| Literature DB >> 22719606 |
Mohamed A Al-Omar, Abdel-Galil E Amr, Hazem A Ghabbour, Tze Shyang Chia, Hoong-Kun Fun.
Abstract
In the title compound, C(15)H(19)N(3)O(6), the amide planes are inclined at dihedral angles of 0.8 (6) and 12.1 (3)° with respect to the central pyridine ring. The mean planes of the corresponding methyl acetate groups form dihedral angles of 41.76 (13) and 86.48 (15)°, respectively with the mean plane of pyridine ring. A pair of weak intra-molecular N-H⋯N hydrogen bonds generate an S(5)S(5) ring motif in the mol-ecule. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds into [001] chains. The chains are cross-linked by C-H⋯O hydrogen bonds into layers lying parallel to bc plane. The crystal packing also features a C-H⋯π inter-action.Entities:
Year: 2012 PMID: 22719606 PMCID: PMC3379408 DOI: 10.1107/S1600536812022258
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H19N3O6 | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 1828 reflections |
| θ = 5.5–70.4° | |
| µ = 0.91 mm−1 | |
| β = 122.901 (3)° | Plate, colourless |
| 0.74 × 0.25 × 0.06 mm | |
| Bruker SMART APEXII CCD diffractometer | 2703 independent reflections |
| Radiation source: fine-focus sealed tube | 2058 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 65.0°, θmin = 5.5° |
| Absorption correction: multi-scan ( | |
| 10358 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2703 reflections | (Δ/σ)max < 0.001 |
| 229 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.1466 (3) | 0.53103 (10) | 0.8205 (2) | 0.0711 (6) | |
| O2 | 0.4090 (3) | 0.56823 (9) | 0.89076 (19) | 0.0641 (5) | |
| O3 | 0.2864 (3) | 0.49181 (10) | 0.7100 (2) | 0.0710 (6) | |
| O4 | 0.2803 (2) | 0.77285 (8) | 1.37663 (16) | 0.0578 (5) | |
| O5 | 0.6292 (4) | 0.83396 (18) | 1.1329 (3) | 0.1239 (11) | |
| O6 | 0.3640 (4) | 0.87058 (11) | 1.0701 (2) | 0.0823 (7) | |
| N1 | 0.0899 (2) | 0.66141 (9) | 1.07033 (18) | 0.0438 (5) | |
| N2 | 0.0839 (3) | 0.58945 (11) | 0.8529 (2) | 0.0602 (6) | |
| N3 | 0.3295 (3) | 0.75674 (9) | 1.1876 (2) | 0.0497 (5) | |
| C1 | 0.0965 (3) | 0.69752 (10) | 1.1805 (2) | 0.0449 (5) | |
| C2 | −0.0180 (4) | 0.68863 (13) | 1.2288 (3) | 0.0584 (7) | |
| H2A | −0.0101 | 0.7145 | 1.3054 | 0.070* | |
| C3 | −0.1448 (4) | 0.64055 (14) | 1.1610 (3) | 0.0638 (7) | |
| H3A | −0.2241 | 0.6337 | 1.1910 | 0.077* | |
| C4 | −0.1521 (4) | 0.60292 (13) | 1.0484 (3) | 0.0572 (6) | |
| H4A | −0.2358 | 0.5701 | 1.0016 | 0.069* | |
| C5 | −0.0334 (3) | 0.61483 (11) | 1.0065 (2) | 0.0471 (5) | |
| C6 | −0.0374 (3) | 0.57458 (12) | 0.8840 (2) | 0.0530 (6) | |
| C7 | 0.0902 (4) | 0.55753 (13) | 0.7325 (3) | 0.0607 (7) | |
| H7A | 0.0229 | 0.5172 | 0.7074 | 0.073* | |
| C8 | 0.2796 (4) | 0.54102 (12) | 0.7893 (3) | 0.0550 (6) | |
| C9 | 0.4596 (4) | 0.46969 (16) | 0.7517 (3) | 0.0766 (8) | |
| H9A | 0.4468 | 0.4353 | 0.6845 | 0.115* | |
| H9B | 0.5236 | 0.4543 | 0.8553 | 0.115* | |
| H9C | 0.5236 | 0.5047 | 0.7430 | 0.115* | |
| C10 | 0.0058 (4) | 0.59893 (17) | 0.5880 (3) | 0.0788 (9) | |
| H10A | −0.1141 | 0.6092 | 0.5555 | 0.118* | |
| H10B | 0.0058 | 0.5755 | 0.5083 | 0.118* | |
| H10C | 0.0726 | 0.6381 | 0.6093 | 0.118* | |
| C11 | 0.2444 (3) | 0.74632 (10) | 1.2579 (2) | 0.0439 (5) | |
| C12 | 0.4982 (3) | 0.79021 (13) | 1.2598 (3) | 0.0566 (6) | |
| H12A | 0.5071 | 0.8179 | 1.3401 | 0.068* | |
| C13 | 0.5066 (5) | 0.83318 (16) | 1.1474 (3) | 0.0723 (9) | |
| C14 | 0.3623 (7) | 0.91492 (19) | 0.9625 (4) | 0.1168 (16) | |
| H14A | 0.2584 | 0.9416 | 0.9187 | 0.175* | |
| H14B | 0.3610 | 0.8911 | 0.8828 | 0.175* | |
| H14C | 0.4665 | 0.9416 | 1.0144 | 0.175* | |
| C15 | 0.6504 (4) | 0.74250 (17) | 1.3363 (4) | 0.0899 (10) | |
| H15A | 0.6515 | 0.7215 | 1.4191 | 0.135* | |
| H15B | 0.7605 | 0.7650 | 1.3753 | 0.135* | |
| H15C | 0.6356 | 0.7107 | 1.2630 | 0.135* | |
| H1N3 | 0.289 (3) | 0.7353 (11) | 1.105 (3) | 0.044 (6)* | |
| H1N2 | 0.151 (4) | 0.6210 (14) | 0.896 (3) | 0.063 (8)* |
| O1 | 0.0754 (13) | 0.0729 (12) | 0.0837 (11) | −0.0269 (10) | 0.0553 (11) | −0.0275 (9) |
| O2 | 0.0620 (12) | 0.0660 (11) | 0.0641 (9) | −0.0096 (9) | 0.0342 (9) | −0.0117 (8) |
| O3 | 0.0754 (14) | 0.0750 (12) | 0.0845 (12) | −0.0149 (10) | 0.0576 (11) | −0.0296 (9) |
| O4 | 0.0738 (12) | 0.0660 (10) | 0.0528 (8) | −0.0078 (9) | 0.0469 (9) | −0.0110 (7) |
| O5 | 0.115 (2) | 0.176 (3) | 0.136 (2) | −0.051 (2) | 0.1048 (19) | −0.031 (2) |
| O6 | 0.1178 (18) | 0.0758 (13) | 0.0865 (12) | −0.0121 (13) | 0.0770 (13) | 0.0060 (10) |
| N1 | 0.0479 (11) | 0.0482 (10) | 0.0445 (9) | 0.0006 (8) | 0.0310 (9) | 0.0015 (7) |
| N2 | 0.0646 (14) | 0.0696 (14) | 0.0651 (11) | −0.0223 (12) | 0.0473 (11) | −0.0253 (10) |
| N3 | 0.0573 (13) | 0.0580 (11) | 0.0470 (9) | −0.0132 (9) | 0.0369 (10) | −0.0131 (8) |
| C1 | 0.0506 (13) | 0.0491 (12) | 0.0440 (9) | 0.0040 (10) | 0.0315 (10) | 0.0047 (8) |
| C2 | 0.0720 (17) | 0.0656 (15) | 0.0631 (12) | −0.0023 (13) | 0.0533 (13) | −0.0044 (10) |
| C3 | 0.0662 (16) | 0.0735 (17) | 0.0811 (15) | −0.0105 (14) | 0.0591 (14) | −0.0040 (12) |
| C4 | 0.0602 (16) | 0.0566 (14) | 0.0705 (14) | −0.0088 (12) | 0.0457 (13) | −0.0010 (10) |
| C5 | 0.0490 (13) | 0.0486 (12) | 0.0503 (10) | 0.0000 (10) | 0.0312 (11) | 0.0019 (9) |
| C6 | 0.0542 (15) | 0.0541 (13) | 0.0569 (11) | −0.0060 (11) | 0.0343 (12) | −0.0062 (10) |
| C7 | 0.0639 (16) | 0.0681 (16) | 0.0653 (13) | −0.0184 (13) | 0.0450 (13) | −0.0261 (11) |
| C8 | 0.0679 (17) | 0.0549 (13) | 0.0589 (12) | −0.0104 (13) | 0.0452 (13) | −0.0090 (10) |
| C9 | 0.085 (2) | 0.083 (2) | 0.0836 (17) | 0.0065 (17) | 0.0600 (17) | −0.0092 (14) |
| C10 | 0.072 (2) | 0.105 (2) | 0.0569 (13) | −0.0048 (18) | 0.0335 (15) | −0.0183 (14) |
| C11 | 0.0519 (13) | 0.0489 (12) | 0.0430 (10) | 0.0039 (10) | 0.0337 (10) | 0.0022 (8) |
| C12 | 0.0583 (15) | 0.0647 (15) | 0.0617 (12) | −0.0148 (12) | 0.0422 (12) | −0.0206 (10) |
| C13 | 0.086 (2) | 0.084 (2) | 0.0764 (16) | −0.0386 (18) | 0.0634 (17) | −0.0317 (15) |
| C14 | 0.197 (5) | 0.094 (2) | 0.095 (2) | −0.044 (3) | 0.103 (3) | −0.0047 (18) |
| C15 | 0.0597 (19) | 0.085 (2) | 0.122 (2) | −0.0032 (16) | 0.0471 (18) | −0.0272 (19) |
| O1—C6 | 1.227 (3) | C4—C5 | 1.375 (3) |
| O2—C8 | 1.204 (3) | C4—H4A | 0.9300 |
| O3—C8 | 1.334 (3) | C5—C6 | 1.507 (3) |
| O3—C9 | 1.442 (4) | C7—C8 | 1.504 (4) |
| O4—C11 | 1.225 (2) | C7—C10 | 1.527 (4) |
| O5—C13 | 1.189 (4) | C7—H7A | 0.9800 |
| O6—C13 | 1.329 (4) | C9—H9A | 0.9600 |
| O6—C14 | 1.441 (3) | C9—H9B | 0.9600 |
| N1—C5 | 1.340 (3) | C9—H9C | 0.9600 |
| N1—C1 | 1.343 (3) | C10—H10A | 0.9600 |
| N2—C6 | 1.329 (3) | C10—H10B | 0.9600 |
| N2—C7 | 1.445 (3) | C10—H10C | 0.9600 |
| N2—H1N2 | 0.83 (3) | C12—C13 | 1.504 (4) |
| N3—C11 | 1.331 (3) | C12—C15 | 1.514 (4) |
| N3—C12 | 1.449 (3) | C12—H12A | 0.9800 |
| N3—H1N3 | 0.85 (2) | C14—H14A | 0.9600 |
| C1—C2 | 1.379 (3) | C14—H14B | 0.9600 |
| C1—C11 | 1.507 (3) | C14—H14C | 0.9600 |
| C2—C3 | 1.383 (4) | C15—H15A | 0.9600 |
| C2—H2A | 0.9300 | C15—H15B | 0.9600 |
| C3—C4 | 1.378 (3) | C15—H15C | 0.9600 |
| C3—H3A | 0.9300 | ||
| C8—O3—C9 | 117.4 (2) | O3—C9—H9A | 109.5 |
| C13—O6—C14 | 116.2 (3) | O3—C9—H9B | 109.5 |
| C5—N1—C1 | 117.75 (19) | H9A—C9—H9B | 109.5 |
| C6—N2—C7 | 121.9 (2) | O3—C9—H9C | 109.5 |
| C6—N2—H1N2 | 119 (2) | H9A—C9—H9C | 109.5 |
| C7—N2—H1N2 | 118 (2) | H9B—C9—H9C | 109.5 |
| C11—N3—C12 | 122.81 (17) | C7—C10—H10A | 109.5 |
| C11—N3—H1N3 | 114.2 (17) | C7—C10—H10B | 109.5 |
| C12—N3—H1N3 | 121.7 (17) | H10A—C10—H10B | 109.5 |
| N1—C1—C2 | 122.7 (2) | C7—C10—H10C | 109.5 |
| N1—C1—C11 | 116.56 (19) | H10A—C10—H10C | 109.5 |
| C2—C1—C11 | 120.61 (19) | H10B—C10—H10C | 109.5 |
| C1—C2—C3 | 118.7 (2) | O4—C11—N3 | 124.5 (2) |
| C1—C2—H2A | 120.7 | O4—C11—C1 | 120.8 (2) |
| C3—C2—H2A | 120.7 | N3—C11—C1 | 114.65 (17) |
| C4—C3—C2 | 119.1 (2) | N3—C12—C13 | 111.0 (2) |
| C4—C3—H3A | 120.4 | N3—C12—C15 | 110.5 (2) |
| C2—C3—H3A | 120.4 | C13—C12—C15 | 112.5 (3) |
| C5—C4—C3 | 118.7 (2) | N3—C12—H12A | 107.5 |
| C5—C4—H4A | 120.6 | C13—C12—H12A | 107.5 |
| C3—C4—H4A | 120.6 | C15—C12—H12A | 107.5 |
| N1—C5—C4 | 123.0 (2) | O5—C13—O6 | 124.6 (3) |
| N1—C5—C6 | 116.8 (2) | O5—C13—C12 | 123.2 (4) |
| C4—C5—C6 | 120.1 (2) | O6—C13—C12 | 112.2 (2) |
| O1—C6—N2 | 124.0 (2) | O6—C14—H14A | 109.5 |
| O1—C6—C5 | 120.5 (2) | O6—C14—H14B | 109.5 |
| N2—C6—C5 | 115.5 (2) | H14A—C14—H14B | 109.5 |
| N2—C7—C8 | 109.3 (2) | O6—C14—H14C | 109.5 |
| N2—C7—C10 | 111.4 (2) | H14A—C14—H14C | 109.5 |
| C8—C7—C10 | 111.4 (2) | H14B—C14—H14C | 109.5 |
| N2—C7—H7A | 108.2 | C12—C15—H15A | 109.5 |
| C8—C7—H7A | 108.2 | C12—C15—H15B | 109.5 |
| C10—C7—H7A | 108.2 | H15A—C15—H15B | 109.5 |
| O2—C8—O3 | 123.6 (2) | C12—C15—H15C | 109.5 |
| O2—C8—C7 | 125.8 (2) | H15A—C15—H15C | 109.5 |
| O3—C8—C7 | 110.6 (2) | H15B—C15—H15C | 109.5 |
| C5—N1—C1—C2 | −0.4 (3) | C9—O3—C8—C7 | −179.5 (2) |
| C5—N1—C1—C11 | 175.80 (18) | N2—C7—C8—O2 | −25.0 (4) |
| N1—C1—C2—C3 | 0.0 (4) | C10—C7—C8—O2 | 98.6 (3) |
| C11—C1—C2—C3 | −176.0 (2) | N2—C7—C8—O3 | 156.0 (2) |
| C1—C2—C3—C4 | 0.4 (4) | C10—C7—C8—O3 | −80.5 (3) |
| C2—C3—C4—C5 | −0.4 (4) | C12—N3—C11—O4 | 13.6 (4) |
| C1—N1—C5—C4 | 0.3 (3) | C12—N3—C11—C1 | −165.8 (2) |
| C1—N1—C5—C6 | −179.55 (19) | N1—C1—C11—O4 | −166.69 (19) |
| C3—C4—C5—N1 | 0.1 (4) | C2—C1—C11—O4 | 9.5 (3) |
| C3—C4—C5—C6 | 179.9 (2) | N1—C1—C11—N3 | 12.8 (3) |
| C7—N2—C6—O1 | 4.1 (4) | C2—C1—C11—N3 | −171.0 (2) |
| C7—N2—C6—C5 | −176.5 (2) | C11—N3—C12—C13 | −141.6 (2) |
| N1—C5—C6—O1 | 180.0 (2) | C11—N3—C12—C15 | 92.8 (3) |
| C4—C5—C6—O1 | 0.1 (4) | C14—O6—C13—O5 | −0.3 (4) |
| N1—C5—C6—N2 | 0.5 (3) | C14—O6—C13—C12 | 178.2 (2) |
| C4—C5—C6—N2 | −179.3 (2) | N3—C12—C13—O5 | −131.9 (3) |
| C6—N2—C7—C8 | −136.0 (3) | C15—C12—C13—O5 | −7.5 (4) |
| C6—N2—C7—C10 | 100.4 (3) | N3—C12—C13—O6 | 49.5 (3) |
| C9—O3—C8—O2 | 1.4 (4) | C15—C12—C13—O6 | 173.9 (2) |
| H··· | ||||
| N3—H1 | 0.85 (3) | 2.23 (3) | 2.676 (3) | 113 (2) |
| N3—H1 | 0.85 (2) | 2.35 (2) | 3.080 (2) | 145 (2) |
| N2—H1 | 0.84 (3) | 2.32 (3) | 2.685 (3) | 107 (3) |
| N2—H1 | 0.83 (3) | 2.55 (3) | 3.290 (3) | 149 (2) |
| C9—H9 | 0.96 | 2.41 | 3.329 (3) | 159 |
| C15—H15 | 0.96 | 2.78 | 3.544 (4) | 137 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/C1–C5 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N3—H1 | 0.85 (3) | 2.23 (3) | 2.676 (3) | 113 (2) |
| N3—H1 | 0.85 (2) | 2.35 (2) | 3.080 (2) | 145 (2) |
| N2—H1 | 0.84 (3) | 2.32 (3) | 2.685 (3) | 107 (3) |
| N2—H1 | 0.83 (3) | 2.55 (3) | 3.290 (3) | 149 (2) |
| C9—H9 | 0.96 | 2.41 | 3.329 (3) | 159 |
| C15—H15 | 0.96 | 2.78 | 3.544 (4) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) .