Literature DB >> 22719622

N-(5-Chloro-1,3-thia-zol-2-yl)-2,4-difluoro-benzamide.

Xi-Wang Liu1, Jian-Yong Li, Han Zhang, Ya-Jun Yang, Ji-Yu Zhang.   

Abstract

The title compound, C(10)H(5)ClF(2)N(2)OS, was obtained by linking an amino heterocycle and a substituted benzoyl chloride. The dihedral angle between the two rings is 41.2 (2)° and the equalization of the amide C-N bond lengths reveals the existence of conjugation between the benzene ring and the thia-zole unit. In the crystal, pairs of N-H⋯N hydrogen bonds link mol-ecules into inversion dimers. Non-classical C-H⋯F and C-H⋯O hydrogen bonds stabilize the crystal structure.

Entities:  

Year:  2012        PMID: 22719622      PMCID: PMC3379424          DOI: 10.1107/S1600536812022477

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis and the biological activity of thia­zolides, see: Ballard et al. (2011 ▶).

Experimental

Crystal data

C10H5ClF2N2OS M = 274.68 Triclinic, a = 6.929 (2) Å b = 7.330 (2) Å c = 12.179 (4) Å α = 101.669 (3)° β = 98.277 (3)° γ = 111.796 (3)° V = 545.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.55 mm−1 T = 296 K 0.35 × 0.33 × 0.27 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.831, T max = 0.866 3930 measured reflections 1998 independent reflections 1693 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.136 S = 1.06 1998 reflections 155 parameters H-atom parameters constrained Δρmax = 1.25 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022477/rk2350sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022477/rk2350Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812022477/rk2350Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H5ClF2N2OSZ = 2
Mr = 274.68F(000) = 276
Triclinic, P1Dx = 1.671 Mg m3
Hall symbol: -P 1Melting point = 428–429 K
a = 6.929 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.330 (2) ÅCell parameters from 2870 reflections
c = 12.179 (4) Åθ = 3.1–28.2°
α = 101.669 (3)°µ = 0.55 mm1
β = 98.277 (3)°T = 296 K
γ = 111.796 (3)°Block, colourless
V = 545.9 (3) Å30.35 × 0.33 × 0.27 mm
Bruker APEXII CCD diffractometer1998 independent reflections
Radiation source: fine-focus sealed tube1693 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ– and ω–scansθmax = 25.5°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.831, Tmax = 0.866k = −8→8
3930 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.136w = 1/[σ2(Fo2) + (0.0689P)2 + 0.4949P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1998 reflectionsΔρmax = 1.25 e Å3
155 parametersΔρmin = −0.33 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.53 (3)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0517 (5)0.7233 (5)0.9365 (3)0.0438 (7)
C21.2260 (5)0.8083 (5)1.0282 (3)0.0494 (8)
H21.22960.89681.09580.059*
C31.3958 (5)0.7579 (5)1.0168 (3)0.0467 (8)
C41.3945 (5)0.6268 (5)0.9182 (3)0.0464 (7)
H41.51160.59540.91260.056*
C51.2153 (5)0.5432 (5)0.8280 (3)0.0413 (7)
H51.21200.45300.76120.050*
C61.0387 (4)0.5896 (4)0.8336 (2)0.0358 (6)
C70.8392 (5)0.4900 (4)0.7407 (2)0.0390 (7)
C80.6940 (4)0.3522 (4)0.5350 (2)0.0365 (6)
C90.5284 (5)0.2099 (5)0.3514 (3)0.0505 (8)
H90.51660.17330.27220.061*
C100.3587 (5)0.1551 (4)0.3969 (3)0.0447 (7)
Cl10.09389 (14)0.01753 (14)0.32522 (8)0.0662 (4)
F11.5714 (3)0.8434 (3)1.10528 (18)0.0673 (6)
F20.8890 (3)0.7783 (4)0.9458 (2)0.0796 (8)
N10.8646 (4)0.4602 (4)0.62983 (19)0.0376 (6)
H10.99160.51060.61910.045*
N20.7224 (4)0.3246 (4)0.4302 (2)0.0449 (6)
O30.6609 (3)0.4314 (4)0.75914 (18)0.0553 (6)
S10.43196 (11)0.24360 (11)0.54607 (6)0.0421 (3)
U11U22U33U12U13U23
C10.0358 (15)0.0438 (16)0.0480 (17)0.0122 (13)0.0149 (13)0.0095 (13)
C20.0483 (18)0.0462 (17)0.0386 (16)0.0079 (14)0.0089 (14)0.0038 (13)
C30.0365 (15)0.0494 (18)0.0420 (16)0.0035 (13)0.0018 (12)0.0198 (14)
C40.0377 (15)0.0559 (19)0.0504 (18)0.0196 (14)0.0119 (14)0.0236 (15)
C50.0396 (15)0.0447 (16)0.0393 (15)0.0156 (13)0.0128 (12)0.0123 (13)
C60.0329 (13)0.0370 (14)0.0339 (14)0.0084 (11)0.0107 (11)0.0119 (11)
C70.0377 (15)0.0413 (15)0.0368 (15)0.0135 (12)0.0117 (12)0.0121 (12)
C80.0339 (13)0.0349 (14)0.0372 (14)0.0094 (11)0.0101 (11)0.0110 (11)
C90.0490 (18)0.0455 (17)0.0361 (16)0.0020 (14)0.0049 (13)0.0052 (13)
C100.0414 (16)0.0335 (15)0.0440 (16)0.0049 (12)0.0006 (13)0.0066 (12)
Cl10.0435 (5)0.0572 (6)0.0666 (6)−0.0003 (4)−0.0052 (4)0.0058 (4)
F10.0444 (11)0.0784 (14)0.0528 (12)0.0031 (10)−0.0082 (9)0.0204 (10)
F20.0495 (12)0.0830 (16)0.0895 (17)0.0280 (11)0.0141 (11)−0.0104 (13)
N10.0304 (11)0.0443 (13)0.0336 (12)0.0099 (10)0.0091 (10)0.0111 (10)
N20.0423 (13)0.0449 (14)0.0341 (13)0.0058 (11)0.0096 (11)0.0062 (11)
O30.0349 (11)0.0801 (17)0.0385 (12)0.0114 (11)0.0119 (9)0.0125 (11)
S10.0327 (4)0.0449 (5)0.0426 (5)0.0098 (3)0.0088 (3)0.0114 (3)
C1—F21.343 (4)C7—O31.220 (3)
C1—C21.366 (4)C7—N11.371 (4)
C1—C61.393 (4)C8—N21.306 (4)
C2—C31.374 (5)C8—N11.379 (4)
C2—H20.9300C8—S11.729 (3)
C3—F11.348 (3)C9—C101.334 (5)
C3—C41.374 (5)C9—N21.378 (4)
C4—C51.376 (4)C9—H90.9300
C4—H40.9300C10—Cl11.719 (3)
C5—C61.394 (4)C10—S11.730 (3)
C5—H50.9300N1—H10.8600
C6—C71.480 (4)
F2—C1—C2117.5 (3)O3—C7—N1120.7 (3)
F2—C1—C6119.1 (3)O3—C7—C6123.3 (3)
C2—C1—C6123.4 (3)N1—C7—C6116.0 (2)
C1—C2—C3117.4 (3)N2—C8—N1121.3 (2)
C1—C2—H2121.3N2—C8—S1115.8 (2)
C3—C2—H2121.3N1—C8—S1122.9 (2)
F1—C3—C4119.0 (3)C10—C9—N2115.1 (3)
F1—C3—C2118.5 (3)C10—C9—H9122.5
C4—C3—C2122.5 (3)N2—C9—H9122.5
C3—C4—C5118.3 (3)C9—C10—Cl1127.8 (3)
C3—C4—H4120.9C9—C10—S1111.6 (2)
C5—C4—H4120.9Cl1—C10—S1120.56 (19)
C4—C5—C6122.0 (3)C7—N1—C8122.4 (2)
C4—C5—H5119.0C7—N1—H1118.8
C6—C5—H5119.0C8—N1—H1118.8
C1—C6—C5116.4 (3)C8—N2—C9110.0 (3)
C1—C6—C7120.8 (3)C8—S1—C1087.44 (14)
C5—C6—C7122.6 (3)
F2—C1—C2—C3−177.5 (3)C1—C6—C7—N1145.0 (3)
C6—C1—C2—C30.2 (5)C5—C6—C7—N1−40.5 (4)
C1—C2—C3—F1178.6 (3)N2—C9—C10—Cl1178.5 (2)
C1—C2—C3—C4−0.3 (5)N2—C9—C10—S1−0.6 (4)
F1—C3—C4—C5−179.1 (3)O3—C7—N1—C8−4.4 (4)
C2—C3—C4—C5−0.1 (5)C6—C7—N1—C8173.7 (2)
C3—C4—C5—C60.8 (4)N2—C8—N1—C7−179.6 (3)
F2—C1—C6—C5178.1 (3)S1—C8—N1—C7−0.1 (4)
C2—C1—C6—C50.4 (4)N1—C8—N2—C9179.1 (3)
F2—C1—C6—C7−7.1 (4)S1—C8—N2—C9−0.4 (3)
C2—C1—C6—C7175.2 (3)C10—C9—N2—C80.7 (4)
C4—C5—C6—C1−0.9 (4)N2—C8—S1—C100.1 (2)
C4—C5—C6—C7−175.6 (3)N1—C8—S1—C10−179.4 (3)
C1—C6—C7—O3−37.0 (4)C9—C10—S1—C80.3 (3)
C5—C6—C7—O3137.5 (3)Cl1—C10—S1—C8−178.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.862.152.988 (3)166
C4—H4···F2ii0.932.383.127 (4)137
C4—H4···O3ii0.932.563.329 (4)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.862.152.988 (3)166
C4—H4⋯F2ii0.932.383.127 (4)137
C4—H4⋯O3ii0.932.563.329 (4)140

Symmetry codes: (i) ; (ii) .

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