Literature DB >> 22719531

2,3-Dihydro-pyrrolo-[2,1-b]quinazoline-9(1H)-thione.

Azizbek O Nasrullayev1, Burkhon Zh Elmuradov, Kambarali K Turgunov, Bakhodir Tashkhodjaev, Khusnutdin M Shakhidoyatov.   

Abstract

In the crystal, mol-ecules of the title compound, C(11)H(10)N(2)S, are connected by C-H⋯N inter-actions around threefold axes. Furthermore, they form stacks along the c axis showing π-π inter-actions between pyrimidine rings [centroid-centroid distance = 3.721 (1) Å]. The central ring is essentially planar with an r.m.s. deviation of 0.007 Å. The five-membered ring adopts an envelope conformation with the flap atom deviating by 0.241 (4) Å from the mean plane (r.m.s. deviation = 0.002 Å) through the other four ring atoms.

Entities:  

Year:  2012        PMID: 22719531      PMCID: PMC3379333          DOI: 10.1107/S1600536812021228

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2,3-dihydro-1H,9H-pyrrolo­[2,1-b]quinazolin-9-one and the title compound, see: Abduraza­kov et al. (2007 ▶); Shakhidoyatov & Kadyrov (1977 ▶); Elmuradov et al. (2010 ▶). For related structures, see Elmuradov et al. (2010 ▶); Turgunov et al. (1995 ▶).

Experimental

Crystal data

C11H10N2S M = 202.27 Trigonal, a = 26.206 (1) Å c = 7.441 (2) Å V = 4425.5 (12) Å3 Z = 18 Cu Kα radiation μ = 2.57 mm−1 T = 295 K 0.65 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Ruby diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.601, T max = 1.000 5753 measured reflections 1379 independent reflections 1305 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.078 S = 1.06 1379 reflections 128 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 501 Friedel pairs Flack parameter: −0.003 (19) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Bruker, 1998 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812021228/bt5913sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021228/bt5913Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021228/bt5913Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2SDx = 1.366 Mg m3
Mr = 202.27Melting point: 411 K
Trigonal, R3cCu Kα radiation, λ = 1.54184 Å
Hall symbol: R 3 -2"cCell parameters from 2338 reflections
a = 26.206 (1) Åθ = 3.4–66.8°
c = 7.441 (2) ŵ = 2.57 mm1
V = 4425.5 (12) Å3T = 295 K
Z = 18Prism, yellow
F(000) = 19080.65 × 0.25 × 0.20 mm
Oxford Diffraction Xcalibur Ruby diffractometer1379 independent reflections
Radiation source: Enhance (Cu) X-ray Source1305 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
Detector resolution: 10.2576 pixels mm-1θmax = 66.8°, θmin = 3.4°
ω scansh = −28→31
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −31→31
Tmin = 0.601, Tmax = 1.000l = −8→8
5753 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0613P)2 + 0.028P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.078(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.16 e Å3
1379 reflectionsΔρmin = −0.19 e Å3
128 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.00144 (11)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 501 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.003 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.89225 (2)0.23959 (3)0.13284 (10)0.0588 (2)
N10.71400 (8)0.21624 (8)0.2807 (3)0.0562 (5)
C20.72288 (9)0.17396 (9)0.2343 (3)0.0480 (4)
N30.77699 (7)0.18140 (7)0.1857 (2)0.0445 (4)
C40.82758 (8)0.23443 (9)0.1852 (3)0.0451 (4)
C4A0.81976 (9)0.28375 (9)0.2345 (3)0.0477 (4)
C50.86723 (10)0.34181 (10)0.2392 (4)0.0614 (5)
H5A0.90500.34950.21050.074*
C60.85814 (13)0.38726 (11)0.2857 (5)0.0765 (8)
H6A0.88980.42560.28800.092*
C70.80209 (14)0.37644 (12)0.3296 (5)0.0827 (9)
H7A0.79640.40760.36040.099*
C80.75527 (11)0.32025 (12)0.3276 (5)0.0746 (7)
H8A0.71800.31350.35810.090*
C8A0.76270 (10)0.27240 (9)0.2803 (3)0.0528 (5)
C90.67738 (10)0.11011 (10)0.2275 (4)0.0601 (5)
H9A0.64360.10400.15700.072*
H9B0.66420.09470.34750.072*
C100.70825 (10)0.08040 (10)0.1391 (4)0.0670 (6)
H10A0.69990.04500.20440.080*
H10B0.69490.06970.01610.080*
C110.77385 (10)0.12481 (9)0.1437 (4)0.0548 (5)
H11A0.79340.11460.23560.066*
H11B0.79200.12670.02830.066*
U11U22U33U12U13U23
S10.0415 (3)0.0673 (4)0.0720 (3)0.0306 (2)0.0040 (2)−0.0012 (3)
N10.0407 (8)0.0548 (10)0.0767 (12)0.0265 (8)−0.0002 (8)0.0031 (9)
C20.0375 (9)0.0509 (10)0.0541 (10)0.0210 (8)−0.0041 (8)0.0011 (9)
N30.0422 (8)0.0457 (9)0.0480 (8)0.0238 (7)−0.0023 (6)0.0014 (7)
C40.0420 (9)0.0512 (11)0.0442 (9)0.0250 (9)−0.0033 (8)0.0018 (8)
C4A0.0444 (10)0.0472 (10)0.0541 (10)0.0249 (8)−0.0033 (8)0.0033 (9)
C50.0499 (11)0.0504 (11)0.0791 (14)0.0215 (9)−0.0041 (11)0.0013 (11)
C60.0686 (15)0.0437 (12)0.110 (2)0.0229 (12)−0.0094 (14)−0.0012 (13)
C70.0838 (17)0.0545 (13)0.124 (3)0.0454 (13)−0.0099 (18)−0.0084 (15)
C80.0615 (14)0.0649 (14)0.112 (2)0.0429 (12)−0.0006 (15)−0.0018 (15)
C8A0.0485 (11)0.0482 (11)0.0667 (12)0.0279 (9)−0.0062 (10)0.0009 (9)
C90.0429 (10)0.0519 (11)0.0752 (13)0.0160 (9)−0.0014 (10)−0.0002 (11)
C100.0616 (14)0.0464 (11)0.0850 (16)0.0211 (10)−0.0043 (13)−0.0053 (11)
C110.0601 (12)0.0512 (11)0.0592 (11)0.0325 (10)−0.0004 (11)−0.0029 (12)
S1—C41.6771 (18)C6—H6A0.9300
N1—C21.288 (3)C7—C81.366 (4)
N1—C8A1.384 (3)C7—H7A0.9300
C2—N31.380 (3)C8—C8A1.406 (3)
C2—C91.493 (3)C8—H8A0.9300
N3—C41.359 (3)C9—C101.524 (3)
N3—C111.477 (3)C9—H9A0.9700
C4—C4A1.453 (3)C9—H9B0.9700
C4A—C51.404 (3)C10—C111.520 (3)
C4A—C8A1.413 (3)C10—H10A0.9700
C5—C61.371 (4)C10—H10B0.9700
C5—H5A0.9300C11—H11A0.9700
C6—C71.388 (4)C11—H11B0.9700
C2—N1—C8A116.55 (17)C7—C8—H8A119.6
N1—C2—N3124.32 (18)C8A—C8—H8A119.6
N1—C2—C9125.92 (19)N1—C8A—C8118.8 (2)
N3—C2—C9109.75 (18)N1—C8A—C4A122.71 (18)
C4—N3—C2123.61 (16)C8—C8A—C4A118.5 (2)
C4—N3—C11124.21 (16)C2—C9—C10104.87 (19)
C2—N3—C11112.11 (16)C2—C9—H9A110.8
N3—C4—C4A114.17 (16)C10—C9—H9A110.8
N3—C4—S1120.86 (15)C2—C9—H9B110.8
C4A—C4—S1124.97 (16)C10—C9—H9B110.8
C5—C4A—C8A119.56 (19)H9A—C9—H9B108.8
C5—C4A—C4121.83 (19)C11—C10—C9106.58 (18)
C8A—C4A—C4118.61 (18)C11—C10—H10A110.4
C6—C5—C4A120.2 (2)C9—C10—H10A110.4
C6—C5—H5A119.9C11—C10—H10B110.4
C4A—C5—H5A119.9C9—C10—H10B110.4
C5—C6—C7120.5 (2)H10A—C10—H10B108.6
C5—C6—H6A119.7N3—C11—C10104.32 (18)
C7—C6—H6A119.7N3—C11—H11A110.9
C8—C7—C6120.4 (2)C10—C11—H11A110.9
C8—C7—H7A119.8N3—C11—H11B110.9
C6—C7—H7A119.8C10—C11—H11B110.9
C7—C8—C8A120.9 (2)H11A—C11—H11B108.9
D—H···AD—HH···AD···AD—H···A
C7—H7A···N1i0.932.613.464 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯N1i0.932.613.464 (4)153

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-3-Propoxymethyl-idene-2,3-dihydro-1H-pyrrolo[2,1-b]quinazolin-9-one monohydrate.

Authors:  Burkhon Zh Elmuradov; Kambarali Turgunov; Bakhodir Tashkhodjaev; Khusniddin M Shakhidoyatov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-30
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