Literature DB >> 22719564

rac-(3S,4Z)-3-Chloro-4-[2-(3-fluoro-benzyl-idene)hydrazinyl-idene]-1-methyl-3,4-dihydro-1H-2λ(6),1-benzothia-zine-2,2-dione.

Muhammad Shafiq, M Nawaz Tahir, Islam Ullah Khan, Saeed Ahmad.   

Abstract

In the title compound, C(16)H(13)ClFN(3)O(2)S, the dihedral angle between the benzene rings is 4.47 (3)°. The conformation of the thia-zine ring is a half-chair and the Cl atom is in an axial orientation. In the crystal, mol-ecules are linked by C-H⋯F inter-actions, generating C(12) chains propagating in [011]. Aromatic π-π stacking inter-actions [centroid-centroid separations = 3.753 (2) and 3.758 (2) Å] also occur.

Entities:  

Year:  2012        PMID: 22719564      PMCID: PMC3379366          DOI: 10.1107/S1600536812021654

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references, see: Shafiq et al. (2012 ▶). For further synthetic details, see: Shafiq et al. (2011 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H13ClFN3O2S M = 365.80 Triclinic, a = 7.0072 (3) Å b = 8.9402 (4) Å c = 13.3438 (6) Å α = 98.184 (3)° β = 90.510 (2)° γ = 98.389 (3)° V = 818.19 (6) Å3 Z = 2 Mo Kα radiation μ = 0.39 mm−1 T = 296 K 0.26 × 0.18 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.930, T max = 0.960 11874 measured reflections 2941 independent reflections 1744 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.120 S = 1.00 2941 reflections 218 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021654/hb6778sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021654/hb6778Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021654/hb6778Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13ClFN3O2SZ = 2
Mr = 365.80F(000) = 376
Triclinic, P1Dx = 1.485 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0072 (3) ÅCell parameters from 1744 reflections
b = 8.9402 (4) Åθ = 2.3–25.3°
c = 13.3438 (6) ŵ = 0.39 mm1
α = 98.184 (3)°T = 296 K
β = 90.510 (2)°Needle, yellow
γ = 98.389 (3)°0.26 × 0.18 × 0.12 mm
V = 818.19 (6) Å3
Bruker Kappa APEXII CCD diffractometer2941 independent reflections
Radiation source: fine-focus sealed tube1744 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.065
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.3°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.930, Tmax = 0.960l = −16→16
11874 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0478P)2 + 0.0889P] where P = (Fo2 + 2Fc2)/3
2941 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49246 (13)0.08066 (10)0.23725 (7)0.0532 (4)
S10.86510 (13)0.02559 (10)0.15593 (7)0.0428 (3)
F10.8027 (4)0.4684 (3)0.88468 (18)0.0894 (11)
O11.0538 (3)0.0163 (3)0.19335 (18)0.0532 (9)
O20.8416 (4)0.1283 (3)0.08580 (18)0.0561 (10)
N10.7533 (4)−0.1425 (3)0.1110 (2)0.0426 (10)
N20.7629 (4)−0.0292 (3)0.4293 (2)0.0459 (11)
N30.7744 (4)0.1263 (3)0.4676 (2)0.0483 (11)
C10.7272 (4)−0.2167 (3)0.2815 (3)0.0336 (11)
C20.7020 (5)−0.3359 (4)0.3404 (3)0.0450 (12)
C30.6839 (5)−0.4857 (4)0.2968 (3)0.0516 (16)
C40.6917 (5)−0.5215 (4)0.1934 (3)0.0523 (16)
C50.7157 (5)−0.4082 (4)0.1340 (3)0.0478 (12)
C60.7322 (4)−0.2558 (4)0.1761 (3)0.0365 (12)
C70.7362 (4)0.0683 (4)0.2675 (2)0.0369 (12)
C80.7431 (4)−0.0574 (3)0.3326 (3)0.0349 (11)
C90.7800 (5)0.1472 (4)0.5641 (3)0.0460 (14)
C100.7926 (5)0.2996 (4)0.6232 (3)0.0403 (12)
C110.7939 (5)0.3134 (4)0.7280 (3)0.0446 (12)
C120.8044 (5)0.4569 (5)0.7816 (3)0.0509 (14)
C130.8143 (5)0.5861 (4)0.7388 (3)0.0555 (16)
C140.8139 (6)0.5733 (5)0.6347 (3)0.0616 (17)
C150.8029 (5)0.4312 (4)0.5773 (3)0.0520 (16)
C160.6640 (7)−0.1733 (4)0.0094 (3)0.0738 (19)
H20.69751−0.312730.410450.0537*
H30.66630−0.563070.337010.0617*
H40.68056−0.623140.163780.0630*
H50.72107−0.433690.064120.0575*
H70.797120.166030.305130.0445*
H90.775930.062990.598090.0550*
H110.787730.227870.760880.0531*
H130.821120.681010.778690.0670*
H140.821100.660310.603280.0737*
H150.802410.422900.507000.0627*
H16A0.73119−0.24304−0.033050.1104*
H16B0.67065−0.07948−0.018410.1104*
H16C0.53138−0.217680.013000.1104*
U11U22U33U12U13U23
Cl10.0468 (6)0.0544 (6)0.0638 (7)0.0169 (5)0.0014 (5)0.0171 (5)
S10.0479 (6)0.0375 (6)0.0431 (6)0.0047 (4)0.0054 (4)0.0072 (4)
F10.118 (2)0.096 (2)0.0487 (17)0.0188 (16)0.0047 (15)−0.0117 (13)
O10.0366 (14)0.0522 (16)0.0688 (18)0.0026 (12)0.0021 (13)0.0062 (14)
O20.0778 (19)0.0452 (16)0.0494 (17)0.0094 (13)0.0105 (14)0.0197 (13)
N10.0589 (19)0.0380 (18)0.0290 (17)0.0038 (14)−0.0007 (14)0.0021 (14)
N20.062 (2)0.0408 (19)0.0339 (19)0.0118 (15)−0.0019 (15)−0.0016 (14)
N30.070 (2)0.0406 (19)0.0321 (19)0.0104 (16)−0.0009 (16)−0.0043 (14)
C10.0342 (19)0.031 (2)0.035 (2)0.0057 (15)−0.0041 (16)0.0025 (16)
C20.049 (2)0.044 (2)0.042 (2)0.0071 (18)−0.0016 (18)0.0060 (19)
C30.059 (3)0.038 (2)0.059 (3)0.0051 (19)−0.007 (2)0.014 (2)
C40.064 (3)0.032 (2)0.059 (3)0.0044 (19)−0.007 (2)0.004 (2)
C50.057 (2)0.044 (2)0.040 (2)0.0084 (19)0.0006 (19)−0.0031 (19)
C60.038 (2)0.036 (2)0.035 (2)0.0062 (16)−0.0027 (16)0.0032 (17)
C70.040 (2)0.034 (2)0.034 (2)0.0038 (16)0.0010 (16)−0.0024 (16)
C80.0325 (19)0.035 (2)0.036 (2)0.0037 (15)−0.0034 (16)0.0025 (16)
C90.048 (2)0.047 (2)0.043 (3)0.0120 (18)0.0026 (19)0.0019 (19)
C100.041 (2)0.046 (2)0.032 (2)0.0069 (17)0.0038 (16)−0.0009 (18)
C110.049 (2)0.047 (2)0.036 (2)0.0043 (18)0.0045 (18)0.0031 (18)
C120.054 (2)0.066 (3)0.027 (2)0.006 (2)0.0025 (18)−0.010 (2)
C130.055 (3)0.042 (2)0.065 (3)0.007 (2)0.006 (2)−0.008 (2)
C140.071 (3)0.056 (3)0.056 (3)0.007 (2)0.003 (2)0.005 (2)
C150.062 (3)0.053 (3)0.039 (2)0.006 (2)0.0028 (19)0.002 (2)
C160.123 (4)0.056 (3)0.039 (3)0.002 (3)−0.016 (3)0.008 (2)
Cl1—C71.774 (3)C10—C111.386 (6)
S1—O11.427 (2)C10—C151.395 (5)
S1—O21.426 (3)C11—C121.369 (6)
S1—N11.620 (3)C12—C131.353 (6)
S1—C71.772 (3)C13—C141.377 (6)
F1—C121.365 (5)C14—C151.378 (6)
N1—C61.418 (5)C2—H20.9300
N1—C161.461 (5)C3—H30.9300
N2—N31.402 (4)C4—H40.9300
N2—C81.281 (5)C5—H50.9300
N3—C91.274 (5)C7—H70.9800
C1—C21.404 (5)C9—H90.9300
C1—C61.402 (6)C11—H110.9300
C1—C81.477 (4)C13—H130.9300
C2—C31.370 (5)C14—H140.9300
C3—C41.375 (6)C15—H150.9300
C4—C51.365 (5)C16—H16A0.9600
C5—C61.386 (5)C16—H16B0.9600
C7—C81.521 (5)C16—H16C0.9600
C9—C101.464 (5)
O1—S1—O2119.60 (17)F1—C12—C13118.7 (4)
O1—S1—N1110.77 (16)C11—C12—C13124.2 (4)
O1—S1—C7103.50 (14)C12—C13—C14118.3 (4)
O2—S1—N1108.96 (15)C13—C14—C15119.8 (4)
O2—S1—C7111.18 (16)C10—C15—C14120.9 (4)
N1—S1—C7101.18 (15)C1—C2—H2119.00
S1—N1—C6117.9 (2)C3—C2—H2119.00
S1—N1—C16121.1 (2)C2—C3—H3120.00
C6—N1—C16120.9 (3)C4—C3—H3120.00
N3—N2—C8113.5 (3)C3—C4—H4120.00
N2—N3—C9111.1 (3)C5—C4—H4120.00
C2—C1—C6117.8 (3)C4—C5—H5119.00
C2—C1—C8118.9 (3)C6—C5—H5119.00
C6—C1—C8123.2 (3)Cl1—C7—H7109.00
C1—C2—C3121.3 (4)S1—C7—H7109.00
C2—C3—C4119.9 (3)C8—C7—H7109.00
C3—C4—C5120.2 (3)N3—C9—H9119.00
C4—C5—C6121.1 (4)C10—C9—H9119.00
N1—C6—C1121.4 (3)C10—C11—H11121.00
N1—C6—C5118.9 (3)C12—C11—H11121.00
C1—C6—C5119.7 (3)C12—C13—H13121.00
Cl1—C7—S1110.70 (15)C14—C13—H13121.00
Cl1—C7—C8109.6 (2)C13—C14—H14120.00
S1—C7—C8108.8 (2)C15—C14—H14120.00
N2—C8—C1119.6 (3)C10—C15—H15120.00
N2—C8—C7122.2 (3)C14—C15—H15120.00
C1—C8—C7118.2 (3)N1—C16—H16A109.00
N3—C9—C10122.1 (3)N1—C16—H16B109.00
C9—C10—C11118.9 (3)N1—C16—H16C109.00
C9—C10—C15122.0 (4)H16A—C16—H16B110.00
C11—C10—C15119.0 (3)H16A—C16—H16C109.00
C10—C11—C12117.9 (3)H16B—C16—H16C109.00
F1—C12—C11117.2 (4)
O1—S1—N1—C656.5 (3)C2—C1—C8—C7−169.8 (3)
O2—S1—N1—C6−170.0 (2)C8—C1—C2—C3179.1 (3)
C7—S1—N1—C6−52.8 (3)C6—C1—C2—C30.4 (5)
O1—S1—N1—C16−128.2 (3)C6—C1—C8—N2−170.9 (3)
O2—S1—N1—C165.4 (3)C1—C2—C3—C40.5 (5)
C7—S1—N1—C16122.6 (3)C2—C3—C4—C5−0.6 (5)
N1—S1—C7—Cl1−63.9 (2)C3—C4—C5—C6−0.1 (5)
O1—S1—C7—C8−58.3 (2)C4—C5—C6—N1−178.8 (3)
O2—S1—C7—C8172.1 (2)C4—C5—C6—C11.0 (5)
N1—S1—C7—C856.5 (2)Cl1—C7—C8—N2−97.9 (3)
O1—S1—C7—Cl1−178.68 (18)Cl1—C7—C8—C182.4 (3)
O2—S1—C7—Cl151.7 (2)S1—C7—C8—N2141.0 (3)
C16—N1—C6—C531.8 (5)S1—C7—C8—C1−38.7 (3)
S1—N1—C6—C5−152.9 (3)N3—C9—C10—C11178.6 (3)
S1—N1—C6—C127.3 (4)N3—C9—C10—C15−1.2 (5)
C16—N1—C6—C1−148.0 (3)C9—C10—C11—C12−179.6 (3)
C8—N2—N3—C9175.3 (3)C15—C10—C11—C120.3 (5)
N3—N2—C8—C1−179.5 (3)C9—C10—C15—C14179.7 (4)
N3—N2—C8—C70.9 (4)C11—C10—C15—C14−0.1 (5)
N2—N3—C9—C10179.9 (3)C10—C11—C12—F1179.1 (3)
C2—C1—C6—N1178.7 (3)C10—C11—C12—C13−0.3 (6)
C2—C1—C6—C5−1.1 (4)F1—C12—C13—C14−179.3 (3)
C8—C1—C6—N10.0 (4)C11—C12—C13—C140.0 (6)
C8—C1—C6—C5−179.8 (3)C12—C13—C14—C150.2 (6)
C6—C1—C8—C78.9 (4)C13—C14—C15—C10−0.2 (6)
C2—C1—C8—N210.5 (4)
D—H···AD—HH···AD···AD—H···A
C5—H5···F1i0.932.533.442 (5)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯F1i0.932.533.442 (5)167

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (3S,4Z)-3-Chloro-1-methyl-4-[(2E)-(3-methyl-benzyl-idene)hydrazinyl-idene]-3,4-dihydro-1H-2,1-benzothia-zine 2,2-dioxide.

Authors:  Muhammad Shafiq; M Nawaz Tahir; Islam Ullah Khan; Muhammad Zia-Ur-Rehman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  4-[2-(Anthracen-9-yl-methyl-idene)hydrazinyl-idene]-3-chloro-1-methyl-3,4-dihydro-1H-2λ(6),1-benzothia-zine-2,2-dione.

Authors:  Muhammad Shafiq; M Nawaz Tahir; Islam Ullah Khan; Tanveer Hussain Bokhari; Muhammad Nadeem Asghar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  1 in total

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