| Literature DB >> 22719531 |
Azizbek O Nasrullayev1, Burkhon Zh Elmuradov, Kambarali K Turgunov, Bakhodir Tashkhodjaev, Khusnutdin M Shakhidoyatov.
Abstract
In the crystal, mol-ecules of the title compound, C(11)H(10)N(2)S, are connected by C-H⋯N inter-actions around threefold axes. Furthermore, they form stacks along the c axis showing π-π inter-actions between pyrimidine rings [centroid-centroid distance = 3.721 (1) Å]. The central ring is essentially planar with an r.m.s. deviation of 0.007 Å. The five-membered ring adopts an envelope conformation with the flap atom deviating by 0.241 (4) Å from the mean plane (r.m.s. deviation = 0.002 Å) through the other four ring atoms.Entities:
Year: 2012 PMID: 22719531 PMCID: PMC3379333 DOI: 10.1107/S1600536812021228
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H10N2S | |
| Melting point: 411 K | |
| Trigonal, | Cu |
| Hall symbol: R 3 -2"c | Cell parameters from 2338 reflections |
| θ = 3.4–66.8° | |
| µ = 2.57 mm−1 | |
| Prism, yellow | |
| 0.65 × 0.25 × 0.20 mm |
| Oxford Diffraction Xcalibur Ruby diffractometer | 1379 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 1305 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.2576 pixels mm-1 | θmax = 66.8°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5753 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.16 e Å−3 | |
| 1379 reflections | Δρmin = −0.19 e Å−3 |
| 128 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.00144 (11) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 501 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.003 (19) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.89225 (2) | 0.23959 (3) | 0.13284 (10) | 0.0588 (2) | |
| N1 | 0.71400 (8) | 0.21624 (8) | 0.2807 (3) | 0.0562 (5) | |
| C2 | 0.72288 (9) | 0.17396 (9) | 0.2343 (3) | 0.0480 (4) | |
| N3 | 0.77699 (7) | 0.18140 (7) | 0.1857 (2) | 0.0445 (4) | |
| C4 | 0.82758 (8) | 0.23443 (9) | 0.1852 (3) | 0.0451 (4) | |
| C4A | 0.81976 (9) | 0.28375 (9) | 0.2345 (3) | 0.0477 (4) | |
| C5 | 0.86723 (10) | 0.34181 (10) | 0.2392 (4) | 0.0614 (5) | |
| H5A | 0.9050 | 0.3495 | 0.2105 | 0.074* | |
| C6 | 0.85814 (13) | 0.38726 (11) | 0.2857 (5) | 0.0765 (8) | |
| H6A | 0.8898 | 0.4256 | 0.2880 | 0.092* | |
| C7 | 0.80209 (14) | 0.37644 (12) | 0.3296 (5) | 0.0827 (9) | |
| H7A | 0.7964 | 0.4076 | 0.3604 | 0.099* | |
| C8 | 0.75527 (11) | 0.32025 (12) | 0.3276 (5) | 0.0746 (7) | |
| H8A | 0.7180 | 0.3135 | 0.3581 | 0.090* | |
| C8A | 0.76270 (10) | 0.27240 (9) | 0.2803 (3) | 0.0528 (5) | |
| C9 | 0.67738 (10) | 0.11011 (10) | 0.2275 (4) | 0.0601 (5) | |
| H9A | 0.6436 | 0.1040 | 0.1570 | 0.072* | |
| H9B | 0.6642 | 0.0947 | 0.3475 | 0.072* | |
| C10 | 0.70825 (10) | 0.08040 (10) | 0.1391 (4) | 0.0670 (6) | |
| H10A | 0.6999 | 0.0450 | 0.2044 | 0.080* | |
| H10B | 0.6949 | 0.0697 | 0.0161 | 0.080* | |
| C11 | 0.77385 (10) | 0.12481 (9) | 0.1437 (4) | 0.0548 (5) | |
| H11A | 0.7934 | 0.1146 | 0.2356 | 0.066* | |
| H11B | 0.7920 | 0.1267 | 0.0283 | 0.066* |
| S1 | 0.0415 (3) | 0.0673 (4) | 0.0720 (3) | 0.0306 (2) | 0.0040 (2) | −0.0012 (3) |
| N1 | 0.0407 (8) | 0.0548 (10) | 0.0767 (12) | 0.0265 (8) | −0.0002 (8) | 0.0031 (9) |
| C2 | 0.0375 (9) | 0.0509 (10) | 0.0541 (10) | 0.0210 (8) | −0.0041 (8) | 0.0011 (9) |
| N3 | 0.0422 (8) | 0.0457 (9) | 0.0480 (8) | 0.0238 (7) | −0.0023 (6) | 0.0014 (7) |
| C4 | 0.0420 (9) | 0.0512 (11) | 0.0442 (9) | 0.0250 (9) | −0.0033 (8) | 0.0018 (8) |
| C4A | 0.0444 (10) | 0.0472 (10) | 0.0541 (10) | 0.0249 (8) | −0.0033 (8) | 0.0033 (9) |
| C5 | 0.0499 (11) | 0.0504 (11) | 0.0791 (14) | 0.0215 (9) | −0.0041 (11) | 0.0013 (11) |
| C6 | 0.0686 (15) | 0.0437 (12) | 0.110 (2) | 0.0229 (12) | −0.0094 (14) | −0.0012 (13) |
| C7 | 0.0838 (17) | 0.0545 (13) | 0.124 (3) | 0.0454 (13) | −0.0099 (18) | −0.0084 (15) |
| C8 | 0.0615 (14) | 0.0649 (14) | 0.112 (2) | 0.0429 (12) | −0.0006 (15) | −0.0018 (15) |
| C8A | 0.0485 (11) | 0.0482 (11) | 0.0667 (12) | 0.0279 (9) | −0.0062 (10) | 0.0009 (9) |
| C9 | 0.0429 (10) | 0.0519 (11) | 0.0752 (13) | 0.0160 (9) | −0.0014 (10) | −0.0002 (11) |
| C10 | 0.0616 (14) | 0.0464 (11) | 0.0850 (16) | 0.0211 (10) | −0.0043 (13) | −0.0053 (11) |
| C11 | 0.0601 (12) | 0.0512 (11) | 0.0592 (11) | 0.0325 (10) | −0.0004 (11) | −0.0029 (12) |
| S1—C4 | 1.6771 (18) | C6—H6A | 0.9300 |
| N1—C2 | 1.288 (3) | C7—C8 | 1.366 (4) |
| N1—C8A | 1.384 (3) | C7—H7A | 0.9300 |
| C2—N3 | 1.380 (3) | C8—C8A | 1.406 (3) |
| C2—C9 | 1.493 (3) | C8—H8A | 0.9300 |
| N3—C4 | 1.359 (3) | C9—C10 | 1.524 (3) |
| N3—C11 | 1.477 (3) | C9—H9A | 0.9700 |
| C4—C4A | 1.453 (3) | C9—H9B | 0.9700 |
| C4A—C5 | 1.404 (3) | C10—C11 | 1.520 (3) |
| C4A—C8A | 1.413 (3) | C10—H10A | 0.9700 |
| C5—C6 | 1.371 (4) | C10—H10B | 0.9700 |
| C5—H5A | 0.9300 | C11—H11A | 0.9700 |
| C6—C7 | 1.388 (4) | C11—H11B | 0.9700 |
| C2—N1—C8A | 116.55 (17) | C7—C8—H8A | 119.6 |
| N1—C2—N3 | 124.32 (18) | C8A—C8—H8A | 119.6 |
| N1—C2—C9 | 125.92 (19) | N1—C8A—C8 | 118.8 (2) |
| N3—C2—C9 | 109.75 (18) | N1—C8A—C4A | 122.71 (18) |
| C4—N3—C2 | 123.61 (16) | C8—C8A—C4A | 118.5 (2) |
| C4—N3—C11 | 124.21 (16) | C2—C9—C10 | 104.87 (19) |
| C2—N3—C11 | 112.11 (16) | C2—C9—H9A | 110.8 |
| N3—C4—C4A | 114.17 (16) | C10—C9—H9A | 110.8 |
| N3—C4—S1 | 120.86 (15) | C2—C9—H9B | 110.8 |
| C4A—C4—S1 | 124.97 (16) | C10—C9—H9B | 110.8 |
| C5—C4A—C8A | 119.56 (19) | H9A—C9—H9B | 108.8 |
| C5—C4A—C4 | 121.83 (19) | C11—C10—C9 | 106.58 (18) |
| C8A—C4A—C4 | 118.61 (18) | C11—C10—H10A | 110.4 |
| C6—C5—C4A | 120.2 (2) | C9—C10—H10A | 110.4 |
| C6—C5—H5A | 119.9 | C11—C10—H10B | 110.4 |
| C4A—C5—H5A | 119.9 | C9—C10—H10B | 110.4 |
| C5—C6—C7 | 120.5 (2) | H10A—C10—H10B | 108.6 |
| C5—C6—H6A | 119.7 | N3—C11—C10 | 104.32 (18) |
| C7—C6—H6A | 119.7 | N3—C11—H11A | 110.9 |
| C8—C7—C6 | 120.4 (2) | C10—C11—H11A | 110.9 |
| C8—C7—H7A | 119.8 | N3—C11—H11B | 110.9 |
| C6—C7—H7A | 119.8 | C10—C11—H11B | 110.9 |
| C7—C8—C8A | 120.9 (2) | H11A—C11—H11B | 108.9 |
| H··· | ||||
| C7—H7 | 0.93 | 2.61 | 3.464 (4) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C7—H7 | 0.93 | 2.61 | 3.464 (4) | 153 |
Symmetry code: (i) .