Literature DB >> 22719572

2,2'-(Piperazine-1,4-di-yl)diacetonitrile.

Wei Gao1, Jing Yang, Xin-Ling Wang, Ning Zhou, Xue-Fen Wu.   

Abstract

The complete mol-ecule of the title compound, C(8)H(12)N(4), is generated by a crystallographic inversion centre. The piperazine ring adopts a chair conformation with the N-bonded substituents in equatorial positions. In the crystal, mol-ecules are linked by C-H⋯N(c) (c = cyanide) hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719572      PMCID: PMC3379374          DOI: 10.1107/S1600536812021733

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ma et al. (2007 ▶); Liu & Liu (2011 ▶); Luo & Weng (2011 ▶).

Experimental

Crystal data

C8H12N4 M = 164.22 Monoclinic, a = 6.3452 (13) Å b = 6.6731 (13) Å c = 11.077 (2) Å β = 95.61 (3)° V = 466.78 (16) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.985, T max = 0.992 3739 measured reflections 1076 independent reflections 835 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.150 S = 1.05 1076 reflections 55 parameters H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021733/hb6795sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021733/hb6795Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021733/hb6795Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N4F(000) = 176
Mr = 164.22Dx = 1.168 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.3452 (13) ÅCell parameters from 1156 reflections
b = 6.6731 (13) Åθ = 3.1–27.8°
c = 11.077 (2) ŵ = 0.08 mm1
β = 95.61 (3)°T = 293 K
V = 466.78 (16) Å3Block, colorless
Z = 20.20 × 0.18 × 0.10 mm
Rigaku Saturn CCD diffractometer1076 independent reflections
Radiation source: rotating anode835 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.032
ω scansθmax = 27.9°, θmin = 6.4°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)h = −8→5
Tmin = 0.985, Tmax = 0.992k = −8→8
3739 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0937P)2 + 0.0176P] where P = (Fo2 + 2Fc2)/3
1076 reflections(Δ/σ)max < 0.001
55 parametersΔρmax = 0.10 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.06045 (14)0.54542 (14)0.12377 (8)0.0464 (4)
N20.3536 (2)0.9796 (2)0.16532 (15)0.0904 (6)
C1−0.21559 (17)0.52728 (19)−0.04400 (11)0.0497 (4)
H1A−0.28230.4143−0.00780.060*
H1B−0.32490.6036−0.09100.060*
C2−0.10710 (17)0.65762 (18)0.05439 (11)0.0499 (4)
H2A−0.04740.77460.01840.060*
H2B−0.20950.70300.10790.060*
C30.1569 (2)0.6568 (2)0.22683 (12)0.0584 (4)
H3A0.25620.57010.27410.070*
H3B0.04760.69450.27790.070*
C40.2700 (2)0.8402 (2)0.19376 (13)0.0647 (4)
U11U22U33U12U13U23
N10.0471 (6)0.0463 (6)0.0461 (5)0.0023 (4)0.0062 (4)−0.0010 (4)
N20.0816 (10)0.0743 (10)0.1129 (13)−0.0215 (7)−0.0029 (9)−0.0028 (8)
C10.0410 (6)0.0516 (7)0.0570 (7)0.0054 (4)0.0062 (5)−0.0018 (5)
C20.0465 (6)0.0479 (7)0.0561 (7)0.0087 (4)0.0092 (5)−0.0032 (5)
C30.0657 (8)0.0575 (8)0.0512 (7)−0.0009 (6)0.0013 (5)−0.0049 (5)
C40.0592 (8)0.0618 (9)0.0707 (9)−0.0035 (6)−0.0057 (6)−0.0112 (7)
N1—C31.4471 (16)C1—H1B0.9700
N1—C21.4567 (15)C2—H2A0.9700
N1—C1i1.4680 (14)C2—H2B0.9700
N2—C41.1305 (19)C3—C41.4824 (19)
C1—N1i1.4681 (14)C3—H3A0.9700
C1—C21.5071 (17)C3—H3B0.9700
C1—H1A0.9700
C3—N1—C2112.51 (10)C1—C2—H2A109.6
C3—N1—C1i112.82 (9)N1—C2—H2B109.6
C2—N1—C1i110.49 (9)C1—C2—H2B109.6
N1i—C1—C2109.89 (9)H2A—C2—H2B108.2
N1i—C1—H1A109.7N1—C3—C4114.00 (10)
C2—C1—H1A109.7N1—C3—H3A108.8
N1i—C1—H1B109.7C4—C3—H3A108.8
C2—C1—H1B109.7N1—C3—H3B108.8
H1A—C1—H1B108.2C4—C3—H3B108.8
N1—C2—C1110.06 (9)H3A—C3—H3B107.6
N1—C2—H2A109.6N2—C4—C3178.07 (16)
C3—N1—C2—C1−174.46 (8)C2—N1—C3—C4−64.42 (14)
C1i—N1—C2—C158.45 (13)C1i—N1—C3—C461.41 (14)
N1i—C1—C2—N1−58.10 (13)N1—C3—C4—N213 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3A···N2ii0.972.573.427 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯N2i0.972.573.427 (2)147

Symmetry code: (i) .

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