Literature DB >> 22719561

5-[1-(4-Meth-oxy-phen-yl)-2-nitro-but-yl]-4-phenyl-1,2,3-selenadiazole.

P Sugumar, S Sankari, P Manisankar, M N Ponnuswamy.   

Abstract

In the title compound, C(19)H(19)N(3)O(3)Se, the selenadiazole ring is essentially planar (r.m.s. deviation = 0.001 Å). The heterocyclic ring makes dihedral angles of 50.2 (2) and 76.3 (9)°, respectively, with the meth-oxy-phenyl and phenyl rings.

Entities:  

Year:  2012        PMID: 22719561      PMCID: PMC3379363          DOI: 10.1107/S1600536812020752

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to selenadiazol derivatives, see: Cuvardic (2003 ▶); El-Bahaie et al. (1990 ▶); El-Kashef et al. (1986 ▶); Kuroda et al. (2001 ▶); Khanna (2005 ▶); Padmavathi et al. (2002 ▶); Plano et al. (2010 ▶); Stadtman (1991 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H19N3O3Se M = 416.33 Triclinic, a = 8.3072 (5) Å b = 8.5468 (5) Å c = 13.6969 (9) Å α = 81.293 (3)° β = 79.670 (3)° γ = 78.888 (3)° V = 931.88 (10) Å3 Z = 2 Mo Kα radiation μ = 2.04 mm−1 T = 293 K 0.24 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.607, T max = 0.693 16582 measured reflections 4605 independent reflections 3605 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.080 S = 1.02 4605 reflections 237 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020752/bt5896sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020752/bt5896Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020752/bt5896Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19N3O3SeZ = 2
Mr = 416.33F(000) = 424
Triclinic, P1Dx = 1.484 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3072 (5) ÅCell parameters from 3605 reflections
b = 8.5468 (5) Åθ = 1.5–28.3°
c = 13.6969 (9) ŵ = 2.04 mm1
α = 81.293 (3)°T = 293 K
β = 79.670 (3)°Block, colourless
γ = 78.888 (3)°0.24 × 0.20 × 0.18 mm
V = 931.88 (10) Å3
Bruker SMART APEX CCD detector diffractometer4605 independent reflections
Radiation source: fine-focus sealed tube3605 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω scansθmax = 28.3°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.607, Tmax = 0.693k = −11→11
16582 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0368P)2 + 0.2368P] where P = (Fo2 + 2Fc2)/3
4605 reflections(Δ/σ)max = 0.021
237 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7080 (3)0.1143 (2)−0.00387 (15)0.0532 (5)
H10.64850.03050.01780.064*
C20.8475 (3)0.0937 (3)−0.07483 (17)0.0673 (6)
H20.8810−0.0037−0.10110.081*
C30.9378 (3)0.2151 (3)−0.10723 (17)0.0697 (6)
H31.03370.1992−0.15400.084*
C40.8857 (3)0.3608 (3)−0.07019 (15)0.0619 (5)
H40.94530.4442−0.09300.074*
C50.7454 (3)0.3830 (2)0.00070 (13)0.0502 (4)
H50.71080.48160.02530.060*
C60.6551 (2)0.2590 (2)0.03568 (12)0.0427 (4)
C70.5064 (2)0.27772 (19)0.11255 (13)0.0420 (4)
C80.4926 (2)0.33050 (19)0.20352 (13)0.0414 (4)
C90.6313 (2)0.37263 (19)0.24707 (12)0.0403 (4)
H90.71900.39320.19090.048*
C100.7054 (2)0.23002 (19)0.31467 (12)0.0404 (4)
C110.8557 (2)0.1404 (2)0.28056 (14)0.0514 (4)
H110.91220.17250.21800.062*
C120.9254 (3)0.0033 (3)0.33688 (16)0.0582 (5)
H121.0266−0.05580.31180.070*
C130.8438 (3)−0.0443 (2)0.42993 (15)0.0516 (5)
C140.6949 (3)0.0457 (2)0.46637 (14)0.0557 (5)
H140.64060.01510.52990.067*
C150.6259 (2)0.1806 (2)0.40976 (14)0.0500 (4)
H150.52490.23950.43530.060*
C160.5739 (2)0.5295 (2)0.29509 (14)0.0461 (4)
H160.47540.51910.34540.055*
C170.5340 (3)0.6751 (2)0.21955 (17)0.0648 (6)
H17A0.44260.66060.18850.078*
H17B0.62960.68010.16760.078*
C180.4881 (4)0.8345 (3)0.2628 (2)0.0881 (8)
H18A0.39730.82910.31680.132*
H18B0.45590.91890.21170.132*
H18C0.58210.85600.28710.132*
C191.0446 (4)−0.2802 (3)0.4575 (2)0.0879 (9)
H19A1.0289−0.32080.39890.132*
H19B1.0674−0.36810.50850.132*
H19C1.1362−0.22270.44130.132*
N10.2397 (2)0.2408 (2)0.16056 (14)0.0591 (4)
N20.3652 (2)0.23047 (18)0.09389 (13)0.0521 (4)
N30.7123 (2)0.55482 (18)0.34525 (13)0.0539 (4)
O10.6804 (2)0.5740 (2)0.43322 (12)0.0790 (5)
O20.8482 (2)0.5549 (2)0.29537 (14)0.0783 (5)
O30.8996 (2)−0.17608 (19)0.49253 (13)0.0751 (5)
Se10.28223 (2)0.31972 (3)0.272539 (16)0.06042 (9)
U11U22U33U12U13U23
C10.0558 (11)0.0459 (10)0.0621 (11)−0.0131 (9)−0.0071 (9)−0.0166 (8)
C20.0680 (14)0.0640 (13)0.0723 (14)−0.0091 (11)0.0006 (11)−0.0321 (11)
C30.0630 (13)0.0850 (16)0.0616 (13)−0.0177 (12)0.0069 (10)−0.0240 (11)
C40.0698 (14)0.0678 (13)0.0506 (11)−0.0279 (11)0.0000 (10)−0.0061 (9)
C50.0643 (12)0.0443 (9)0.0439 (9)−0.0139 (9)−0.0083 (8)−0.0061 (7)
C60.0469 (10)0.0421 (9)0.0420 (9)−0.0074 (8)−0.0123 (7)−0.0075 (7)
C70.0456 (9)0.0330 (8)0.0498 (9)−0.0083 (7)−0.0110 (8)−0.0059 (7)
C80.0410 (9)0.0364 (8)0.0463 (9)−0.0066 (7)−0.0057 (7)−0.0048 (7)
C90.0416 (9)0.0411 (8)0.0390 (8)−0.0101 (7)−0.0025 (7)−0.0083 (7)
C100.0412 (9)0.0425 (9)0.0402 (8)−0.0110 (7)−0.0049 (7)−0.0104 (7)
C110.0456 (10)0.0617 (11)0.0437 (9)−0.0043 (9)−0.0015 (8)−0.0088 (8)
C120.0499 (11)0.0595 (12)0.0630 (12)0.0062 (9)−0.0124 (9)−0.0161 (10)
C130.0604 (12)0.0458 (10)0.0563 (11)−0.0158 (9)−0.0253 (9)−0.0028 (8)
C140.0620 (12)0.0632 (12)0.0448 (10)−0.0249 (10)−0.0085 (9)0.0025 (9)
C150.0458 (10)0.0560 (11)0.0463 (10)−0.0097 (8)0.0013 (8)−0.0091 (8)
C160.0446 (10)0.0443 (9)0.0524 (10)−0.0090 (8)−0.0085 (8)−0.0119 (8)
C170.0813 (16)0.0468 (11)0.0701 (14)−0.0062 (10)−0.0249 (12)−0.0093 (10)
C180.113 (2)0.0459 (12)0.107 (2)0.0026 (13)−0.0318 (18)−0.0174 (12)
C190.0873 (19)0.0537 (13)0.134 (2)−0.0043 (13)−0.0648 (18)0.0000 (14)
N10.0493 (9)0.0564 (10)0.0787 (12)−0.0193 (8)−0.0129 (9)−0.0136 (8)
N20.0518 (9)0.0449 (8)0.0661 (10)−0.0138 (7)−0.0157 (8)−0.0117 (7)
N30.0590 (10)0.0465 (8)0.0613 (10)−0.0122 (8)−0.0142 (8)−0.0126 (7)
O10.0894 (12)0.0929 (12)0.0644 (10)−0.0116 (10)−0.0205 (9)−0.0349 (9)
O20.0577 (9)0.0962 (12)0.0904 (12)−0.0340 (9)−0.0057 (9)−0.0215 (9)
O30.0899 (12)0.0609 (9)0.0800 (11)−0.0170 (9)−0.0390 (9)0.0097 (8)
Se10.04506 (12)0.07248 (16)0.06460 (15)−0.01676 (10)0.00230 (9)−0.01524 (10)
C1—C21.374 (3)C12—H120.9300
C1—C61.387 (2)C13—O31.366 (2)
C1—H10.9300C13—C141.378 (3)
C2—C31.370 (3)C14—C151.375 (3)
C2—H20.9300C14—H140.9300
C3—C41.378 (3)C15—H150.9300
C3—H30.9300C16—N31.505 (2)
C4—C51.379 (3)C16—C171.517 (3)
C4—H40.9300C16—H160.9800
C5—C61.393 (2)C17—C181.521 (3)
C5—H50.9300C17—H17A0.9700
C6—C71.473 (2)C17—H17B0.9700
C7—C81.367 (2)C18—H18A0.9600
C7—N21.388 (2)C18—H18B0.9600
C8—C91.512 (2)C18—H18C0.9600
C8—Se11.8438 (17)C19—O31.407 (3)
C9—C101.515 (2)C19—H19A0.9600
C9—C161.538 (2)C19—H19B0.9600
C9—H90.9800C19—H19C0.9600
C10—C111.377 (2)N1—N21.255 (2)
C10—C151.394 (2)N1—Se11.8792 (18)
C11—C121.388 (3)N3—O21.210 (2)
C11—H110.9300N3—O11.215 (2)
C12—C131.374 (3)
C2—C1—C6120.59 (18)O3—C13—C14115.45 (18)
C2—C1—H1119.7C12—C13—C14119.47 (18)
C6—C1—H1119.7C15—C14—C13120.66 (18)
C3—C2—C1120.67 (19)C15—C14—H14119.7
C3—C2—H2119.7C13—C14—H14119.7
C1—C2—H2119.7C14—C15—C10120.88 (18)
C2—C3—C4119.7 (2)C14—C15—H15119.6
C2—C3—H3120.2C10—C15—H15119.6
C4—C3—H3120.2N3—C16—C17108.37 (15)
C3—C4—C5120.12 (19)N3—C16—C9107.81 (14)
C3—C4—H4119.9C17—C16—C9112.92 (15)
C5—C4—H4119.9N3—C16—H16109.2
C4—C5—C6120.54 (18)C17—C16—H16109.2
C4—C5—H5119.7C9—C16—H16109.2
C6—C5—H5119.7C16—C17—C18114.67 (19)
C1—C6—C5118.39 (17)C16—C17—H17A108.6
C1—C6—C7119.66 (16)C18—C17—H17A108.6
C5—C6—C7121.95 (15)C16—C17—H17B108.6
C8—C7—N2115.27 (16)C18—C17—H17B108.6
C8—C7—C6127.29 (16)H17A—C17—H17B107.6
N2—C7—C6117.37 (15)C17—C18—H18A109.5
C7—C8—C9126.18 (15)C17—C18—H18B109.5
C7—C8—Se1109.09 (13)H18A—C18—H18B109.5
C9—C8—Se1124.37 (12)C17—C18—H18C109.5
C8—C9—C10110.23 (13)H18A—C18—H18C109.5
C8—C9—C16110.96 (14)H18B—C18—H18C109.5
C10—C9—C16115.08 (14)O3—C19—H19A109.5
C8—C9—H9106.7O3—C19—H19B109.5
C10—C9—H9106.7H19A—C19—H19B109.5
C16—C9—H9106.7O3—C19—H19C109.5
C11—C10—C15117.54 (17)H19A—C19—H19C109.5
C11—C10—C9119.27 (15)H19B—C19—H19C109.5
C15—C10—C9123.16 (16)N2—N1—Se1111.05 (12)
C10—C11—C12121.92 (17)N1—N2—C7117.76 (16)
C10—C11—H11119.0O2—N3—O1124.24 (19)
C12—C11—H11119.0O2—N3—C16117.87 (17)
C13—C12—C11119.51 (18)O1—N3—C16117.89 (17)
C13—C12—H12120.2C13—O3—C19118.6 (2)
C11—C12—H12120.2C8—Se1—N186.83 (7)
O3—C13—C12125.1 (2)
C6—C1—C2—C30.5 (4)C10—C11—C12—C13−0.7 (3)
C1—C2—C3—C4−1.7 (4)C11—C12—C13—O3−179.72 (18)
C2—C3—C4—C51.4 (4)C11—C12—C13—C14−0.7 (3)
C3—C4—C5—C60.1 (3)O3—C13—C14—C15−179.59 (17)
C2—C1—C6—C50.9 (3)C12—C13—C14—C151.3 (3)
C2—C1—C6—C7−179.2 (2)C13—C14—C15—C10−0.5 (3)
C4—C5—C6—C1−1.2 (3)C11—C10—C15—C14−0.9 (3)
C4—C5—C6—C7178.94 (19)C9—C10—C15—C14176.95 (16)
C1—C6—C7—C8128.2 (2)C8—C9—C16—N3174.57 (14)
C5—C6—C7—C8−52.0 (3)C10—C9—C16—N348.55 (19)
C1—C6—C7—N2−48.7 (2)C8—C9—C16—C17−65.7 (2)
C5—C6—C7—N2131.17 (18)C10—C9—C16—C17168.24 (16)
N2—C7—C8—C9173.33 (15)N3—C16—C17—C18−56.6 (3)
C6—C7—C8—C9−3.6 (3)C9—C16—C17—C18−176.0 (2)
N2—C7—C8—Se10.06 (19)Se1—N1—N2—C7−0.5 (2)
C6—C7—C8—Se1−176.86 (14)C8—C7—N2—N10.3 (2)
C7—C8—C9—C10−95.23 (19)C6—C7—N2—N1177.56 (16)
Se1—C8—C9—C1077.06 (17)C17—C16—N3—O2−68.0 (2)
C7—C8—C9—C16136.09 (17)C9—C16—N3—O254.5 (2)
Se1—C8—C9—C16−51.62 (19)C17—C16—N3—O1112.0 (2)
C8—C9—C10—C11103.29 (18)C9—C16—N3—O1−125.52 (18)
C16—C9—C10—C11−130.31 (17)C12—C13—O3—C19−5.6 (3)
C8—C9—C10—C15−74.5 (2)C14—C13—O3—C19175.42 (18)
C16—C9—C10—C1551.9 (2)C7—C8—Se1—N1−0.26 (13)
C15—C10—C11—C121.5 (3)C9—C8—Se1—N1−173.68 (15)
C9—C10—C11—C12−176.43 (17)N2—N1—Se1—C80.44 (14)
  4 in total

1.  Synthesis and biological activity of some azoles and azines.

Authors:  S el-Bahaie; M G Assy; M M Hassanien
Journal:  Pharmazie       Date:  1990-10       Impact factor: 1.267

Review 2.  Biosynthesis and function of selenocysteine-containing enzymes.

Authors:  T C Stadtman
Journal:  J Biol Chem       Date:  1991-09-05       Impact factor: 5.157

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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