Literature DB >> 22719545

Dihydro-cryptopine.

Wenwen Sun1, Lei Cao, Cen Zhang, Lifei Zhu, Le Zhou.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 6,7-dimeth-oxy-12-methyl-16,18-dioxa-12-aza-tetra-cyclo-[12.7.0.0(4,9).0(15,19)]henicosa-1(21),4,6,8,14,19-hexaen-3-ol], C(21)H(25)NO(5), the benzene rings exhibits a dihedral angle of 14.95 (4)°. In the crystal, mol-ecules are linked by pairs of O-H⋯O hydrogen bonding into inversion dimers. These dimers are further connected by C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22719545      PMCID: PMC3379347          DOI: 10.1107/S1600536812017588

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Wada et al. (2007 ▶). For the biological activity of cryptopine derivatives, see: Morteza et al. (2003 ▶); Yang et al. (2009 ▶); Capasso et al. (1997 ▶); Jeong et al. (2009 ▶).

Experimental

Crystal data

C21H25NO5 M = 371.42 Monoclinic, a = 9.5810 (16) Å b = 6.7405 (12) Å c = 28.886 (5) Å β = 92.164 (2)° V = 1864.2 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.26 × 0.21 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.976, T max = 0.983 13267 measured reflections 3460 independent reflections 2721 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.02 3460 reflections 248 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017588/nc2270sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017588/nc2270Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017588/nc2270Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NO5F(000) = 792
Mr = 371.42Dx = 1.323 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.5810 (16) ÅCell parameters from 4124 reflections
b = 6.7405 (12) Åθ = 2.5–26.5°
c = 28.886 (5) ŵ = 0.09 mm1
β = 92.164 (2)°T = 296 K
V = 1864.2 (6) Å3Block, colourless
Z = 40.26 × 0.21 × 0.18 mm
Bruker SMART APEXII CCD area-detector diffractometer3460 independent reflections
Radiation source: fine-focus sealed tube2721 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
phi and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.976, Tmax = 0.983k = −8→8
13267 measured reflectionsl = −34→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0533P)2 + 0.3327P] where P = (Fo2 + 2Fc2)/3
3460 reflections(Δ/σ)max < 0.001
248 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7221 (2)0.5338 (3)0.34220 (6)0.0678 (5)
H1A0.65760.62820.35500.081*
H1B0.80160.52030.36380.081*
C20.72327 (15)0.4630 (2)0.26692 (5)0.0479 (4)
C30.65789 (15)0.3100 (3)0.28885 (5)0.0487 (4)
C40.60582 (15)0.1506 (2)0.26509 (5)0.0487 (4)
H40.56410.04450.27980.058*
C50.61899 (14)0.1562 (2)0.21705 (5)0.0422 (3)
H50.58370.05030.19960.051*
C60.68174 (13)0.3111 (2)0.19394 (5)0.0377 (3)
C70.73928 (15)0.4729 (2)0.21985 (5)0.0431 (3)
C80.80651 (18)0.6541 (2)0.19944 (5)0.0548 (4)
H8A0.73370.74190.18730.066*
H8B0.85790.72440.22390.066*
C90.92335 (19)0.7795 (2)0.13244 (6)0.0612 (5)
H9A1.00440.75490.11410.073*
H9B0.94290.89540.15150.073*
C100.79804 (19)0.8230 (2)0.09997 (6)0.0576 (4)
H10A0.71650.83920.11850.069*
H10B0.81410.94850.08460.069*
C110.76530 (15)0.6684 (2)0.06336 (5)0.0446 (4)
C120.67469 (14)0.5083 (2)0.06902 (5)0.0410 (3)
C130.60773 (14)0.4639 (2)0.11475 (5)0.0411 (3)
H130.60670.58520.13340.049*
C140.68894 (14)0.3028 (2)0.14177 (4)0.0390 (3)
H14A0.65430.17440.13140.047*
H14B0.78630.31100.13380.047*
C151.03219 (19)0.5291 (4)0.18198 (7)0.0806 (6)
H15A1.09630.50890.15770.121*
H15B1.01450.40480.19690.121*
H15C1.07180.62080.20420.121*
C160.64789 (15)0.3799 (2)0.03173 (5)0.0435 (3)
H160.58740.27370.03540.052*
C170.70861 (15)0.4061 (2)−0.01042 (5)0.0450 (4)
C180.80076 (15)0.5652 (2)−0.01613 (5)0.0462 (4)
C190.82693 (16)0.6915 (2)0.02052 (5)0.0490 (4)
H190.88820.79670.01670.059*
C200.5989 (2)0.1198 (3)−0.04403 (6)0.0634 (5)
H20A0.64080.0319−0.02140.095*
H20B0.58880.0524−0.07320.095*
H20C0.50870.1606−0.03420.095*
C210.95733 (18)0.7328 (3)−0.06464 (6)0.0669 (5)
H21A0.91470.8601−0.06050.100*
H21B0.99290.7246−0.09520.100*
H21C1.03260.7159−0.04210.100*
N10.90152 (13)0.60922 (19)0.16244 (4)0.0504 (3)
O10.76747 (15)0.6038 (2)0.29889 (4)0.0766 (4)
O20.65523 (14)0.3471 (2)0.33582 (4)0.0720 (4)
O30.46774 (10)0.39104 (16)0.10842 (4)0.0531 (3)
H30.41650.48130.09920.080*
O40.68526 (12)0.28907 (18)−0.04891 (3)0.0598 (3)
O50.85638 (11)0.58148 (19)−0.05891 (4)0.0626 (3)
U11U22U33U12U13U23
C10.0611 (11)0.0995 (15)0.0425 (9)0.0074 (10)0.0007 (8)−0.0176 (9)
C20.0436 (8)0.0566 (9)0.0436 (8)0.0013 (7)0.0005 (6)−0.0111 (7)
C30.0411 (8)0.0690 (10)0.0361 (8)0.0084 (8)0.0029 (6)0.0023 (7)
C40.0416 (8)0.0584 (10)0.0463 (9)0.0007 (7)0.0048 (6)0.0102 (7)
C50.0381 (7)0.0437 (8)0.0448 (8)0.0007 (6)0.0017 (6)−0.0003 (6)
C60.0329 (7)0.0396 (8)0.0409 (7)0.0039 (6)0.0043 (6)−0.0019 (6)
C70.0400 (8)0.0468 (8)0.0430 (8)0.0008 (6)0.0057 (6)−0.0055 (6)
C80.0655 (10)0.0488 (9)0.0507 (9)−0.0124 (8)0.0105 (8)−0.0138 (7)
C90.0698 (11)0.0517 (10)0.0631 (11)−0.0270 (9)0.0159 (9)−0.0119 (8)
C100.0734 (11)0.0354 (8)0.0653 (10)−0.0082 (8)0.0201 (9)0.0018 (7)
C110.0473 (8)0.0383 (8)0.0488 (8)0.0014 (6)0.0082 (7)0.0079 (6)
C120.0406 (8)0.0402 (8)0.0425 (8)0.0027 (6)0.0071 (6)0.0061 (6)
C130.0421 (8)0.0388 (8)0.0431 (8)−0.0021 (6)0.0090 (6)0.0005 (6)
C140.0413 (8)0.0360 (7)0.0403 (8)−0.0014 (6)0.0076 (6)−0.0042 (6)
C150.0506 (11)0.1104 (17)0.0806 (14)−0.0113 (11)−0.0011 (9)0.0008 (12)
C160.0426 (8)0.0462 (8)0.0420 (8)−0.0050 (6)0.0053 (6)0.0063 (6)
C170.0411 (8)0.0558 (9)0.0381 (8)0.0007 (7)0.0018 (6)0.0054 (7)
C180.0405 (8)0.0589 (10)0.0396 (8)−0.0001 (7)0.0062 (6)0.0131 (7)
C190.0458 (8)0.0465 (9)0.0553 (9)−0.0043 (7)0.0082 (7)0.0147 (7)
C200.0755 (12)0.0650 (11)0.0500 (10)−0.0126 (9)0.0076 (8)−0.0057 (8)
C210.0538 (10)0.0878 (13)0.0600 (10)−0.0096 (9)0.0150 (8)0.0255 (10)
N10.0459 (7)0.0517 (8)0.0541 (8)−0.0122 (6)0.0078 (6)−0.0070 (6)
O10.0940 (10)0.0879 (9)0.0483 (7)−0.0248 (8)0.0078 (6)−0.0235 (6)
O20.0812 (9)0.0981 (10)0.0369 (6)−0.0062 (8)0.0049 (6)−0.0039 (6)
O30.0399 (6)0.0642 (7)0.0555 (7)−0.0020 (5)0.0074 (5)0.0149 (5)
O40.0663 (7)0.0753 (8)0.0382 (6)−0.0172 (6)0.0086 (5)−0.0013 (5)
O50.0566 (7)0.0870 (9)0.0451 (6)−0.0144 (6)0.0139 (5)0.0140 (6)
C1—O11.420 (2)C12—C161.398 (2)
C1—O21.422 (2)C12—C131.5200 (19)
C1—H1A0.9700C13—O31.4335 (17)
C1—H1B0.9700C13—C141.5322 (19)
C2—C31.374 (2)C13—H130.9800
C2—C71.376 (2)C14—H14A0.9700
C2—O11.3793 (18)C14—H14B0.9700
C3—C41.360 (2)C15—N11.457 (2)
C3—O21.3807 (17)C15—H15A0.9600
C4—C51.399 (2)C15—H15B0.9600
C4—H40.9300C15—H15C0.9600
C5—C61.388 (2)C16—C171.3805 (19)
C5—H50.9300C16—H160.9300
C6—C71.422 (2)C17—O41.3745 (18)
C6—C141.5122 (18)C17—C181.403 (2)
C7—C81.511 (2)C18—O51.3685 (17)
C8—N11.4617 (19)C18—C191.374 (2)
C8—H8A0.9700C19—H190.9300
C8—H8B0.9700C20—O41.420 (2)
C9—N11.458 (2)C20—H20A0.9600
C9—C101.524 (3)C20—H20B0.9600
C9—H9A0.9700C20—H20C0.9600
C9—H9B0.9700C21—O51.419 (2)
C10—C111.509 (2)C21—H21A0.9600
C10—H10A0.9700C21—H21B0.9600
C10—H10B0.9700C21—H21C0.9600
C11—C191.400 (2)O3—H30.8200
C11—C121.398 (2)
O1—C1—O2109.34 (13)O3—C13—C14106.08 (11)
O1—C1—H1A109.8C12—C13—C14111.07 (11)
O2—C1—H1A109.8O3—C13—H13109.1
O1—C1—H1B109.8C12—C13—H13109.1
O2—C1—H1B109.8C14—C13—H13109.1
H1A—C1—H1B108.3C6—C14—C13116.11 (11)
C3—C2—C7124.18 (14)C6—C14—H14A108.3
C3—C2—O1109.97 (13)C13—C14—H14A108.3
C7—C2—O1125.84 (15)C6—C14—H14B108.3
C4—C3—C2121.71 (14)C13—C14—H14B108.3
C4—C3—O2128.23 (15)H14A—C14—H14B107.4
C2—C3—O2110.07 (14)N1—C15—H15A109.5
C3—C4—C5115.72 (14)N1—C15—H15B109.5
C3—C4—H4122.1H15A—C15—H15B109.5
C5—C4—H4122.1N1—C15—H15C109.5
C6—C5—C4123.69 (14)H15A—C15—H15C109.5
C6—C5—H5118.2H15B—C15—H15C109.5
C4—C5—H5118.2C17—C16—C12121.96 (14)
C5—C6—C7119.32 (13)C17—C16—H16119.0
C5—C6—C14119.24 (12)C12—C16—H16119.0
C7—C6—C14121.44 (12)O4—C17—C16125.38 (14)
C2—C7—C6115.33 (13)O4—C17—C18115.30 (12)
C2—C7—C8119.32 (13)C16—C17—C18119.31 (14)
C6—C7—C8125.25 (13)O5—C18—C19125.45 (14)
N1—C8—C7113.84 (12)O5—C18—C17115.85 (14)
N1—C8—H8A108.8C19—C18—C17118.70 (13)
C7—C8—H8A108.8C18—C19—C11122.79 (14)
N1—C8—H8B108.8C18—C19—H19118.6
C7—C8—H8B108.8C11—C19—H19118.6
H8A—C8—H8B107.7O4—C20—H20A109.5
N1—C9—C10112.95 (13)O4—C20—H20B109.5
N1—C9—H9A109.0H20A—C20—H20B109.5
C10—C9—H9A109.0O4—C20—H20C109.5
N1—C9—H9B109.0H20A—C20—H20C109.5
C10—C9—H9B109.0H20B—C20—H20C109.5
H9A—C9—H9B107.8O5—C21—H21A109.5
C11—C10—C9115.88 (14)O5—C21—H21B109.5
C11—C10—H10A108.3H21A—C21—H21B109.5
C9—C10—H10A108.3O5—C21—H21C109.5
C11—C10—H10B108.3H21A—C21—H21C109.5
C9—C10—H10B108.3H21B—C21—H21C109.5
H10A—C10—H10B107.4C9—N1—C15112.43 (14)
C19—C11—C12118.27 (14)C9—N1—C8112.27 (13)
C19—C11—C10117.35 (13)C15—N1—C8110.06 (14)
C12—C11—C10124.35 (13)C2—O1—C1105.37 (14)
C16—C12—C11118.97 (13)C3—O2—C1105.22 (13)
C16—C12—C13118.44 (12)C13—O3—H3109.5
C11—C12—C13122.55 (13)C17—O4—C20117.30 (12)
O3—C13—C12112.35 (11)C18—O5—C21116.96 (13)
C7—C2—C3—C41.7 (2)C5—C6—C14—C13115.88 (14)
O1—C2—C3—C4−179.25 (14)C7—C6—C14—C13−64.86 (17)
C7—C2—C3—O2−178.17 (14)O3—C13—C14—C6−86.03 (14)
O1—C2—C3—O20.91 (18)C12—C13—C14—C6151.62 (12)
C2—C3—C4—C5−2.1 (2)C11—C12—C16—C170.2 (2)
O2—C3—C4—C5177.69 (14)C13—C12—C16—C17−177.67 (13)
C3—C4—C5—C60.6 (2)C12—C16—C17—O4−178.53 (13)
C4—C5—C6—C71.4 (2)C12—C16—C17—C180.4 (2)
C4—C5—C6—C14−179.36 (13)O4—C17—C18—O5−0.76 (19)
C3—C2—C7—C60.4 (2)C16—C17—C18—O5−179.84 (13)
O1—C2—C7—C6−178.53 (14)O4—C17—C18—C19178.58 (13)
C3—C2—C7—C8176.81 (15)C16—C17—C18—C19−0.5 (2)
O1—C2—C7—C8−2.1 (2)O5—C18—C19—C11179.15 (14)
C5—C6—C7—C2−1.82 (19)C17—C18—C19—C11−0.1 (2)
C14—C6—C7—C2178.92 (13)C12—C11—C19—C180.8 (2)
C5—C6—C7—C8−177.99 (14)C10—C11—C19—C18−177.30 (15)
C14—C6—C7—C82.8 (2)C10—C9—N1—C15161.30 (15)
C2—C7—C8—N1139.97 (14)C10—C9—N1—C8−73.96 (17)
C6—C7—C8—N1−44.0 (2)C7—C8—N1—C9158.57 (14)
N1—C9—C10—C11−66.69 (18)C7—C8—N1—C15−75.39 (18)
C9—C10—C11—C19−91.15 (17)C3—C2—O1—C1−1.83 (18)
C9—C10—C11—C1290.89 (19)C7—C2—O1—C1177.23 (16)
C19—C11—C12—C16−0.8 (2)O2—C1—O1—C22.09 (18)
C10—C11—C12—C16177.11 (14)C4—C3—O2—C1−179.40 (16)
C19—C11—C12—C13176.99 (13)C2—C3—O2—C10.42 (17)
C10—C11—C12—C13−5.1 (2)O1—C1—O2—C3−1.56 (18)
C16—C12—C13—O3−38.64 (17)C16—C17—O4—C20−4.4 (2)
C11—C12—C13—O3143.52 (14)C18—C17—O4—C20176.55 (14)
C16—C12—C13—C1479.99 (16)C19—C18—O5—C215.0 (2)
C11—C12—C13—C14−97.85 (15)C17—C18—O5—C21−175.74 (14)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.822.313.0924 (16)159
C1—H1A···O3ii0.972.413.367 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.822.313.0924 (16)159
C1—H1A⋯O3ii0.972.413.367 (2)170

Symmetry codes: (i) ; (ii) .

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