—C3 | 1.377 (3) | C10—H10 | 0.9500 |
| C2—H2A | 0.9500 | C11—C12 | 1.371 (3) |
| C3—C4 | 1.393 (3) | C11—H11 | 0.9500 |
| C3—H3 | 0.9500 | C12—H12 | 0.9500 |
| C5—N1—C1 | 114.66 (18) | C7—C6—H6 | 126.4 |
| C5—N2—C7 | 109.17 (15) | C4—C6—H6 | 126.4 |
| C5—N2—H2 | 125.4 | N2—C7—C6 | 109.17 (17) |
| C7—N2—H2 | 125.4 | N2—C7—C8 | 120.62 (16) |
| C12—N3—C8 | 116.82 (17) | C6—C7—C8 | 130.19 (18) |
| N1—C1—C2 | 124.1 (2) | N3—C8—C9 | 122.01 (18) |
| N1—C1—H1 | 117.9 | N3—C8—C7 | 115.95 (17) |
| C2—C1—H1 | 117.9 | C9—C8—C7 | 122.04 (18) |
| C3—C2—C1 | 120.04 (19) | C10—C9—C8 | 119.5 (2) |
| C3—C2—H2A | 120.0 | C10—C9—H9 | 120.2 |
| C1—C2—H2A | 120.0 | C8—C9—H9 | 120.2 |
| C2—C3—C4 | 118.22 (19) | C9—C10—C11 | 118.7 (2) |
| C2—C3—H3 | 120.9 | C9—C10—H10 | 120.7 |
| C4—C3—H3 | 120.9 | C11—C10—H10 | 120.7 |
| C3—C4—C6 | 137.09 (19) | C12—C11—C10 | 118.2 (2) |
| C3—C4—C5 | 116.24 (18) | C12—C11—H11 | 120.9 |
| C6—C4—C5 | 106.67 (17) | C10—C11—H11 | 120.9 |
| N1—C5—N2 | 125.47 (17) | N3—C12—C11 | 124.7 (2) |
| N1—C5—C4 | 126.71 (18) | N3—C12—H12 | 117.6 |
| N2—C5—C4 | 107.81 (17) | C11—C12—H12 | 117.6 |
| C7—C6—C4 | 107.17 (17) |
| H··· | ||||
| N2—H2···N1i | 0.88 | 2.10 | 2.944 (2) | 162 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N1i | 0.88 | 2.10 | 2.944 (2) | 162 |
Symmetry code: (i) .