Literature DB >> 22719585

N,N'-Bis(4-methyl-phen-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Akbar Raissi Shabari, Mehrdad Pourayoubi, Hassan Fadaei, Marek Nečas, Michal Babiak.   

Abstract

The P atom in the title compound, C(16)H(17)Cl(3)N(3)O(2)P, is bonded in a distorted tetra-hedral geometry with the phosphoryl and carbonyl groups anti with respect to one another. In the crystal, mol-ecules are linked through (N-H)(2)⋯O(=P) and N-H⋯O(=C) hydrogen bonds into chains along [001]. The phosphoryl O atom acts as a double hydrogen-bond acceptor.

Entities:  

Year:  2012        PMID: 22719585      PMCID: PMC3379387          DOI: 10.1107/S160053681202154X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For phospho­ric triamides having a C(=O)NHP(=O) skeleton, see: Pourayoubi et al. (2011 ▶). For the definition of a double hydrogen-bond acceptor, see: Steiner (2002 ▶); Pourayoubi et al. (2012 ▶).

Experimental

Crystal data

C16H17Cl3N3O2P M = 420.65 Monoclinic, a = 17.5151 (6) Å b = 10.8638 (4) Å c = 9.8615 (3) Å β = 97.565 (3)° V = 1860.12 (11) Å3 Z = 4 Mo Kα radiation μ = 0.59 mm−1 T = 120 K 0.60 × 0.60 × 0.60 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.955, T max = 1.000 6796 measured reflections 3265 independent reflections 2820 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.072 S = 1.04 3265 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis pan class="Disease">RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004) ▶. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202154X/lh5469sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202154X/lh5469Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17Cl3N3O2PF(000) = 864
Mr = 420.65Dx = 1.502 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5060 reflections
a = 17.5151 (6) Åθ = 3.3–27.7°
b = 10.8638 (4) ŵ = 0.59 mm1
c = 9.8615 (3) ÅT = 120 K
β = 97.565 (3)°Prism, colourless
V = 1860.12 (11) Å30.60 × 0.60 × 0.60 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire2 diffractometer3265 independent reflections
Radiation source: Enhance (Mo) X-ray Source2820 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.013
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 3.5°
ω scanh = −20→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −12→12
Tmin = 0.955, Tmax = 1.000l = −11→11
6796 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.072H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0371P)2 + 0.8844P] where P = (Fo2 + 2Fc2)/3
3265 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.42010 (3)0.60382 (4)0.43562 (4)0.02457 (13)
O10.14643 (7)0.76151 (12)0.35677 (12)0.0207 (3)
P10.17851 (3)0.74597 (4)0.50145 (4)0.01634 (12)
C10.12216 (10)0.51775 (18)0.53131 (17)0.0191 (4)
N10.13973 (9)0.63843 (15)0.58334 (15)0.0190 (3)
Cl20.46136 (3)0.60149 (5)0.72774 (4)0.02712 (13)
O20.30612 (7)0.68782 (12)0.72621 (12)0.0225 (3)
C20.07280 (11)0.5003 (2)0.41018 (18)0.0246 (4)
H20.05320.56920.35730.030*
N20.17663 (9)0.86377 (15)0.60406 (16)0.0187 (3)
Cl30.44563 (3)0.83378 (5)0.58356 (5)0.02685 (13)
C30.05233 (11)0.3820 (2)0.3671 (2)0.0287 (5)
H30.02000.37090.28290.034*
N30.27364 (9)0.71385 (15)0.49795 (15)0.0182 (3)
C40.07772 (11)0.2797 (2)0.4435 (2)0.0292 (5)
C50.12832 (12)0.2987 (2)0.5623 (2)0.0335 (5)
H50.14800.22980.61510.040*
C60.15074 (11)0.41629 (19)0.6055 (2)0.0276 (5)
H60.18590.42700.68650.033*
C70.22672 (10)0.96637 (17)0.60665 (17)0.0180 (4)
C80.25836 (11)1.00236 (18)0.49043 (18)0.0228 (4)
H80.24650.95820.40720.027*
C90.30726 (12)1.10297 (18)0.4972 (2)0.0258 (4)
H90.32961.12530.41800.031*
C100.32484 (11)1.17239 (18)0.61502 (19)0.0250 (4)
C110.29305 (12)1.13365 (19)0.7299 (2)0.0280 (5)
H110.30471.17810.81300.034*
C120.24498 (11)1.03244 (18)0.72679 (18)0.0237 (4)
H120.22441.00810.80720.028*
C130.05026 (13)0.1515 (2)0.4026 (3)0.0414 (6)
H13A0.08350.09080.45500.062*
H13B0.05230.13960.30470.062*
H13C−0.00290.14100.42170.062*
C140.37295 (13)1.2873 (2)0.6172 (2)0.0350 (5)
H14A0.40401.29570.70690.052*
H14B0.33921.35900.59980.052*
H14C0.40711.28190.54620.052*
C150.32379 (10)0.69330 (17)0.61173 (17)0.0175 (4)
C160.40963 (10)0.68105 (17)0.58949 (17)0.0192 (4)
H1N0.1460 (12)0.6449 (19)0.662 (2)0.023 (6)*
H2N0.1638 (12)0.848 (2)0.672 (2)0.026 (6)*
H3N0.2878 (12)0.720 (2)0.430 (2)0.027 (6)*
U11U22U33U12U13U23
Cl10.0236 (2)0.0341 (3)0.0165 (2)0.0062 (2)0.00442 (17)−0.00528 (19)
O10.0204 (6)0.0296 (7)0.0124 (6)−0.0004 (6)0.0027 (5)0.0013 (5)
P10.0169 (2)0.0216 (3)0.0107 (2)−0.0005 (2)0.00235 (17)0.00029 (18)
C10.0155 (9)0.0273 (10)0.0154 (8)−0.0044 (8)0.0054 (7)−0.0026 (8)
N10.0243 (8)0.0253 (9)0.0076 (7)−0.0037 (7)0.0025 (6)−0.0019 (7)
Cl20.0263 (3)0.0359 (3)0.0180 (2)0.0092 (2)−0.00139 (18)0.00249 (19)
O20.0227 (7)0.0329 (8)0.0125 (6)0.0018 (6)0.0047 (5)0.0003 (5)
C20.0218 (10)0.0349 (12)0.0168 (9)−0.0005 (9)0.0010 (7)−0.0019 (8)
N20.0224 (8)0.0230 (9)0.0118 (7)−0.0006 (7)0.0064 (6)0.0011 (7)
Cl30.0271 (3)0.0285 (3)0.0252 (2)−0.0063 (2)0.00431 (19)−0.00010 (19)
C30.0214 (10)0.0447 (13)0.0199 (10)−0.0068 (10)0.0015 (8)−0.0129 (9)
N30.0196 (8)0.0263 (9)0.0099 (8)0.0011 (7)0.0059 (6)0.0006 (6)
C40.0211 (10)0.0318 (12)0.0350 (11)−0.0031 (9)0.0050 (8)−0.0110 (9)
C50.0296 (11)0.0267 (11)0.0411 (12)−0.0014 (10)−0.0065 (9)−0.0007 (10)
C60.0271 (11)0.0277 (11)0.0254 (10)−0.0017 (9)−0.0062 (8)−0.0013 (8)
C70.0173 (9)0.0186 (9)0.0177 (9)0.0027 (8)0.0011 (7)0.0023 (7)
C80.0298 (10)0.0225 (10)0.0164 (9)0.0016 (9)0.0039 (7)0.0014 (8)
C90.0287 (10)0.0237 (11)0.0262 (10)0.0006 (9)0.0080 (8)0.0065 (8)
C100.0216 (10)0.0229 (10)0.0292 (10)0.0010 (8)−0.0018 (8)0.0059 (8)
C110.0352 (11)0.0249 (11)0.0220 (10)−0.0029 (9)−0.0033 (8)−0.0010 (8)
C120.0289 (10)0.0259 (10)0.0160 (9)−0.0006 (9)0.0025 (7)0.0020 (8)
C130.0329 (12)0.0363 (13)0.0537 (15)−0.0078 (11)0.0003 (11)−0.0157 (11)
C140.0323 (12)0.0326 (12)0.0386 (12)−0.0074 (10)−0.0010 (9)0.0042 (10)
C150.0205 (9)0.0174 (9)0.0146 (9)0.0002 (8)0.0026 (7)−0.0012 (7)
C160.0206 (9)0.0226 (10)0.0144 (9)0.0007 (8)0.0024 (7)−0.0014 (7)
Cl1—C161.7644 (18)C5—C61.387 (3)
O1—P11.4727 (12)C5—H50.9500
P1—N11.6195 (16)C6—H60.9500
P1—N21.6345 (16)C7—C121.386 (3)
P1—N31.7071 (16)C7—C81.393 (2)
C1—C61.380 (3)C8—C91.385 (3)
C1—C21.392 (2)C8—H80.9500
C1—N11.427 (2)C9—C101.385 (3)
N1—H1N0.77 (2)C9—H90.9500
Cl2—C161.7611 (18)C10—C111.392 (3)
O2—C151.211 (2)C10—C141.505 (3)
C2—C31.386 (3)C11—C121.383 (3)
C2—H20.9500C11—H110.9500
N2—C71.417 (2)C12—H120.9500
N2—H2N0.76 (2)C13—H13A0.9800
Cl3—C161.7786 (19)C13—H13B0.9800
C3—C41.383 (3)C13—H13C0.9800
C3—H30.9500C14—H14A0.9800
N3—C151.349 (2)C14—H14B0.9800
N3—H3N0.75 (2)C14—H14C0.9800
C4—C51.388 (3)C15—C161.553 (2)
C4—C131.510 (3)
O1—P1—N1115.74 (8)C9—C8—C7119.49 (18)
O1—P1—N2118.28 (8)C9—C8—H8120.3
N1—P1—N2102.25 (8)C7—C8—H8120.3
O1—P1—N3104.64 (7)C8—C9—C10122.55 (18)
N1—P1—N3109.71 (8)C8—C9—H9118.7
N2—P1—N3105.77 (8)C10—C9—H9118.7
C6—C1—C2119.16 (18)C9—C10—C11116.71 (18)
C6—C1—N1119.83 (16)C9—C10—C14121.72 (18)
C2—C1—N1120.91 (17)C11—C10—C14121.51 (18)
C1—N1—P1124.64 (12)C12—C11—C10122.02 (18)
C1—N1—H1N116.1 (16)C12—C11—H11119.0
P1—N1—H1N114.9 (16)C10—C11—H11119.0
C3—C2—C1119.68 (19)C11—C12—C7120.13 (17)
C3—C2—H2120.2C11—C12—H12119.9
C1—C2—H2120.2C7—C12—H12119.9
C7—N2—P1124.35 (12)C4—C13—H13A109.5
C7—N2—H2N114.8 (17)C4—C13—H13B109.5
P1—N2—H2N113.8 (17)H13A—C13—H13B109.5
C4—C3—C2121.81 (18)C4—C13—H13C109.5
C4—C3—H3119.1H13A—C13—H13C109.5
C2—C3—H3119.1H13B—C13—H13C109.5
C15—N3—P1123.18 (13)C10—C14—H14A109.5
C15—N3—H3N120.2 (17)C10—C14—H14B109.5
P1—N3—H3N116.2 (17)H14A—C14—H14B109.5
C3—C4—C5117.62 (19)C10—C14—H14C109.5
C3—C4—C13121.82 (19)H14A—C14—H14C109.5
C5—C4—C13120.5 (2)H14B—C14—H14C109.5
C6—C5—C4121.3 (2)O2—C15—N3124.41 (16)
C6—C5—H5119.3O2—C15—C16119.89 (15)
C4—C5—H5119.3N3—C15—C16115.66 (14)
C1—C6—C5120.31 (18)C15—C16—Cl2109.98 (12)
C1—C6—H6119.8C15—C16—Cl1111.97 (12)
C5—C6—H6119.8Cl2—C16—Cl1109.34 (10)
C12—C7—C8119.06 (17)C15—C16—Cl3106.17 (12)
C12—C7—N2119.70 (16)Cl2—C16—Cl3109.57 (10)
C8—C7—N2121.24 (16)Cl1—C16—Cl3109.75 (9)
C6—C1—N1—P1125.17 (17)P1—N2—C7—C12−152.11 (15)
C2—C1—N1—P1−58.6 (2)P1—N2—C7—C827.7 (2)
O1—P1—N1—C144.72 (17)C12—C7—C8—C90.0 (3)
N2—P1—N1—C1174.73 (14)N2—C7—C8—C9−179.82 (17)
N3—P1—N1—C1−73.35 (16)C7—C8—C9—C10−1.7 (3)
C6—C1—C2—C30.9 (3)C8—C9—C10—C112.3 (3)
N1—C1—C2—C3−175.35 (16)C8—C9—C10—C14−174.99 (19)
O1—P1—N2—C7−75.36 (16)C9—C10—C11—C12−1.3 (3)
N1—P1—N2—C7156.22 (14)C14—C10—C11—C12176.03 (19)
N3—P1—N2—C741.39 (16)C10—C11—C12—C7−0.3 (3)
C1—C2—C3—C42.0 (3)C8—C7—C12—C111.0 (3)
O1—P1—N3—C15179.94 (15)N2—C7—C12—C11−179.19 (17)
N1—P1—N3—C15−55.29 (17)P1—N3—C15—O24.8 (3)
N2—P1—N3—C1554.30 (17)P1—N3—C15—C16−172.98 (13)
C2—C3—C4—C5−3.5 (3)O2—C15—C16—Cl223.4 (2)
C2—C3—C4—C13174.88 (19)N3—C15—C16—Cl2−158.68 (14)
C3—C4—C5—C62.1 (3)O2—C15—C16—Cl1145.21 (15)
C13—C4—C5—C6−176.3 (2)N3—C15—C16—Cl1−36.9 (2)
C2—C1—C6—C5−2.3 (3)O2—C15—C16—Cl3−95.03 (18)
N1—C1—C6—C5174.01 (18)N3—C15—C16—Cl382.86 (17)
C4—C5—C6—C10.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.77 (2)2.17 (2)2.8953 (19)156 (2)
N2—H2N···O1i0.76 (2)2.23 (2)2.948 (2)159 (2)
N3—H3N···O2ii0.75 (2)2.31 (2)3.008 (2)157 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.77 (2)2.17 (2)2.8953 (19)156 (2)
N2—H2N⋯O1i0.76 (2)2.23 (2)2.948 (2)159 (2)
N3—H3N⋯O2ii0.75 (2)2.31 (2)3.008 (2)157 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  The double H-atom acceptability of the P=O group in new XP(O)(NHCH2C6H4-2-Cl)2 phosphoramidates [X = C6H5O- and CF3C(O)NH-]: a database analysis of compounds having a P(O)(NHR) group.

Authors:  Mehrdad Pourayoubi; Marek Nečas; Monireh Negari
Journal:  Acta Crystallogr C       Date:  2012-01-06       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Anahid Saneei; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

  3 in total
  1 in total

1.  N-(4-Fluoro-benzo-yl)-N',N''-diisopropyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24
  1 in total

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