Literature DB >> 22719689

2-(3-Chloro-5,6-diphenyl-2,5-dihydro-1,2,4-triazin-5-yl)-2-methyl-propane-nitrile.

Ewa Wolińska, Zbigniew Karczmarzyk, Andrzej Rykowski, Zofia Urbańczyk-Lipkowska, Przemysław Kalicki.   

Abstract

The title compound, C(19)H(17)ClN(4), was obtained from the reaction of n class="Chemical">3-chloro-5,6-diphenyl-1,2,4-triazine with isobutyronitrile in the presence of lithium diisopropyl-amide as an unexpected product of covalent addition of isobutyronitrile carbanion to the C-5 atom of the 1,2,4-triazine ring. The 2,5-dihydro-1,2,4-triazine ring is essentially planar (r.m.s. deviation = 0.0059 Å) and the 5- and 6-phenyl substituents are inclined to its mean plane with dihedral angles of 89.97 (4) and 55.52 (5)°, respectively. Intra-molecular C-H⋯N inter-actions occur. In the crystal, mol-ecules related by a c-glide plane are linked into zigzag chains along [001] by N-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719689      PMCID: PMC3379491          DOI: 10.1107/S1600536812023252

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Hargaden & Guiry (2009 ▶); Konno et al. (1987 ▶); Rykowski et al. (2000 ▶). For the synthesis, see: Coeffard et al. (2009 ▶); Fujisawa et al. (1995 ▶). For a related structure, see: Ayato et al. (1981 ▶).

Experimental

Crystal data

C19H17ClN4 M = 336.82 Monoclinic, a = 8.2422 (1) Å b = 13.9124 (2) Å c = 15.4685 (3) Å β = 93.855 (1)° V = 1769.74 (5) Å3 Z = 4 Cu Kα radiation μ = 1.96 mm−1 T = 293 K 0.44 × 0.23 × 0.11 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.817, T max = 1.000 20671 measured reflections 3198 independent reflections 2957 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.110 S = 1.03 3198 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812023252/bt5925sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023252/bt5925Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023252/bt5925Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17ClN4F(000) = 704
Mr = 336.82Dx = 1.264 Mg m3
Monoclinic, P21/cMelting point: 456 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 8.2422 (1) ÅCell parameters from 9905 reflections
b = 13.9124 (2) Åθ = 5.4–67.7°
c = 15.4685 (3) ŵ = 1.96 mm1
β = 93.855 (1)°T = 293 K
V = 1769.74 (5) Å3Prism, colourless
Z = 40.44 × 0.23 × 0.11 mm
Bruker SMART APEXII CCD diffractometer3198 independent reflections
Radiation source: fine-focus sealed tube2957 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 68.1°, θmin = 4.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.817, Tmax = 1.000k = −12→16
20671 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0608P)2 + 0.3505P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3198 reflectionsΔρmax = 0.21 e Å3
221 parametersΔρmin = −0.28 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (3)
Experimental. 1H NMR (400 MHz, CDCl3) δ: 1.50 (s, 3H, CH3), 1.53 (s, 3H), 6.95–6.97 (m, 2H), 7.21–7.25 (m, 2H), 7.34–7.47 (m,4H), 7.70–7.72 (m, 2H), 8.25 (s, 1H); 13C NMR (50 MHz, CDCl3) δ: 22.6, 25.5, 39.0, 70.4, 124.0, 127.9, 128.5, 128.6, 128.7, 129.7, 130.0, 135.4, 140.7, 140.8, 147.5; HR MS ESI calculated for C19H17N4NaCl: 359.10340, found: 359.10469.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl30.34703 (6)0.12753 (4)0.01120 (3)0.07817 (19)
N10.63312 (16)0.25063 (9)0.18802 (7)0.0529 (3)
N20.54094 (19)0.22497 (10)0.11422 (8)0.0651 (4)
H20.538 (3)0.2666 (17)0.0696 (16)0.098*
N40.44978 (15)0.07957 (9)0.16785 (7)0.0505 (3)
N90.5113 (2)0.12362 (10)0.48082 (9)0.0693 (4)
C30.45641 (18)0.14300 (11)0.11027 (9)0.0510 (3)
C50.54108 (15)0.09677 (9)0.25203 (7)0.0391 (3)
C60.63422 (15)0.19302 (9)0.25246 (8)0.0425 (3)
C70.40539 (16)0.10027 (10)0.31926 (9)0.0446 (3)
C80.47297 (19)0.11233 (10)0.40948 (9)0.0498 (3)
C510.66526 (15)0.01512 (9)0.26417 (8)0.0432 (3)
C520.77159 (19)0.00305 (13)0.19886 (11)0.0624 (4)
H520.75900.04040.14900.094*
C530.8958 (2)−0.06387 (16)0.20727 (16)0.0840 (6)
H530.9659−0.07080.16300.126*
C540.9167 (2)−0.11954 (14)0.27919 (19)0.0848 (7)
H541.0026−0.16290.28530.127*
C550.8094 (2)−0.11095 (13)0.34268 (15)0.0773 (6)
H550.8205−0.15060.39110.116*
C560.6847 (2)−0.04408 (11)0.33588 (10)0.0562 (4)
H560.6136−0.03900.37980.084*
C610.72769 (17)0.22915 (10)0.33162 (8)0.0489 (3)
C620.6891 (2)0.31924 (12)0.36333 (10)0.0610 (4)
H620.60810.35570.33420.091*
C630.7696 (3)0.35509 (16)0.43739 (13)0.0800 (6)
H630.74180.41520.45820.120*
C640.8905 (3)0.3025 (2)0.48049 (13)0.0919 (7)
H640.94350.32630.53100.138*
C650.9325 (2)0.21470 (19)0.44865 (13)0.0859 (6)
H651.01600.17970.47720.129*
C660.85223 (19)0.17737 (14)0.37446 (11)0.0648 (4)
H660.88190.11770.35350.097*
C710.2966 (2)0.18857 (13)0.29982 (13)0.0668 (4)
H7110.24000.18130.24390.100*
H7120.36270.24540.30020.100*
H7130.21920.19410.34330.100*
C720.29850 (19)0.00935 (12)0.31542 (11)0.0597 (4)
H7210.24960.00140.25780.090*
H7220.21480.01570.35530.090*
H7230.3644−0.04570.33080.090*
U11U22U33U12U13U23
Cl30.0896 (3)0.0984 (4)0.0432 (2)−0.0087 (2)−0.0200 (2)0.01157 (19)
N10.0687 (7)0.0523 (7)0.0379 (6)−0.0075 (6)0.0044 (5)0.0062 (5)
N20.0957 (10)0.0610 (8)0.0373 (6)−0.0108 (7)−0.0056 (6)0.0144 (6)
N40.0542 (6)0.0599 (7)0.0363 (6)−0.0071 (5)−0.0053 (5)0.0048 (5)
N90.1083 (11)0.0611 (8)0.0406 (8)−0.0151 (7)0.0214 (7)−0.0087 (6)
C30.0568 (8)0.0615 (8)0.0342 (7)0.0031 (6)−0.0006 (6)0.0045 (6)
C50.0436 (6)0.0443 (7)0.0294 (6)−0.0012 (5)0.0020 (5)0.0027 (5)
C60.0458 (7)0.0463 (7)0.0359 (6)−0.0019 (5)0.0062 (5)0.0035 (5)
C70.0468 (7)0.0452 (7)0.0427 (7)0.0002 (5)0.0105 (5)0.0017 (5)
C80.0669 (9)0.0416 (7)0.0431 (8)−0.0056 (6)0.0199 (6)−0.0025 (5)
C510.0455 (7)0.0453 (7)0.0384 (6)0.0009 (5)0.0006 (5)−0.0068 (5)
C520.0567 (8)0.0755 (10)0.0561 (9)0.0013 (7)0.0128 (7)−0.0147 (8)
C530.0544 (9)0.0908 (14)0.1085 (17)0.0050 (9)0.0188 (10)−0.0426 (13)
C540.0555 (10)0.0640 (11)0.132 (2)0.0144 (8)−0.0152 (11)−0.0275 (12)
C550.0779 (12)0.0562 (9)0.0933 (14)0.0143 (8)−0.0274 (11)−0.0015 (9)
C560.0652 (9)0.0516 (8)0.0507 (8)0.0089 (7)−0.0041 (6)0.0021 (6)
C610.0508 (7)0.0578 (8)0.0384 (7)−0.0150 (6)0.0063 (5)0.0044 (6)
C620.0713 (10)0.0604 (9)0.0523 (8)−0.0177 (7)0.0117 (7)−0.0040 (7)
C630.0877 (13)0.0883 (13)0.0657 (11)−0.0331 (11)0.0168 (10)−0.0239 (10)
C640.0823 (13)0.137 (2)0.0561 (10)−0.0389 (14)0.0017 (9)−0.0277 (12)
C650.0641 (10)0.1296 (18)0.0616 (11)−0.0149 (11)−0.0145 (8)−0.0034 (12)
C660.0542 (8)0.0840 (11)0.0551 (9)−0.0092 (8)−0.0050 (7)−0.0005 (8)
C710.0556 (9)0.0645 (10)0.0818 (11)0.0150 (7)0.0167 (8)0.0069 (8)
C720.0584 (8)0.0620 (9)0.0602 (9)−0.0148 (7)0.0150 (7)−0.0023 (7)
Cl3—C31.7383 (14)C54—H540.9300
N1—C61.2787 (17)C55—C561.385 (2)
N1—N21.3752 (18)C55—H550.9300
N2—C31.336 (2)C56—H560.9300
N2—H20.90 (2)C61—C661.386 (2)
N4—C31.2577 (18)C61—C621.390 (2)
N4—C51.4790 (16)C62—C631.378 (2)
N9—C81.138 (2)C62—H620.9300
C5—C511.5321 (18)C63—C641.372 (3)
C5—C61.5433 (18)C63—H630.9300
C5—C71.5782 (17)C64—C651.371 (4)
C6—C611.4895 (18)C64—H640.9300
C7—C81.477 (2)C65—C661.387 (2)
C7—C711.539 (2)C65—H650.9300
C7—C721.5403 (19)C66—H660.9300
C51—C561.382 (2)C71—H7110.9600
C51—C521.3914 (19)C71—H7120.9600
C52—C531.383 (3)C71—H7130.9600
C52—H520.9300C72—H7210.9600
C53—C541.357 (3)C72—H7220.9600
C53—H530.9300C72—H7230.9600
C54—C551.370 (3)
C6—N1—N2117.32 (12)C54—C55—C56121.02 (19)
C3—N2—N1121.13 (12)C54—C55—H55119.5
C3—N2—H2121.8 (15)C56—C55—H55119.5
N1—N2—H2117.0 (15)C51—C56—C55120.44 (16)
C3—N4—C5117.79 (12)C51—C56—H56119.8
N4—C3—N2127.89 (14)C55—C56—H56119.8
N4—C3—Cl3119.52 (12)C66—C61—C62118.65 (15)
N2—C3—Cl3112.59 (10)C66—C61—C6122.90 (14)
N4—C5—C51106.50 (10)C62—C61—C6118.45 (14)
N4—C5—C6111.57 (10)C63—C62—C61120.73 (18)
C51—C5—C6108.35 (10)C63—C62—H62119.6
N4—C5—C7104.12 (10)C61—C62—H62119.6
C51—C5—C7116.06 (10)C64—C63—C62120.3 (2)
C6—C5—C7110.17 (10)C64—C63—H63119.9
N1—C6—C61113.92 (12)C62—C63—H63119.9
N1—C6—C5124.27 (12)C65—C64—C63119.56 (18)
C61—C6—C5121.74 (10)C65—C64—H64120.2
C8—C7—C71105.76 (12)C63—C64—H64120.2
C8—C7—C72107.95 (11)C64—C65—C66120.9 (2)
C71—C7—C72108.90 (12)C64—C65—H65119.6
C8—C7—C5112.78 (11)C66—C65—H65119.6
C71—C7—C5108.99 (11)C61—C66—C65119.87 (19)
C72—C7—C5112.22 (11)C61—C66—H66120.1
N9—C8—C7173.86 (17)C65—C66—H66120.1
C56—C51—C52117.77 (14)C7—C71—H711109.5
C56—C51—C5125.50 (12)C7—C71—H712109.5
C52—C51—C5116.66 (13)H711—C71—H712109.5
C53—C52—C51120.74 (18)C7—C71—H713109.5
C53—C52—H52119.6H711—C71—H713109.5
C51—C52—H52119.6H712—C71—H713109.5
C54—C53—C52120.91 (18)C7—C72—H721109.5
C54—C53—H53119.5C7—C72—H722109.5
C52—C53—H53119.5H721—C72—H722109.5
C53—C54—C55119.04 (16)C7—C72—H723109.5
C53—C54—H54120.5H721—C72—H723109.5
C55—C54—H54120.5H722—C72—H723109.5
C6—N1—N2—C3−0.1 (2)C6—C5—C51—C56112.84 (14)
C5—N4—C3—N22.1 (2)C7—C5—C51—C56−11.66 (19)
C5—N4—C3—Cl3−178.37 (10)N4—C5—C51—C5256.07 (15)
N1—N2—C3—N4−1.5 (3)C6—C5—C51—C52−64.08 (15)
N1—N2—C3—Cl3178.95 (12)C7—C5—C51—C52171.42 (12)
C3—N4—C5—C51−119.22 (14)C56—C51—C52—C53−2.2 (2)
C3—N4—C5—C6−1.18 (17)C5—C51—C52—C53175.00 (15)
C3—N4—C5—C7117.62 (13)C51—C52—C53—C540.2 (3)
N2—N1—C6—C61−176.07 (12)C52—C53—C54—C552.2 (3)
N2—N1—C6—C50.8 (2)C53—C54—C55—C56−2.5 (3)
N4—C5—C6—N1−0.21 (18)C52—C51—C56—C551.8 (2)
C51—C5—C6—N1116.72 (14)C5—C51—C56—C55−175.06 (14)
C7—C5—C6—N1−115.34 (14)C54—C55—C56—C510.5 (3)
N4—C5—C6—C61176.45 (12)N1—C6—C61—C66−125.41 (15)
C51—C5—C6—C61−66.62 (14)C5—C6—C61—C6657.61 (18)
C7—C5—C6—C6161.32 (15)N1—C6—C61—C6253.96 (17)
N4—C5—C7—C8177.18 (11)C5—C6—C61—C62−123.02 (14)
C51—C5—C7—C860.49 (15)C66—C61—C62—C63−2.0 (2)
C6—C5—C7—C8−63.07 (14)C6—C61—C62—C63178.61 (14)
N4—C5—C7—C71−65.69 (14)C61—C62—C63—C640.7 (3)
C51—C5—C7—C71177.63 (12)C62—C63—C64—C651.0 (3)
C6—C5—C7—C7154.07 (14)C63—C64—C65—C66−1.3 (3)
N4—C5—C7—C7255.01 (14)C62—C61—C66—C651.7 (2)
C51—C5—C7—C72−61.68 (15)C6—C61—C66—C65−178.98 (15)
C6—C5—C7—C72174.76 (11)C64—C65—C66—C610.0 (3)
N4—C5—C51—C56−127.01 (14)
D—H···AD—HH···AD···AD—H···A
C71—H711···N40.962.582.900 (2)100
C72—H721···N40.962.482.847 (2)103
N2—H2···N9i0.90 (2)2.06 (2)2.9474 (19)171 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C71—H711⋯N40.962.582.900 (2)100
C72—H721⋯N40.962.482.847 (2)103
N2—H2⋯N9i0.90 (2)2.06 (2)2.9474 (19)171 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Recent applications of oxazoline-containing ligands in asymmetric catalysis.

Authors:  Gráinne C Hargaden; Patrick J Guiry
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

3.  The synthesis of new oxazoline-containing bifunctional catalysts and their application in the addition of diethylzinc to aldehydes.

Authors:  Vincent Coeffard; Helge Müller-Bunz; Patrick J Guiry
Journal:  Org Biomol Chem       Date:  2009-03-12       Impact factor: 3.876

  3 in total

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