Literature DB >> 22719635

(3R,4S)-3,4,8-Trihy-droxy-1,2,3,4-tetra-hydro-naphthalen-1-one monohydrate from Embellisia eureka.

Tarik Ouchbani, Hafid Zouihri, El Mokhtar Essassi, Peter Proksch, Seik Weng Ng.   

Abstract

In the title hydrate, C(10)H(10)O(4)·H(2)O, the six-membered aliphatic ring that is fused to the benzene ring has a sofa shape, with the hy-droxy group in the 3-position (that represents the sofa back) of the aliphatic ring occupying a quasi-axial position. The hy-droxy group of the aromatic ring is hydrogen-bond donor to the carbonyl O atom; other O-H⋯O hydrogen bonds link the organic mol-ecules and the water mol-ecules into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719635      PMCID: PMC3379437          DOI: 10.1107/S1600536812022623

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of the title compound from other fungi, see: Borgschulte et al. (1991 ▶); Iwasaki et al. (1972 ▶); Trisuwan et al. (2008 ▶). The absolute configuration was assumed from published assignments, see: Trisuwan et al. (2008 ▶).

Experimental

Crystal data

C10H10O4·H2O M = 212.20 Orthorhombic, a = 4.6430 (4) Å b = 14.3904 (11) Å c = 14.4976 (10) Å V = 968.65 (13) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.31 × 0.28 × 0.24 mm

Data collection

Bruker APEX DUO diffractometer 6331 measured reflections 1320 independent reflections 916 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.096 S = 0.99 1320 reflections 156 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812022623/xu5544sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022623/xu5544Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022623/xu5544Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10O4·H2OF(000) = 448
Mr = 212.20Dx = 1.455 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1057 reflections
a = 4.6430 (4) Åθ = 2.8–21.8°
b = 14.3904 (11) ŵ = 0.12 mm1
c = 14.4976 (10) ÅT = 293 K
V = 968.65 (13) Å3Prism, brown
Z = 40.31 × 0.28 × 0.24 mm
Bruker APEX DUO diffractometer916 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.063
Graphite monochromatorθmax = 27.5°, θmin = 2.8°
ω scansh = −6→5
6331 measured reflectionsk = −18→17
1320 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0507P)2] where P = (Fo2 + 2Fc2)/3
1320 reflections(Δ/σ)max = 0.001
156 parametersΔρmax = 0.21 e Å3
5 restraintsΔρmin = −0.21 e Å3
xyzUiso*/Ueq
O10.5051 (5)0.75199 (14)0.74392 (14)0.0280 (6)
O20.1740 (5)0.83227 (14)0.62424 (12)0.0281 (5)
O30.1933 (5)1.08380 (14)0.69719 (15)0.0262 (5)
O4−0.0651 (5)1.10191 (16)0.87414 (16)0.0318 (5)
O1w0.0565 (5)0.82560 (15)0.43458 (14)0.0268 (5)
C10.1862 (7)0.8812 (2)0.77911 (18)0.0198 (6)
C20.3877 (7)0.81217 (18)0.80514 (18)0.0226 (7)
C30.4788 (7)0.8053 (2)0.89602 (18)0.0270 (7)
H3A0.60840.75920.91340.032*
C40.3753 (7)0.8673 (2)0.96024 (19)0.0278 (8)
H4A0.43510.86221.02130.033*
C50.1843 (7)0.9371 (2)0.9362 (2)0.0247 (7)
H5A0.12020.97870.98090.030*
C60.0881 (7)0.94556 (19)0.8461 (2)0.0211 (6)
C7−0.1173 (7)1.02214 (19)0.8181 (2)0.0244 (7)
H7−0.31471.00080.82930.029*
C8−0.0888 (7)1.0480 (2)0.7169 (2)0.0235 (7)
H8−0.23521.09420.70040.028*
C9−0.1250 (6)0.96220 (19)0.6583 (2)0.0236 (7)
H9A−0.31920.93850.66580.028*
H9B−0.09930.97860.59400.028*
C100.0858 (6)0.88749 (19)0.68341 (18)0.0193 (6)
H10.439 (8)0.761 (2)0.6908 (13)0.049 (12)*
H20.228 (12)1.1339 (18)0.725 (3)0.103 (19)*
H3−0.228 (4)1.118 (3)0.895 (2)0.061 (13)*
H40.071 (10)0.821 (2)0.4923 (8)0.060 (13)*
H50.212 (4)0.848 (2)0.414 (2)0.039 (11)*
U11U22U33U12U13U23
O10.0361 (14)0.0245 (12)0.0236 (11)0.0091 (10)−0.0056 (11)−0.0015 (10)
O20.0319 (12)0.0308 (11)0.0215 (10)0.0076 (11)−0.0046 (10)−0.0056 (9)
O30.0207 (11)0.0228 (12)0.0351 (12)−0.0052 (10)0.0051 (10)−0.0006 (10)
O40.0180 (11)0.0354 (13)0.0420 (13)0.0034 (11)0.0007 (11)−0.0182 (11)
O1w0.0195 (12)0.0378 (13)0.0231 (11)−0.0054 (11)−0.0032 (10)0.0044 (10)
C10.0176 (15)0.0199 (14)0.0220 (14)−0.0065 (12)0.0019 (12)0.0013 (12)
C20.0261 (17)0.0187 (15)0.0229 (14)−0.0045 (13)−0.0005 (13)−0.0019 (12)
C30.034 (2)0.0230 (16)0.0243 (15)−0.0021 (14)−0.0067 (14)0.0071 (14)
C40.034 (2)0.0321 (17)0.0175 (14)−0.0094 (15)−0.0003 (14)0.0024 (13)
C50.0224 (16)0.0282 (17)0.0235 (15)−0.0068 (14)0.0066 (14)−0.0030 (13)
C60.0153 (14)0.0246 (15)0.0234 (15)−0.0070 (13)0.0052 (13)−0.0015 (12)
C70.0173 (16)0.0263 (16)0.0298 (16)−0.0011 (13)0.0007 (14)−0.0069 (14)
C80.0157 (14)0.0209 (15)0.0340 (16)0.0029 (13)0.0003 (13)0.0015 (13)
C90.0158 (16)0.0299 (16)0.0252 (16)0.0005 (13)−0.0031 (13)−0.0006 (13)
C100.0155 (14)0.0215 (14)0.0211 (13)−0.0048 (13)−0.0004 (13)0.0016 (12)
O1—C21.355 (3)C3—H3A0.9300
O1—H10.840 (10)C4—C51.384 (4)
O2—C101.239 (3)C4—H4A0.9300
O3—C81.436 (4)C5—C61.386 (4)
O3—H20.841 (10)C5—H5A0.9300
O4—C71.427 (3)C6—C71.513 (4)
O4—H30.846 (10)C7—C81.520 (4)
O1w—H40.842 (10)C7—H70.9800
O1w—H50.846 (10)C8—C91.508 (4)
C1—C61.417 (4)C8—H80.9800
C1—C21.416 (4)C9—C101.498 (4)
C1—C101.466 (4)C9—H9A0.9700
C2—C31.387 (4)C9—H9B0.9700
C3—C41.377 (4)
C2—O1—H1111 (3)O4—C7—C6109.1 (2)
C8—O3—H2113 (4)O4—C7—C8109.7 (2)
C7—O4—H3106 (3)C6—C7—C8112.5 (3)
H4—O1w—H5109 (4)O4—C7—H7108.5
C6—C1—C2119.2 (2)C6—C7—H7108.5
C6—C1—C10120.4 (3)C8—C7—H7108.5
C2—C1—C10120.3 (2)O3—C8—C9106.4 (2)
O1—C2—C3117.0 (3)O3—C8—C7111.0 (2)
O1—C2—C1122.7 (2)C9—C8—C7109.5 (2)
C3—C2—C1120.3 (3)O3—C8—H8109.9
C4—C3—C2119.3 (3)C9—C8—H8109.9
C4—C3—H3A120.3C7—C8—H8109.9
C2—C3—H3A120.3C10—C9—C8112.2 (2)
C3—C4—C5121.6 (3)C10—C9—H9A109.2
C3—C4—H4A119.2C8—C9—H9A109.2
C5—C4—H4A119.2C10—C9—H9B109.2
C4—C5—C6120.5 (3)C8—C9—H9B109.2
C4—C5—H5A119.8H9A—C9—H9B107.9
C6—C5—H5A119.8O2—C10—C1120.7 (3)
C5—C6—C1119.0 (3)O2—C10—C9120.5 (2)
C5—C6—C7121.3 (3)C1—C10—C9118.8 (3)
C1—C6—C7119.6 (3)
C6—C1—C2—O1−175.8 (3)C1—C6—C7—O4−148.4 (3)
C10—C1—C2—O12.8 (4)C5—C6—C7—C8153.2 (3)
C6—C1—C2—C32.6 (4)C1—C6—C7—C8−26.4 (4)
C10—C1—C2—C3−178.9 (3)O4—C7—C8—O359.1 (3)
O1—C2—C3—C4177.3 (3)C6—C7—C8—O3−62.5 (3)
C1—C2—C3—C4−1.2 (4)O4—C7—C8—C9176.3 (2)
C2—C3—C4—C5−0.6 (5)C6—C7—C8—C954.7 (3)
C3—C4—C5—C61.0 (5)O3—C8—C9—C1063.4 (3)
C4—C5—C6—C10.5 (4)C7—C8—C9—C10−56.7 (3)
C4—C5—C6—C7−179.1 (3)C6—C1—C10—O2178.9 (3)
C2—C1—C6—C5−2.2 (4)C2—C1—C10—O20.4 (4)
C10—C1—C6—C5179.2 (3)C6—C1—C10—C9−0.8 (4)
C2—C1—C6—C7177.4 (3)C2—C1—C10—C9−179.3 (3)
C10—C1—C6—C7−1.1 (4)C8—C9—C10—O2−149.4 (3)
C5—C6—C7—O431.2 (4)C8—C9—C10—C130.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.84 (1)1.87 (3)2.590 (3)143 (3)
O1—H1···O1wi0.84 (1)2.27 (3)2.829 (3)124 (3)
O3—H2···O1ii0.84 (1)2.15 (3)2.924 (3)153 (5)
O4—H3···O1wiii0.85 (1)1.82 (1)2.657 (3)170 (4)
O1w—H4···O20.84 (1)1.98 (1)2.805 (3)167 (4)
O1w—H5···O4iv0.85 (1)1.88 (1)2.726 (3)177 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O20.84 (1)1.87 (3)2.590 (3)143 (3)
O1—H1⋯O1wi0.84 (1)2.27 (3)2.829 (3)124 (3)
O3—H2⋯O1ii0.84 (1)2.15 (3)2.924 (3)153 (5)
O4—H3⋯O1wiii0.85 (1)1.82 (1)2.657 (3)170 (4)
O1w—H4⋯O20.84 (1)1.98 (1)2.805 (3)167 (4)
O1w—H5⋯O4iv0.85 (1)1.88 (1)2.726 (3)177 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Epoxydons and a pyrone from the marine-derived fungus Nigrospora sp. PSU-F5.

Authors:  Kongkiat Trisuwan; Vatcharin Rukachaisirikul; Yaowapa Sukpondma; Sita Preedanon; Souwalak Phongpaichit; Nattawut Rungjindamai; Jariya Sakayaroj
Journal:  J Nat Prod       Date:  2008-07-23       Impact factor: 4.050

  2 in total
  1 in total

Review 1.  Fungal Naphthalenones; Promising Metabolites for Drug Discovery: Structures, Biosynthesis, Sources, and Pharmacological Potential.

Authors:  Sabrin R M Ibrahim; Sana A Fadil; Haifa A Fadil; Bayan A Eshmawi; Shaimaa G A Mohamed; Gamal A Mohamed
Journal:  Toxins (Basel)       Date:  2022-02-19       Impact factor: 4.546

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.