Literature DB >> 22719686

2-Amino-4-(4-fluoro-phen-yl)-6-meth-oxy-4H-benzo[h]chromene-3-carbonitrile.

Al-Anood M Al-Dies, Abdel-Galil E Amr, Ahmed M El-Agrody, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

In the title mol-ecule, C(21)H(15)FN(2)O(2), the dihedral angle between the fluoro-substituted benzene ring and the mean plane of the 4H-benzo[h]chromene ring system [maximum deviation = 0.109 (2) Å] is 83.35 (7)°. The pyran ring adopts a slight sofa conformation with the tertiary C(H) atom forming the flap. The meth-oxy group is slightly twisted from the attached benzene ring of the 4H-benzo[h]chromene moiety [C-O-C-C = -4.3 (3)°]. In the crystal, mol-ecules are linked by inter-molecular N-H⋯N hydrogen bonds into infinite wave-like chains along the b axis. The crystal packing is further stabilized by π-π inter-actions [centroid-centroid distance = 3.7713 (9) Å].

Entities:  

Year:  2012        PMID: 22719686      PMCID: PMC3379488          DOI: 10.1107/S1600536812023021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 4H-chromene derivatives, see: Sayed et al. (2000 ▶); Bedair et al. (2001 ▶); El-Agrody et al. (2000 ▶, 2002 ▶). For the chemical and pharmacological properties of 4H-chromene and fused 4H-chromene derivatives, see: El-Agrody et al. (2000 ▶); Abd-El-Aziz et al. (2004 ▶, 2007 ▶); Sabry et al. (2011 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H15FN2O2 M = 346.35 Monoclinic, a = 12.6336 (4) Å b = 11.9333 (3) Å c = 12.0471 (4) Å β = 113.581 (2)° V = 1664.56 (9) Å3 Z = 4 Cu Kα radiation μ = 0.81 mm−1 T = 296 K 0.88 × 0.68 × 0.06 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.537, T max = 0.953 11390 measured reflections 3199 independent reflections 2770 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.132 S = 1.05 3199 reflections 245 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023021/lh5476sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023021/lh5476Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812023021/lh5476Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15FN2O2F(000) = 720
Mr = 346.35Dx = 1.382 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 3014 reflections
a = 12.6336 (4) Åθ = 3.8–71.5°
b = 11.9333 (3) ŵ = 0.81 mm1
c = 12.0471 (4) ÅT = 296 K
β = 113.581 (2)°Plate, yellow
V = 1664.56 (9) Å30.88 × 0.68 × 0.06 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3199 independent reflections
Radiation source: fine-focus sealed tube2770 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
φ and ω scansθmax = 71.9°, θmin = 3.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→15
Tmin = 0.537, Tmax = 0.953k = −12→14
11390 measured reflectionsl = −12→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.132w = 1/[σ2(Fo2) + (0.0702P)2 + 0.3162P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3199 reflectionsΔρmax = 0.22 e Å3
245 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0030 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F11.08340 (11)0.92571 (13)0.19221 (15)0.0946 (5)
O10.59888 (10)0.46944 (9)0.14761 (10)0.0507 (3)
O20.85128 (13)0.37355 (11)−0.12356 (13)0.0677 (4)
N10.52279 (14)0.57508 (14)0.24812 (14)0.0569 (4)
N20.58458 (15)0.85793 (13)0.21110 (16)0.0666 (4)
C10.58225 (13)0.57477 (13)0.17674 (13)0.0442 (3)
C20.62297 (13)0.66625 (13)0.13969 (13)0.0439 (3)
C30.68193 (12)0.66037 (12)0.05215 (13)0.0416 (3)
H3A0.62740.6888−0.02620.050*
C40.70666 (12)0.53883 (12)0.03481 (12)0.0412 (3)
C50.66493 (12)0.45325 (12)0.07952 (13)0.0422 (3)
C60.68132 (12)0.33927 (13)0.05802 (13)0.0437 (3)
C70.63629 (15)0.24988 (14)0.10278 (16)0.0541 (4)
H7A0.59720.26500.15220.065*
C80.64953 (19)0.14210 (15)0.07431 (19)0.0656 (5)
H8A0.61910.08410.10400.079*
C90.70845 (18)0.11761 (15)0.00090 (19)0.0683 (5)
H9A0.71610.0435−0.01870.082*
C100.75491 (17)0.20137 (15)−0.04230 (17)0.0592 (4)
H10A0.79470.1839−0.09040.071*
C110.74309 (13)0.31434 (13)−0.01470 (14)0.0466 (4)
C120.78985 (14)0.40492 (14)−0.05799 (14)0.0490 (4)
C130.77181 (13)0.51312 (13)−0.03431 (14)0.0469 (4)
H13A0.80260.5710−0.06380.056*
C140.79036 (13)0.73268 (12)0.09176 (13)0.0433 (3)
C150.80585 (16)0.80610 (15)0.01145 (16)0.0573 (4)
H15A0.74870.8125−0.06640.069*
C160.90543 (18)0.87111 (17)0.04453 (19)0.0682 (5)
H16A0.91570.9203−0.01020.082*
C170.98691 (16)0.86051 (16)0.15903 (19)0.0629 (5)
C180.97531 (16)0.78960 (18)0.24158 (19)0.0675 (5)
H18A1.03270.78440.31940.081*
C190.87556 (15)0.72490 (15)0.20702 (16)0.0567 (4)
H19A0.86630.67580.26240.068*
C200.8921 (2)0.46109 (19)−0.1767 (2)0.0726 (6)
H20A0.92940.4291−0.22480.109*
H20B0.94630.5066−0.11390.109*
H20C0.82820.5064−0.22710.109*
C210.60126 (14)0.77220 (13)0.17819 (14)0.0479 (4)
H2N10.4932 (18)0.510 (2)0.2566 (19)0.065 (6)*
H1N10.4912 (19)0.642 (2)0.251 (2)0.073 (6)*
U11U22U33U12U13U23
F10.0660 (7)0.0911 (9)0.1290 (11)−0.0335 (7)0.0416 (7)−0.0317 (8)
O10.0622 (7)0.0378 (6)0.0650 (7)−0.0010 (5)0.0391 (5)−0.0020 (5)
O20.0845 (9)0.0567 (8)0.0838 (9)0.0070 (6)0.0566 (7)−0.0061 (6)
N10.0703 (9)0.0447 (8)0.0724 (9)−0.0022 (7)0.0461 (8)−0.0035 (7)
N20.0771 (10)0.0491 (9)0.0787 (10)0.0032 (7)0.0364 (8)−0.0149 (7)
C10.0464 (7)0.0404 (8)0.0472 (8)0.0021 (6)0.0202 (6)−0.0029 (6)
C20.0450 (7)0.0399 (8)0.0486 (8)0.0018 (6)0.0206 (6)−0.0025 (6)
C30.0441 (7)0.0378 (7)0.0420 (7)0.0014 (6)0.0162 (6)0.0007 (6)
C40.0429 (7)0.0383 (7)0.0411 (7)0.0010 (5)0.0155 (6)−0.0019 (6)
C50.0444 (7)0.0390 (7)0.0440 (7)0.0017 (6)0.0185 (6)−0.0025 (6)
C60.0433 (7)0.0392 (8)0.0443 (7)0.0030 (6)0.0131 (6)−0.0014 (6)
C70.0605 (9)0.0427 (8)0.0615 (9)0.0019 (7)0.0269 (8)0.0031 (7)
C80.0794 (12)0.0396 (9)0.0821 (12)0.0006 (8)0.0366 (10)0.0040 (8)
C90.0804 (13)0.0379 (9)0.0857 (13)0.0083 (8)0.0322 (10)−0.0052 (9)
C100.0653 (10)0.0477 (9)0.0664 (10)0.0085 (8)0.0283 (8)−0.0084 (8)
C110.0460 (8)0.0428 (8)0.0471 (8)0.0058 (6)0.0146 (6)−0.0042 (6)
C120.0494 (8)0.0503 (9)0.0499 (8)0.0046 (7)0.0227 (6)−0.0053 (7)
C130.0506 (8)0.0447 (8)0.0488 (8)−0.0014 (6)0.0234 (6)−0.0021 (6)
C140.0455 (7)0.0367 (7)0.0509 (8)0.0004 (6)0.0227 (6)−0.0051 (6)
C150.0639 (10)0.0539 (10)0.0538 (9)−0.0093 (8)0.0232 (8)0.0002 (7)
C160.0781 (13)0.0595 (11)0.0786 (12)−0.0178 (9)0.0434 (11)−0.0029 (9)
C170.0534 (9)0.0539 (10)0.0883 (13)−0.0127 (8)0.0357 (9)−0.0207 (9)
C180.0507 (10)0.0709 (12)0.0684 (11)−0.0004 (8)0.0107 (8)−0.0124 (9)
C190.0566 (9)0.0543 (10)0.0550 (9)−0.0006 (7)0.0180 (7)0.0028 (7)
C200.0858 (14)0.0711 (13)0.0848 (13)−0.0002 (10)0.0591 (12)−0.0052 (10)
C210.0510 (8)0.0442 (9)0.0516 (8)−0.0004 (6)0.0237 (7)−0.0039 (7)
F1—C171.364 (2)C8—C91.396 (3)
O1—C11.3440 (18)C8—H8A0.9300
O1—C51.3979 (18)C9—C101.364 (3)
O2—C121.3627 (19)C9—H9A0.9300
O2—C201.425 (2)C10—C111.411 (2)
N1—C11.349 (2)C10—H10A0.9300
N1—H2N10.89 (2)C11—C121.427 (2)
N1—H1N10.90 (2)C12—C131.361 (2)
N2—C211.147 (2)C13—H13A0.9300
C1—C21.356 (2)C14—C151.376 (2)
C2—C211.411 (2)C14—C191.378 (2)
C2—C31.517 (2)C15—C161.394 (3)
C3—C41.516 (2)C15—H15A0.9300
C3—C141.525 (2)C16—C171.357 (3)
C3—H3A0.9800C16—H16A0.9300
C4—C51.356 (2)C17—C181.358 (3)
C4—C131.419 (2)C18—C191.392 (3)
C5—C61.415 (2)C18—H18A0.9300
C6—C71.413 (2)C19—H19A0.9300
C6—C111.418 (2)C20—H20A0.9600
C7—C81.359 (3)C20—H20B0.9600
C7—H7A0.9300C20—H20C0.9600
C1—O1—C5118.35 (12)C9—C10—H10A119.7
C12—O2—C20116.83 (14)C11—C10—H10A119.7
C1—N1—H2N1115.9 (14)C10—C11—C6118.83 (15)
C1—N1—H1N1113.3 (15)C10—C11—C12122.65 (15)
H2N1—N1—H1N1124.2 (19)C6—C11—C12118.51 (14)
O1—C1—N1110.73 (14)C13—C12—O2124.33 (15)
O1—C1—C2123.18 (13)C13—C12—C11120.91 (14)
N1—C1—C2126.07 (15)O2—C12—C11114.76 (14)
C1—C2—C21117.63 (13)C12—C13—C4120.87 (15)
C1—C2—C3123.24 (13)C12—C13—H13A119.6
C21—C2—C3118.96 (13)C4—C13—H13A119.6
C4—C3—C2109.01 (12)C15—C14—C19118.55 (15)
C4—C3—C14112.07 (12)C15—C14—C3120.19 (14)
C2—C3—C14112.70 (12)C19—C14—C3121.25 (14)
C4—C3—H3A107.6C14—C15—C16121.29 (17)
C2—C3—H3A107.6C14—C15—H15A119.4
C14—C3—H3A107.6C16—C15—H15A119.4
C5—C4—C13118.64 (14)C17—C16—C15118.01 (18)
C5—C4—C3122.12 (13)C17—C16—H16A121.0
C13—C4—C3119.19 (13)C15—C16—H16A121.0
C4—C5—O1123.18 (13)C16—C17—C18122.84 (17)
C4—C5—C6122.86 (14)C16—C17—F1118.04 (19)
O1—C5—C6113.93 (13)C18—C17—F1119.11 (19)
C7—C6—C5123.01 (14)C17—C18—C19118.47 (17)
C7—C6—C11118.83 (14)C17—C18—H18A120.8
C5—C6—C11118.13 (14)C19—C18—H18A120.8
C8—C7—C6120.61 (17)C14—C19—C18120.84 (17)
C8—C7—H7A119.7C14—C19—H19A119.6
C6—C7—H7A119.7C18—C19—H19A119.6
C7—C8—C9120.59 (18)O2—C20—H20A109.5
C7—C8—H8A119.7O2—C20—H20B109.5
C9—C8—H8A119.7H20A—C20—H20B109.5
C10—C9—C8120.56 (16)O2—C20—H20C109.5
C10—C9—H9A119.7H20A—C20—H20C109.5
C8—C9—H9A119.7H20B—C20—H20C109.5
C9—C10—C11120.55 (17)N2—C21—C2179.06 (19)
C5—O1—C1—N1−176.40 (13)C9—C10—C11—C12−179.82 (17)
C5—O1—C1—C22.4 (2)C7—C6—C11—C101.6 (2)
O1—C1—C2—C21−178.96 (14)C5—C6—C11—C10−176.68 (14)
N1—C1—C2—C21−0.3 (2)C7—C6—C11—C12−179.03 (14)
O1—C1—C2—C35.8 (2)C5—C6—C11—C122.7 (2)
N1—C1—C2—C3−175.55 (15)C20—O2—C12—C13−4.3 (3)
C1—C2—C3—C4−10.64 (19)C20—O2—C12—C11175.28 (16)
C21—C2—C3—C4174.21 (13)C10—C11—C12—C13176.76 (16)
C1—C2—C3—C14−135.72 (15)C6—C11—C12—C13−2.6 (2)
C21—C2—C3—C1449.13 (18)C10—C11—C12—O2−2.8 (2)
C2—C3—C4—C58.57 (19)C6—C11—C12—O2177.82 (14)
C14—C3—C4—C5134.03 (14)O2—C12—C13—C4179.97 (14)
C2—C3—C4—C13−173.90 (12)C11—C12—C13—C40.4 (2)
C14—C3—C4—C13−48.44 (17)C5—C4—C13—C121.6 (2)
C13—C4—C5—O1−179.35 (13)C3—C4—C13—C12−176.02 (14)
C3—C4—C5—O1−1.8 (2)C4—C3—C14—C15106.56 (16)
C13—C4—C5—C6−1.4 (2)C2—C3—C14—C15−130.03 (15)
C3—C4—C5—C6176.10 (13)C4—C3—C14—C19−72.26 (18)
C1—O1—C5—C4−4.4 (2)C2—C3—C14—C1951.14 (19)
C1—O1—C5—C6177.49 (12)C19—C14—C15—C160.4 (3)
C4—C5—C6—C7−178.91 (15)C3—C14—C15—C16−178.43 (16)
O1—C5—C6—C7−0.8 (2)C14—C15—C16—C17−0.4 (3)
C4—C5—C6—C11−0.7 (2)C15—C16—C17—C180.1 (3)
O1—C5—C6—C11177.36 (12)C15—C16—C17—F1−178.75 (17)
C5—C6—C7—C8176.61 (16)C16—C17—C18—C190.1 (3)
C11—C6—C7—C8−1.6 (2)F1—C17—C18—C19178.99 (16)
C6—C7—C8—C90.4 (3)C15—C14—C19—C18−0.2 (3)
C7—C8—C9—C100.8 (3)C3—C14—C19—C18178.68 (15)
C8—C9—C10—C11−0.7 (3)C17—C18—C19—C14−0.1 (3)
C9—C10—C11—C6−0.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H2N1···N2i0.89 (2)2.17 (2)3.054 (2)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H2N1⋯N2i0.89 (2)2.17 (2)3.054 (2)175 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antimicrobial activities of novel naphtho[2,1-b]pyran, pyrano[2,3-d]pyrimidine and pyrano[3,2-e][1,2,4]triazolo[2,3-c]-pyrimidine derivatives.

Authors:  A H Bedair; H A Emam; N A El-Hady; K A Ahmed; A M El-Agrody
Journal:  Farmaco       Date:  2001-12

3.  Synthesis of 4H-chromene, coumarin, 12H-chromeno[2,3-d]pyrimidine derivatives and some of their antimicrobial and cytotoxicity activities.

Authors:  Nermien M Sabry; Hany M Mohamed; Essam Shawky A E H Khattab; Shymaa S Motlaq; Ahmed M El-Agrody
Journal:  Eur J Med Chem       Date:  2010-12-21       Impact factor: 6.514

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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