Literature DB >> 22719632

1,5-Bis(2-oxoindolin-3-yl-idene)thio-carbonohydrazide tetra-hydro-furan monosolvate.

Shaghayegh Pezeshkpour1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the thio-carbonohydrazide mol-ecule of the title compound, C(17)H(12)N(6)O(2)S·C(4)H(8)O, the terminal indolin-2-one ring systems make a dihedral angle of 20.13 (6)° with each other. Two intra-molecular N-H⋯O hydrogen bonds are present, each of which generates an S(6) ring. In the crystal, N-H⋯O hydrogen bonds lead to a mol-ecular chain running along the b axis. The tetra-hydro-furan solvent mol-ecule is disordered over two orientations in a 0.561 (11):0.439 (11) ratio.

Entities:  

Year:  2012        PMID: 22719632      PMCID: PMC3379434          DOI: 10.1107/S1600536812022714

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of the N-methyl­isatin analogue and its Sn(IV) complex and also the spectroscopic characterization of the title thio­carbonohydrazide, see: Bacchi et al. (2005 ▶).

Experimental

Crystal data

C17H12N6O2S·C4H8O M = 436.49 Triclinic, a = 8.4768 (1) Å b = 11.4765 (2) Å c = 11.9091 (2) Å α = 75.206 (1)° β = 72.553 (1)° γ = 69.416 (1)° V = 1020.02 (3) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.33 × 0.25 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.938, T max = 0.975 9421 measured reflections 4451 independent reflections 3628 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.121 S = 1.05 4451 reflections 338 parameters 30 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022714/is5142sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022714/is5142Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022714/is5142Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12N6O2S·C4H8OZ = 2
Mr = 436.49F(000) = 456
Triclinic, P1Dx = 1.421 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4768 (1) ÅCell parameters from 4598 reflections
b = 11.4765 (2) Åθ = 2.4–29.1°
c = 11.9091 (2) ŵ = 0.20 mm1
α = 75.206 (1)°T = 296 K
β = 72.553 (1)°Block, yellow
γ = 69.416 (1)°0.33 × 0.25 × 0.13 mm
V = 1020.02 (3) Å3
Bruker APEXII CCD diffractometer4451 independent reflections
Radiation source: fine-focus sealed tube3628 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
φ and ω scansθmax = 27.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.938, Tmax = 0.975k = −14→14
9421 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0692P)2 + 0.1602P] where P = (Fo2 + 2Fc2)/3
4451 reflections(Δ/σ)max = 0.001
338 parametersΔρmax = 0.20 e Å3
30 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.05012 (6)0.21013 (4)0.21038 (4)0.05637 (15)
O10.25587 (17)−0.15327 (11)0.48629 (10)0.0564 (3)
O20.20530 (16)0.44464 (11)0.49172 (9)0.0529 (3)
N10.38131 (19)−0.19240 (13)0.64563 (12)0.0498 (3)
H10.402 (2)−0.2746 (14)0.6651 (16)0.060*
N20.21787 (17)0.11827 (12)0.49897 (11)0.0435 (3)
N30.16236 (18)0.11149 (12)0.40644 (12)0.0455 (3)
H30.163 (2)0.0406 (14)0.3970 (16)0.055*
N40.13631 (18)0.32009 (11)0.34784 (11)0.0437 (3)
H40.167 (2)0.3167 (17)0.4115 (13)0.052*
N50.11499 (16)0.42919 (11)0.26740 (11)0.0411 (3)
N60.18651 (18)0.64925 (12)0.39333 (11)0.0470 (3)
H60.217 (2)0.6750 (18)0.4406 (15)0.056*
C10.3000 (2)−0.11911 (14)0.55902 (13)0.0448 (3)
C20.2764 (2)0.01502 (14)0.56776 (13)0.0417 (3)
C30.3419 (2)0.00786 (15)0.66947 (13)0.0442 (3)
C40.3523 (3)0.09899 (18)0.72112 (17)0.0617 (5)
H4A0.31140.18430.69090.074*
C50.4251 (3)0.0596 (2)0.81909 (18)0.0709 (5)
H50.43320.11930.85550.085*
C60.4860 (3)−0.0675 (2)0.86359 (16)0.0634 (5)
H6A0.5342−0.09160.92970.076*
C70.4769 (2)−0.15979 (17)0.81209 (14)0.0542 (4)
H70.5184−0.24510.84210.065*
C80.4042 (2)−0.11990 (15)0.71482 (13)0.0441 (3)
C90.1173 (2)0.21704 (14)0.32405 (13)0.0423 (3)
C100.1806 (2)0.52963 (14)0.40708 (13)0.0425 (3)
C110.13649 (18)0.52272 (13)0.29545 (12)0.0388 (3)
C120.12560 (19)0.64527 (13)0.21980 (13)0.0399 (3)
C130.0978 (2)0.69308 (15)0.10567 (13)0.0469 (4)
H130.07460.64480.06410.056*
C140.1054 (2)0.81390 (16)0.05535 (15)0.0558 (4)
H140.08810.8473−0.02130.067*
C150.1386 (3)0.88613 (16)0.11776 (17)0.0600 (5)
H150.14320.96740.08200.072*
C160.1649 (2)0.84010 (15)0.23188 (16)0.0544 (4)
H160.18600.88910.27370.065*
C170.1587 (2)0.71911 (14)0.28141 (13)0.0426 (3)
O30.446 (3)0.5472 (16)0.7408 (9)0.054 (3)0.561 (11)
C180.3597 (15)0.4754 (11)0.7110 (8)0.073 (3)0.561 (11)
H18C0.44320.40710.67100.087*0.561 (11)
H18D0.28330.52880.65920.087*0.561 (11)
C190.2583 (7)0.4248 (5)0.8281 (7)0.0748 (19)0.561 (11)
H19C0.24490.34510.82560.090*0.561 (11)
H19D0.14470.48430.85050.090*0.561 (11)
C200.3706 (7)0.4076 (5)0.9136 (5)0.0656 (13)0.561 (11)
H20C0.30650.40150.99630.079*0.561 (11)
H20D0.47310.33510.90420.079*0.561 (11)
C210.4135 (17)0.5314 (11)0.8674 (8)0.062 (2)0.561 (11)
H21C0.31720.60070.89760.075*0.561 (11)
H21D0.51510.52780.89140.075*0.561 (11)
O3'0.471 (3)0.545 (2)0.7353 (11)0.049 (2)0.439 (11)
C18'0.3702 (17)0.5049 (11)0.6829 (10)0.058 (2)0.439 (11)
H18A0.43410.48370.60470.070*0.439 (11)
H18B0.26230.57050.67540.070*0.439 (11)
C19'0.3368 (12)0.3903 (7)0.7693 (8)0.078 (2)0.439 (11)
H19A0.43850.31700.76180.094*0.439 (11)
H19B0.23980.37110.75910.094*0.439 (11)
C20'0.2948 (18)0.4357 (11)0.8886 (8)0.109 (4)0.439 (11)
H20A0.17630.48950.90790.131*0.439 (11)
H20B0.31400.36520.95350.131*0.439 (11)
C21'0.4234 (19)0.5088 (14)0.8621 (11)0.062 (3)0.439 (11)
H21A0.37140.58320.90000.074*0.439 (11)
H21B0.52490.45670.89220.074*0.439 (11)
U11U22U33U12U13U23
S10.0781 (3)0.0465 (2)0.0592 (3)−0.0176 (2)−0.0398 (2)−0.00685 (18)
O10.0811 (8)0.0489 (6)0.0550 (7)−0.0291 (6)−0.0329 (6)−0.0013 (5)
O20.0720 (8)0.0532 (6)0.0403 (6)−0.0235 (6)−0.0238 (5)0.0002 (5)
N10.0666 (9)0.0398 (7)0.0513 (8)−0.0214 (6)−0.0276 (7)0.0027 (6)
N20.0528 (7)0.0407 (6)0.0406 (6)−0.0147 (5)−0.0171 (5)−0.0045 (5)
N30.0621 (8)0.0359 (6)0.0462 (7)−0.0167 (6)−0.0251 (6)−0.0024 (5)
N40.0616 (8)0.0368 (6)0.0390 (6)−0.0157 (6)−0.0221 (6)−0.0031 (5)
N50.0518 (7)0.0361 (6)0.0380 (6)−0.0123 (5)−0.0171 (5)−0.0041 (5)
N60.0634 (8)0.0460 (7)0.0417 (7)−0.0197 (6)−0.0196 (6)−0.0108 (5)
C10.0539 (9)0.0416 (8)0.0438 (8)−0.0205 (7)−0.0171 (7)0.0002 (6)
C20.0484 (8)0.0412 (7)0.0386 (7)−0.0162 (6)−0.0132 (6)−0.0042 (6)
C30.0511 (8)0.0457 (8)0.0376 (7)−0.0151 (6)−0.0140 (6)−0.0046 (6)
C40.0863 (13)0.0511 (9)0.0559 (10)−0.0162 (9)−0.0307 (9)−0.0118 (8)
C50.1002 (16)0.0693 (12)0.0592 (11)−0.0239 (11)−0.0358 (11)−0.0190 (9)
C60.0763 (12)0.0757 (12)0.0461 (9)−0.0234 (10)−0.0281 (9)−0.0061 (8)
C70.0612 (10)0.0577 (10)0.0451 (8)−0.0196 (8)−0.0212 (7)0.0023 (7)
C80.0474 (8)0.0483 (8)0.0396 (7)−0.0197 (7)−0.0124 (6)−0.0017 (6)
C90.0478 (8)0.0392 (7)0.0431 (8)−0.0128 (6)−0.0159 (6)−0.0062 (6)
C100.0492 (8)0.0453 (8)0.0374 (7)−0.0155 (6)−0.0140 (6)−0.0080 (6)
C110.0450 (8)0.0382 (7)0.0350 (7)−0.0121 (6)−0.0124 (6)−0.0063 (5)
C120.0451 (8)0.0370 (7)0.0387 (7)−0.0116 (6)−0.0115 (6)−0.0069 (6)
C130.0564 (9)0.0452 (8)0.0407 (8)−0.0138 (7)−0.0158 (7)−0.0065 (6)
C140.0693 (11)0.0483 (9)0.0450 (8)−0.0145 (8)−0.0188 (8)0.0026 (7)
C150.0777 (12)0.0387 (8)0.0625 (10)−0.0189 (8)−0.0206 (9)0.0008 (7)
C160.0696 (11)0.0410 (8)0.0587 (10)−0.0185 (7)−0.0184 (8)−0.0118 (7)
C170.0483 (8)0.0388 (7)0.0423 (8)−0.0110 (6)−0.0130 (6)−0.0092 (6)
O30.066 (6)0.049 (3)0.053 (3)−0.023 (4)−0.019 (2)−0.003 (2)
C180.085 (4)0.078 (7)0.080 (4)−0.035 (4)−0.037 (3)−0.019 (4)
C190.059 (3)0.053 (2)0.115 (5)−0.020 (2)−0.028 (3)−0.005 (3)
C200.070 (3)0.053 (2)0.073 (3)−0.0203 (19)−0.032 (2)0.0115 (18)
C210.098 (6)0.048 (3)0.041 (3)−0.029 (4)−0.004 (3)−0.012 (2)
O3'0.055 (5)0.054 (4)0.047 (4)−0.015 (2)−0.021 (3)−0.014 (3)
C18'0.057 (4)0.047 (4)0.080 (5)−0.012 (3)−0.029 (4)−0.016 (4)
C19'0.072 (4)0.057 (3)0.112 (5)−0.028 (3)−0.014 (4)−0.022 (3)
C20'0.152 (11)0.123 (8)0.079 (5)−0.090 (8)−0.025 (6)0.009 (5)
C21'0.066 (5)0.059 (6)0.059 (5)−0.005 (3)−0.016 (3)−0.023 (3)
S1—C91.6467 (15)C13—H130.9300
O1—C11.2307 (18)C14—C151.387 (3)
O2—C101.2215 (18)C14—H140.9300
N1—C11.350 (2)C15—C161.381 (3)
N1—C81.403 (2)C15—H150.9300
N1—H10.877 (14)C16—C171.376 (2)
N2—C21.2868 (19)C16—H160.9300
N2—N31.3498 (17)O3—C211.424 (9)
N3—C91.3670 (19)O3—C181.438 (9)
N3—H30.847 (14)C18—C191.496 (9)
N4—C91.3557 (19)C18—H18C0.9700
N4—N51.3601 (17)C18—H18D0.9700
N4—H40.860 (14)C19—C201.527 (6)
N5—C111.2861 (18)C19—H19C0.9700
N6—C101.357 (2)C19—H19D0.9700
N6—C171.4088 (19)C20—C211.516 (9)
N6—H60.837 (14)C20—H20C0.9700
C1—C21.508 (2)C20—H20D0.9700
C2—C31.450 (2)C21—H21C0.9700
C3—C41.380 (2)C21—H21D0.9700
C3—C81.394 (2)O3'—C21'1.430 (11)
C4—C51.383 (3)O3'—C18'1.438 (11)
C4—H4A0.9300C18'—C19'1.504 (9)
C5—C61.384 (3)C18'—H18A0.9700
C5—H50.9300C18'—H18B0.9700
C6—C71.386 (3)C19'—C20'1.536 (10)
C6—H6A0.9300C19'—H19A0.9700
C7—C81.375 (2)C19'—H19B0.9700
C7—H70.9300C20'—C21'1.515 (11)
C10—C111.5123 (19)C20'—H20A0.9700
C11—C121.4525 (19)C20'—H20B0.9700
C12—C131.387 (2)C21'—H21A0.9700
C12—C171.394 (2)C21'—H21B0.9700
C13—C141.379 (2)
C1—N1—C8111.71 (13)C14—C15—H15119.3
C1—N1—H1124.8 (13)C17—C16—C15117.62 (15)
C8—N1—H1122.7 (13)C17—C16—H16121.2
C2—N2—N3118.31 (12)C15—C16—H16121.2
N2—N3—C9119.91 (12)C16—C17—C12121.62 (14)
N2—N3—H3119.6 (12)C16—C17—N6128.80 (14)
C9—N3—H3120.3 (12)C12—C17—N6109.57 (12)
C9—N4—N5119.78 (12)C21—O3—C18108.8 (8)
C9—N4—H4121.0 (12)O3—C18—C19104.9 (7)
N5—N4—H4119.1 (12)O3—C18—H18C110.8
C11—N5—N4116.37 (12)C19—C18—H18C110.8
C10—N6—C17111.43 (12)O3—C18—H18D110.8
C10—N6—H6124.2 (13)C19—C18—H18D110.8
C17—N6—H6123.8 (13)H18C—C18—H18D108.8
O1—C1—N1127.78 (14)C18—C19—C20102.6 (5)
O1—C1—C2126.52 (14)C18—C19—H19C111.3
N1—C1—C2105.69 (12)C20—C19—H19C111.3
N2—C2—C3124.33 (14)C18—C19—H19D111.3
N2—C2—C1129.33 (13)C20—C19—H19D111.3
C3—C2—C1106.29 (12)H19C—C19—H19D109.2
C4—C3—C8120.65 (15)C21—C20—C1997.6 (5)
C4—C3—C2132.58 (15)C21—C20—H20C112.2
C8—C3—C2106.77 (13)C19—C20—H20C112.2
C3—C4—C5118.04 (17)C21—C20—H20D112.2
C3—C4—H4A121.0C19—C20—H20D112.2
C5—C4—H4A121.0H20C—C20—H20D109.8
C4—C5—C6120.79 (18)O3—C21—C20105.2 (8)
C4—C5—H5119.6O3—C21—H21C110.7
C6—C5—H5119.6C20—C21—H21C110.7
C5—C6—C7121.64 (16)O3—C21—H21D110.7
C5—C6—H6A119.2C20—C21—H21D110.7
C7—C6—H6A119.2H21C—C21—H21D108.8
C8—C7—C6117.22 (16)C21'—O3'—C18'108.2 (10)
C8—C7—H7121.4O3'—C18'—C19'103.9 (9)
C6—C7—H7121.4O3'—C18'—H18A111.0
C7—C8—C3121.65 (15)C19'—C18'—H18A111.0
C7—C8—N1128.92 (15)O3'—C18'—H18B111.0
C3—C8—N1109.42 (13)C19'—C18'—H18B111.0
N4—C9—N3112.67 (13)H18A—C18'—H18B109.0
N4—C9—S1126.85 (11)C18'—C19'—C20'100.5 (7)
N3—C9—S1120.48 (11)C18'—C19'—H19A111.7
O2—C10—N6127.57 (14)C20'—C19'—H19A111.7
O2—C10—C11126.71 (13)C18'—C19'—H19B111.7
N6—C10—C11105.72 (12)C20'—C19'—H19B111.7
N5—C11—C12124.64 (13)H19A—C19'—H19B109.4
N5—C11—C10129.04 (13)C21'—C20'—C19'101.2 (8)
C12—C11—C10106.31 (12)C21'—C20'—H20A111.5
C13—C12—C17120.17 (13)C19'—C20'—H20A111.5
C13—C12—C11132.86 (13)C21'—C20'—H20B111.5
C17—C12—C11106.91 (12)C19'—C20'—H20B111.5
C14—C13—C12118.37 (15)H20A—C20'—H20B109.3
C14—C13—H13120.8O3'—C21'—C20'107.5 (9)
C12—C13—H13120.8O3'—C21'—H21A110.2
C13—C14—C15120.77 (15)C20'—C21'—H21A110.2
C13—C14—H14119.6O3'—C21'—H21B110.2
C15—C14—H14119.6C20'—C21'—H21B110.2
C16—C15—C14121.45 (15)H21A—C21'—H21B108.5
C16—C15—H15119.3
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.88 (1)1.96 (2)2.829 (15)168 (2)
N1—H1···O3′i0.88 (1)1.98 (3)2.84 (2)167 (2)
N3—H3···O10.85 (1)2.18 (2)2.8369 (16)134 (2)
N4—H4···O20.86 (1)2.10 (2)2.7857 (16)136 (2)
N6—H6···O1ii0.84 (1)2.32 (2)3.0522 (16)146 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.88 (1)1.96 (2)2.829 (15)168 (2)
N1—H1⋯O3′i0.88 (1)1.98 (3)2.84 (2)167 (2)
N3—H3⋯O10.85 (1)2.18 (2)2.8369 (16)134 (2)
N4—H4⋯O20.86 (1)2.10 (2)2.7857 (16)136 (2)
N6—H6⋯O1ii0.84 (1)2.32 (2)3.0522 (16)146 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antimicrobial and mutagenic properties of organotin(IV) complexes with isatin and N-alkylisatin bisthiocarbonohydrazones.

Authors:  A Bacchi; M Carcelli; P Pelagatti; G Pelizzi; M C Rodriguez-Arguelles; D Rogolino; C Solinas; F Zani
Journal:  J Inorg Biochem       Date:  2005-02       Impact factor: 4.155

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.