Literature DB >> 22719609

N(1),N(4),3,6-Tetra-methyl-1,2,4,5-tetra-zine-1,4-dicarboxamide.

Na-Bo Sun, Guo-Wu Rao, Qun Shen.   

Abstract

The asymmetric unit of the title compound, C(8)H(14)N(6)O(2), contains two independent mol-ecules. In one mol-ecule, the amide-substituted N atoms of the tetra-zine ring deviate from the plane [maximum deviation = 0.028 (1) Å] through the four other atoms in the ring by 0.350 (2) and 0.344 (2) Å, forming a boat conformation, and the mean planes of the two carboxamide groups form dihedral angles of 10.46 (13) and 20.41 (12)° with the four approximtely planar atoms in the tetra-zine ring. In the other mol-ecule, the amide-substituted N atoms of the tetra-zine ring deviate from the plane [maximum deviation = 0.033 (1) Å] through the four other atoms in the ring by 0.324 (2) and 0.307 (2) Å, forming a boat conformation, and the mean planes of the two carboxamide groups form dihedral angles of 14.66 (11) and 17.08 (10)° with the four approximately planar atoms of the tetra-zine ring. In the crystal, N-H⋯O hydrogen bonds connect mol-ecules to form a two-dimensional network parallel to (1-1-1). Intra-molecular N-H⋯N hydrogen bonds are observed.

Entities:  

Year:  2012        PMID: 22719609      PMCID: PMC3379411          DOI: 10.1107/S1600536812022519

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical reactions of 1,2,4,5-tetra­zine derivatives, see: Domingo et al. (2009 ▶); Lorincz et al. (2010 ▶) and for their biological activity, see: Devaraj et al. (2009 ▶); Eremeev et al. (1978 ▶, 1980 ▶); Han et al. (2010 ▶); Neunhoeffer (1984 ▶); Sauer (1996 ▶). For the anti­tumor activity of 1,2,4,5-tetra­zine derivatives, see: Hu et al. (2002 ▶, 2004 ▶); Rao & Hu (2005 ▶, 2006 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For the synthesis of the title compound, see: Hu et al. (2004 ▶); Rao et al. (2012 ▶); Sun et al. (2003 ▶).

Experimental

Crystal data

C8H14N6O2 M = 226.25 Triclinic, a = 9.0002 (17) Å b = 12.045 (2) Å c = 12.357 (2) Å α = 118.386 (2)° β = 101.701 (3)° γ = 99.494 (3)° V = 1099.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.34 × 0.30 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.966, T max = 0.985 5571 measured reflections 3809 independent reflections 3178 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.115 S = 1.06 3809 reflections 298 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022519/lh5475sup1.cif Supplementary material file. DOI: 10.1107/S1600536812022519/lh5475Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022519/lh5475Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812022519/lh5475Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H14N6O2Z = 4
Mr = 226.25F(000) = 480
Triclinic, P1Dx = 1.367 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0002 (17) ÅCell parameters from 2161 reflections
b = 12.045 (2) Åθ = 2.4–26.0°
c = 12.357 (2) ŵ = 0.10 mm1
α = 118.386 (2)°T = 298 K
β = 101.701 (3)°Block, colourless
γ = 99.494 (3)°0.34 × 0.30 × 0.15 mm
V = 1099.6 (4) Å3
Bruker SMART CCD diffractometer3809 independent reflections
Radiation source: fine-focus sealed tube3178 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −10→10
Tmin = 0.966, Tmax = 0.985k = −14→11
5571 measured reflectionsl = −11→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.115w = 1/[σ2(Fo2) + (0.0511P)2 + 0.2386P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3809 reflectionsΔρmax = 0.17 e Å3
298 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.028 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.65578 (15)1.05745 (12)0.47718 (12)0.0481 (3)
O40.89425 (15)0.52517 (12)0.38657 (12)0.0485 (3)
O31.24324 (16)0.92428 (15)1.04950 (13)0.0591 (4)
O10.31715 (16)0.38004 (14)0.09001 (15)0.0624 (4)
N111.11229 (17)0.83375 (14)0.67258 (14)0.0413 (4)
N50.42071 (17)0.76464 (15)0.18158 (14)0.0428 (4)
N80.90988 (17)0.73177 (15)0.76534 (14)0.0441 (4)
N10.48121 (17)0.59229 (14)0.19776 (14)0.0427 (4)
N40.54445 (17)0.84531 (14)0.30278 (14)0.0408 (4)
N20.64314 (17)0.67031 (15)0.26959 (15)0.0456 (4)
N100.99591 (17)0.70658 (13)0.59312 (13)0.0401 (4)
N71.06880 (17)0.81490 (15)0.84255 (14)0.0424 (4)
C50.5569 (2)0.98150 (17)0.36969 (17)0.0389 (4)
C90.8816 (2)0.67574 (17)0.64282 (17)0.0389 (4)
N121.10612 (19)0.69002 (15)0.43553 (14)0.0459 (4)
H121.17310.76600.49500.055*
C121.1485 (2)0.88147 (16)0.79504 (16)0.0378 (4)
N30.57057 (19)0.42708 (15)0.20694 (15)0.0479 (4)
H30.65880.48860.25910.058*
C40.4495 (2)0.45756 (18)0.15889 (17)0.0432 (4)
N60.45245 (19)1.01525 (15)0.30820 (15)0.0470 (4)
H60.39190.95770.22970.056*
N90.99787 (19)0.79818 (17)1.00444 (15)0.0511 (4)
H90.90730.74700.94580.061*
C140.9928 (2)0.63353 (17)0.46360 (16)0.0379 (4)
C30.6682 (2)0.79506 (18)0.32349 (17)0.0408 (4)
C131.1104 (2)0.85187 (18)0.97372 (17)0.0425 (4)
C60.3891 (2)0.64048 (18)0.13459 (17)0.0394 (4)
C100.7187 (2)0.5826 (2)0.55809 (19)0.0531 (5)
H10A0.67370.60750.49870.080*
H10B0.65270.58610.61100.080*
H10C0.72490.49410.51000.080*
C111.2743 (2)1.01175 (18)0.88275 (18)0.0505 (5)
H11A1.23691.06990.94930.076*
H11B1.29851.05010.83340.076*
H11C1.36850.99930.92210.076*
C10.8344 (2)0.88257 (19)0.4028 (2)0.0555 (5)
H1A0.86270.94320.37530.083*
H1B0.90550.82960.39140.083*
H1C0.84220.93140.49290.083*
C20.2535 (2)0.5519 (2)0.01109 (18)0.0531 (5)
H2A0.28760.4846−0.05070.080*
H2B0.21820.6029−0.02350.080*
H2C0.16760.51100.02790.080*
C151.0255 (3)0.8246 (2)1.13515 (19)0.0585 (6)
H15A0.93170.77781.13950.088*
H15B1.04960.91791.19490.088*
H15C1.11330.79551.15780.088*
C70.5575 (3)0.29262 (19)0.1735 (2)0.0622 (6)
H7A0.64100.29310.23610.093*
H7B0.56690.24280.08860.093*
H7C0.45610.25270.17360.093*
C80.4394 (3)1.1471 (2)0.3715 (2)0.0615 (6)
H8A0.35071.15150.31720.092*
H8B0.53541.20860.38670.092*
H8C0.42351.16940.45300.092*
C161.1183 (3)0.6249 (2)0.30563 (19)0.0606 (6)
H16A1.20610.67970.30280.091*
H16B1.02150.61080.24440.091*
H16C1.13540.54130.28380.091*
U11U22U33U12U13U23
O20.0450 (7)0.0421 (7)0.0381 (7)0.0013 (6)0.0023 (6)0.0150 (6)
O40.0481 (8)0.0373 (7)0.0384 (7)0.0026 (6)0.0046 (6)0.0109 (6)
O30.0435 (8)0.0760 (10)0.0429 (8)−0.0041 (7)−0.0020 (6)0.0335 (8)
O10.0390 (8)0.0510 (8)0.0730 (10)−0.0083 (7)−0.0028 (7)0.0297 (8)
N110.0412 (9)0.0335 (8)0.0358 (8)0.0004 (6)0.0062 (7)0.0142 (7)
N50.0354 (8)0.0437 (9)0.0340 (8)0.0057 (7)0.0019 (7)0.0148 (7)
N80.0333 (8)0.0458 (9)0.0382 (9)0.0007 (7)0.0040 (7)0.0176 (7)
N10.0308 (8)0.0387 (8)0.0433 (9)0.0011 (6)0.0026 (7)0.0170 (7)
N40.0337 (8)0.0375 (8)0.0354 (8)0.0039 (6)0.0007 (6)0.0139 (7)
N20.0311 (8)0.0403 (9)0.0478 (9)0.0012 (7)−0.0003 (7)0.0183 (7)
N100.0405 (8)0.0330 (8)0.0312 (8)−0.0004 (6)0.0054 (6)0.0114 (6)
N70.0351 (8)0.0463 (9)0.0337 (8)0.0013 (7)0.0041 (6)0.0184 (7)
C50.0347 (9)0.0410 (10)0.0344 (10)0.0026 (8)0.0086 (8)0.0189 (8)
C90.0371 (10)0.0357 (9)0.0355 (10)0.0080 (8)0.0059 (8)0.0157 (8)
N120.0478 (9)0.0414 (8)0.0337 (8)0.0040 (7)0.0104 (7)0.0130 (7)
C120.0356 (9)0.0359 (9)0.0345 (10)0.0071 (7)0.0074 (8)0.0157 (8)
N30.0419 (9)0.0375 (8)0.0465 (9)0.0002 (7)−0.0005 (7)0.0184 (7)
C40.0376 (10)0.0399 (10)0.0386 (10)−0.0003 (8)0.0084 (8)0.0162 (8)
N60.0510 (10)0.0433 (9)0.0371 (8)0.0113 (7)0.0055 (7)0.0184 (7)
N90.0410 (9)0.0636 (11)0.0379 (9)0.0014 (8)0.0068 (7)0.0257 (8)
C140.0378 (10)0.0345 (9)0.0340 (9)0.0101 (8)0.0042 (8)0.0158 (8)
C30.0355 (10)0.0417 (10)0.0388 (10)0.0050 (8)0.0065 (8)0.0206 (8)
C130.0381 (10)0.0469 (11)0.0361 (10)0.0085 (8)0.0051 (8)0.0211 (9)
C60.0315 (9)0.0438 (10)0.0340 (9)0.0060 (8)0.0092 (7)0.0162 (8)
C100.0392 (11)0.0532 (12)0.0458 (11)0.0014 (9)0.0072 (9)0.0170 (10)
C110.0526 (12)0.0416 (10)0.0386 (10)−0.0013 (9)0.0072 (9)0.0152 (9)
C10.0326 (10)0.0471 (11)0.0675 (14)0.0022 (9)−0.0023 (9)0.0262 (10)
C20.0467 (12)0.0517 (12)0.0385 (11)0.0049 (9)0.0006 (9)0.0155 (9)
C150.0535 (13)0.0769 (15)0.0432 (11)0.0097 (11)0.0124 (10)0.0345 (11)
C70.0627 (14)0.0434 (11)0.0638 (14)0.0043 (10)0.0048 (11)0.0257 (11)
C80.0726 (15)0.0491 (12)0.0582 (13)0.0209 (11)0.0138 (12)0.0271 (11)
C160.0711 (15)0.0603 (13)0.0410 (11)0.0120 (11)0.0205 (11)0.0215 (10)
O2—C51.221 (2)N6—H60.8600
O4—C141.221 (2)N9—C131.327 (2)
O3—C131.221 (2)N9—C151.447 (2)
O1—C41.217 (2)N9—H90.8600
N11—C121.280 (2)C3—C11.487 (2)
N11—N101.4251 (19)C6—C21.491 (2)
N5—C61.274 (2)C10—H10A0.9600
N5—N41.418 (2)C10—H10B0.9600
N8—C91.276 (2)C10—H10C0.9600
N8—N71.423 (2)C11—H11A0.9600
N1—C61.400 (2)C11—H11B0.9600
N1—C41.413 (2)C11—H11C0.9600
N1—N21.423 (2)C1—H1A0.9600
N4—C31.388 (2)C1—H1B0.9600
N4—C51.414 (2)C1—H1C0.9600
N2—C31.276 (2)C2—H2A0.9600
N10—C91.386 (2)C2—H2B0.9600
N10—C141.404 (2)C2—H2C0.9600
N7—C121.390 (2)C15—H15A0.9600
N7—C131.406 (2)C15—H15B0.9600
C5—N61.325 (2)C15—H15C0.9600
C9—C101.491 (2)C7—H7A0.9600
N12—C141.328 (2)C7—H7B0.9600
N12—C161.451 (2)C7—H7C0.9600
N12—H120.8600C8—H8A0.9600
C12—C111.489 (2)C8—H8B0.9600
N3—C41.323 (2)C8—H8C0.9600
N3—C71.445 (2)C16—H16A0.9600
N3—H30.8600C16—H16B0.9600
N6—C81.437 (3)C16—H16C0.9600
C12—N11—N10114.96 (14)N5—C6—C2117.15 (17)
C6—N5—N4115.19 (15)N1—C6—C2122.75 (16)
C9—N8—N7115.02 (15)C9—C10—H10A109.5
C6—N1—C4124.52 (15)C9—C10—H10B109.5
C6—N1—N2116.29 (14)H10A—C10—H10B109.5
C4—N1—N2114.69 (14)C9—C10—H10C109.5
C3—N4—C5124.12 (14)H10A—C10—H10C109.5
C3—N4—N5116.73 (14)H10B—C10—H10C109.5
C5—N4—N5115.63 (14)C12—C11—H11A109.5
C3—N2—N1114.98 (15)C12—C11—H11B109.5
C9—N10—C14125.66 (14)H11A—C11—H11B109.5
C9—N10—N11117.72 (13)C12—C11—H11C109.5
C14—N10—N11115.71 (14)H11A—C11—H11C109.5
C12—N7—C13124.70 (15)H11B—C11—H11C109.5
C12—N7—N8117.36 (14)C3—C1—H1A109.5
C13—N7—N8114.98 (14)C3—C1—H1B109.5
O2—C5—N6124.99 (17)H1A—C1—H1B109.5
O2—C5—N4120.13 (16)C3—C1—H1C109.5
N6—C5—N4114.86 (15)H1A—C1—H1C109.5
N8—C9—N10120.67 (16)H1B—C1—H1C109.5
N8—C9—C10116.79 (17)C6—C2—H2A109.5
N10—C9—C10122.46 (16)C6—C2—H2B109.5
C14—N12—C16120.73 (16)H2A—C2—H2B109.5
C14—N12—H12119.6C6—C2—H2C109.5
C16—N12—H12119.6H2A—C2—H2C109.5
N11—C12—N7120.50 (15)H2B—C2—H2C109.5
N11—C12—C11117.34 (16)N9—C15—H15A109.5
N7—C12—C11122.13 (15)N9—C15—H15B109.5
C4—N3—C7121.39 (16)H15A—C15—H15B109.5
C4—N3—H3119.3N9—C15—H15C109.5
C7—N3—H3119.3H15A—C15—H15C109.5
O1—C4—N3124.76 (18)H15B—C15—H15C109.5
O1—C4—N1120.22 (17)N3—C7—H7A109.5
N3—C4—N1114.97 (15)N3—C7—H7B109.5
C5—N6—C8120.58 (16)H7A—C7—H7B109.5
C5—N6—H6119.7N3—C7—H7C109.5
C8—N6—H6119.7H7A—C7—H7C109.5
C13—N9—C15120.93 (16)H7B—C7—H7C109.5
C13—N9—H9119.5N6—C8—H8A109.5
C15—N9—H9119.5N6—C8—H8B109.5
O4—C14—N12124.41 (16)H8A—C8—H8B109.5
O4—C14—N10120.80 (16)N6—C8—H8C109.5
N12—C14—N10114.76 (15)H8A—C8—H8C109.5
N2—C3—N4120.34 (16)H8B—C8—H8C109.5
N2—C3—C1117.75 (17)N12—C16—H16A109.5
N4—C3—C1121.85 (16)N12—C16—H16B109.5
O3—C13—N9124.37 (17)H16A—C16—H16B109.5
O3—C13—N7120.74 (17)N12—C16—H16C109.5
N9—C13—N7114.83 (16)H16A—C16—H16C109.5
N5—C6—N1120.09 (15)H16B—C16—H16C109.5
C6—N5—N4—C333.9 (2)C6—N1—C4—N3162.35 (16)
C6—N5—N4—C5−166.36 (15)N2—N1—C4—N37.1 (2)
C6—N1—N2—C333.9 (2)O2—C5—N6—C8−5.5 (3)
C4—N1—N2—C3−168.75 (16)N4—C5—N6—C8172.64 (16)
C12—N11—N10—C931.0 (2)C16—N12—C14—O41.3 (3)
C12—N11—N10—C14−159.33 (16)C16—N12—C14—N10179.32 (17)
C9—N8—N7—C1232.6 (2)C9—N10—C14—O4−8.9 (3)
C9—N8—N7—C13−165.91 (16)N11—N10—C14—O4−177.71 (15)
C3—N4—C5—O2−25.0 (3)C9—N10—C14—N12172.96 (16)
N5—N4—C5—O2176.99 (15)N11—N10—C14—N124.2 (2)
C3—N4—C5—N6156.80 (16)N1—N2—C3—N4−4.4 (2)
N5—N4—C5—N6−1.2 (2)N1—N2—C3—C1178.52 (17)
N7—N8—C9—N10−6.1 (2)C5—N4—C3—N2172.45 (16)
N7—N8—C9—C10177.08 (15)N5—N4—C3—N2−29.7 (2)
C14—N10—C9—N8165.74 (17)C5—N4—C3—C1−10.6 (3)
N11—N10—C9—N8−25.7 (2)N5—N4—C3—C1147.23 (18)
C14—N10—C9—C10−17.6 (3)C15—N9—C13—O31.0 (3)
N11—N10—C9—C10150.96 (17)C15—N9—C13—N7178.38 (17)
N10—N11—C12—N7−4.4 (2)C12—N7—C13—O3−19.3 (3)
N10—N11—C12—C11177.61 (16)N8—N7—C13—O3−179.19 (17)
C13—N7—C12—N11173.17 (17)C12—N7—C13—N9163.24 (17)
N8—N7—C12—N11−27.3 (2)N8—N7—C13—N93.3 (2)
C13—N7—C12—C11−8.9 (3)N4—N5—C6—N1−4.2 (2)
N8—N7—C12—C11150.58 (17)N4—N5—C6—C2176.52 (15)
C7—N3—C4—O14.1 (3)C4—N1—C6—N5175.41 (16)
C7—N3—C4—N1−178.51 (17)N2—N1—C6—N5−29.7 (2)
C6—N1—C4—O1−20.2 (3)C4—N1—C6—C2−5.3 (3)
N2—N1—C4—O1−175.36 (16)N2—N1—C6—C2149.51 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3···N20.862.162.572 (2)108
N6—H6···N50.862.192.586 (2)108
N9—H9···N80.862.152.567 (2)109
N12—H12···N110.862.172.581 (2)109
N3—H3···O40.862.202.925 (2)142
N6—H6···O3i0.862.162.918 (2)146
N9—H9···O1ii0.862.142.877 (3)143
N12—H12···O2iii0.862.242.967 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N20.862.162.572 (2)108
N6—H6⋯N50.862.192.586 (2)108
N9—H9⋯N80.862.152.567 (2)109
N12—H12⋯N110.862.172.581 (2)109
N3—H3⋯O40.862.202.925 (2)142
N6—H6⋯O3i0.862.162.918 (2)146
N9—H9⋯O1ii0.862.142.877 (3)143
N12—H12⋯O2iii0.862.242.967 (3)142

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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7.  Toward an understanding of the unexpected regioselective hetero-Diels-Alder reactions of asymmetric tetrazines with electron-rich ethylenes: a DFT study.

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Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

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