Literature DB >> 22719525

(E)-2-Cyano-N'-(1,2,3,4-tetra-hydro-naphthalen-1-yl-idene)acetohydrazide.

Mohamed A Al-Omar, Nagy M Khalifa, Hazem A Ghabbour, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

In the title compound, C(13)H(13)N(3)O, the tetra-hydro-benzene ring adopts a half-boat (envelope) conformation. The mean plane of the tetra-hydro-naphthalene ring system forms a dihedral angle of 9.56 (6)° with the mean plane of the cyano-acetohydrazide group. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds generate R(2) (2)(8) loops. The dimers are connected by C-H⋯N hydrogen bonds into a chain propagating along [101]. The crystal packing also features C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22719525      PMCID: PMC3379327          DOI: 10.1107/S160053681202106X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to tetra­lin, see: Dutta et al. (2002 ▶); Taddei et al. (2002 ▶); Zaghary et al. (2005 ▶); Bahgat & Khalifa (2006 ▶); El Nezhawy et al. (2009 ▶); Khalifa et al. (2008 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C13H13N3O M = 227.26 Triclinic, a = 7.6414 (1) Å b = 7.6748 (1) Å c = 10.5644 (2) Å α = 109.589 (1)° β = 91.405 (1)° γ = 93.260 (1)° V = 582.13 (2) Å3 Z = 2 Cu Kα radiation μ = 0.69 mm−1 T = 296 K 0.59 × 0.51 × 0.40 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.687, T max = 0.771 5749 measured reflections 1898 independent reflections 1762 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.120 S = 1.05 1898 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202106X/hb6781sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202106X/hb6781Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202106X/hb6781Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13N3OZ = 2
Mr = 227.26F(000) = 240
Triclinic, P1Dx = 1.297 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 7.6414 (1) ÅCell parameters from 2725 reflections
b = 7.6748 (1) Åθ = 5.8–70.2°
c = 10.5644 (2) ŵ = 0.69 mm1
α = 109.589 (1)°T = 296 K
β = 91.405 (1)°Block, colourless
γ = 93.260 (1)°0.59 × 0.51 × 0.40 mm
V = 582.13 (2) Å3
Bruker SMART APEXII CCD diffractometer1898 independent reflections
Radiation source: fine-focus sealed tube1762 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
φ and ω scansθmax = 65.0°, θmin = 5.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.687, Tmax = 0.771k = −7→9
5749 measured reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.120w = 1/[σ2(Fo2) + (0.0686P)2 + 0.0904P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1898 reflectionsΔρmax = 0.18 e Å3
159 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.19129 (16)0.4167 (2)0.53245 (10)0.0798 (4)
N10.07938 (15)0.36666 (18)0.32370 (11)0.0530 (3)
N20.10531 (14)0.29801 (15)0.18782 (10)0.0456 (3)
N30.5764 (3)0.2338 (4)0.5360 (2)0.1264 (9)
C1−0.02329 (16)0.29510 (17)0.10641 (13)0.0419 (3)
C2−0.20191 (18)0.3606 (2)0.14809 (15)0.0531 (4)
H2A−0.19540.49500.17880.064*
H2B−0.23570.32180.22300.064*
C3−0.34209 (18)0.2862 (2)0.03515 (16)0.0590 (4)
H3A−0.36650.15440.01680.071*
H3B−0.44940.34700.06320.071*
C4−0.28501 (19)0.3183 (2)−0.09133 (16)0.0583 (4)
H4A−0.27420.4504−0.07590.070*
H4B−0.37380.2621−0.16290.070*
C5−0.11171 (18)0.23730 (19)−0.13436 (14)0.0491 (4)
C60.01244 (16)0.22607 (16)−0.03809 (12)0.0416 (3)
C70.17256 (17)0.15242 (19)−0.08101 (14)0.0478 (3)
H7A0.25550.1441−0.01770.057*
C80.2098 (2)0.0923 (2)−0.21424 (15)0.0575 (4)
H8A0.31700.0438−0.24070.069*
C90.0876 (2)0.1038 (2)−0.30948 (15)0.0636 (4)
H9A0.11220.0629−0.40010.076*
C10−0.0706 (2)0.1761 (2)−0.26907 (15)0.0613 (4)
H10A−0.15200.1842−0.33340.074*
C110.20438 (19)0.3556 (2)0.41121 (14)0.0547 (4)
C120.3655 (2)0.2592 (2)0.35112 (15)0.0619 (4)
H12A0.33040.13610.28920.074*
H12B0.42510.32840.30110.074*
C130.4837 (2)0.2454 (3)0.45556 (17)0.0712 (5)
H1N1−0.010 (3)0.434 (3)0.3642 (19)0.078 (5)*
U11U22U33U12U13U23
O10.0795 (8)0.1259 (11)0.0388 (6)0.0515 (7)0.0104 (5)0.0263 (6)
N10.0473 (7)0.0739 (8)0.0390 (6)0.0203 (6)0.0055 (5)0.0178 (5)
N20.0432 (6)0.0558 (7)0.0378 (6)0.0092 (5)0.0022 (4)0.0148 (5)
N30.0968 (14)0.189 (2)0.0923 (14)0.0546 (15)−0.0274 (11)0.0414 (14)
C10.0377 (7)0.0438 (7)0.0456 (7)0.0036 (5)0.0000 (5)0.0167 (5)
C20.0420 (7)0.0643 (9)0.0538 (8)0.0104 (6)0.0054 (6)0.0195 (7)
C30.0374 (7)0.0665 (9)0.0744 (10)0.0053 (6)−0.0015 (6)0.0255 (8)
C40.0441 (8)0.0667 (9)0.0653 (9)0.0060 (6)−0.0122 (6)0.0245 (7)
C50.0452 (7)0.0495 (7)0.0512 (8)0.0002 (6)−0.0089 (6)0.0164 (6)
C60.0395 (7)0.0401 (6)0.0429 (7)0.0007 (5)−0.0037 (5)0.0117 (5)
C70.0438 (7)0.0517 (7)0.0450 (7)0.0076 (6)−0.0041 (5)0.0122 (6)
C80.0544 (8)0.0603 (9)0.0503 (8)0.0106 (7)0.0047 (6)0.0078 (7)
C90.0711 (10)0.0723 (10)0.0396 (7)0.0049 (8)−0.0002 (7)0.0089 (7)
C100.0632 (9)0.0711 (10)0.0466 (8)0.0019 (7)−0.0144 (7)0.0174 (7)
C110.0542 (8)0.0729 (9)0.0398 (7)0.0209 (7)0.0061 (6)0.0197 (6)
C120.0528 (8)0.0840 (11)0.0442 (8)0.0228 (7)0.0006 (6)0.0127 (7)
C130.0574 (9)0.0923 (12)0.0596 (9)0.0241 (8)−0.0055 (8)0.0175 (9)
O1—C111.2163 (17)C4—H4B0.9700
N1—C111.3389 (18)C5—C101.391 (2)
N1—N21.3770 (15)C5—C61.4009 (18)
N1—H1N10.90 (2)C6—C71.3986 (19)
N2—C11.2841 (16)C7—C81.369 (2)
N3—C131.122 (2)C7—H7A0.9300
C1—C61.4766 (18)C8—C91.383 (2)
C1—C21.5061 (18)C8—H8A0.9300
C2—C31.519 (2)C9—C101.376 (2)
C2—H2A0.9700C9—H9A0.9300
C2—H2B0.9700C10—H10A0.9300
C3—C41.508 (2)C11—C121.5140 (19)
C3—H3A0.9700C12—C131.444 (2)
C3—H3B0.9700C12—H12A0.9700
C4—C51.510 (2)C12—H12B0.9700
C4—H4A0.9700
C11—N1—N2119.64 (11)C6—C5—C4120.20 (13)
C11—N1—H1N1112.9 (12)C7—C6—C5118.82 (12)
N2—N1—H1N1127.0 (12)C7—C6—C1120.57 (11)
C1—N2—N1117.97 (11)C5—C6—C1120.59 (11)
N2—C1—C6116.02 (11)C8—C7—C6121.36 (12)
N2—C1—C2124.94 (12)C8—C7—H7A119.3
C6—C1—C2119.01 (11)C6—C7—H7A119.3
C1—C2—C3112.97 (12)C7—C8—C9119.94 (13)
C1—C2—H2A109.0C7—C8—H8A120.0
C3—C2—H2A109.0C9—C8—H8A120.0
C1—C2—H2B109.0C10—C9—C8119.50 (14)
C3—C2—H2B109.0C10—C9—H9A120.3
H2A—C2—H2B107.8C8—C9—H9A120.3
C4—C3—C2111.41 (12)C9—C10—C5121.62 (13)
C4—C3—H3A109.3C9—C10—H10A119.2
C2—C3—H3A109.3C5—C10—H10A119.2
C4—C3—H3B109.3O1—C11—N1122.97 (13)
C2—C3—H3B109.3O1—C11—C12120.79 (13)
H3A—C3—H3B108.0N1—C11—C12116.23 (12)
C3—C4—C5111.56 (12)C13—C12—C11110.54 (13)
C3—C4—H4A109.3C13—C12—H12A109.5
C5—C4—H4A109.3C11—C12—H12A109.5
C3—C4—H4B109.3C13—C12—H12B109.5
C5—C4—H4B109.3C11—C12—H12B109.5
H4A—C4—H4B108.0H12A—C12—H12B108.1
C10—C5—C6118.76 (13)N3—C13—C12179.4 (2)
C10—C5—C4121.04 (12)
C11—N1—N2—C1173.62 (13)C2—C1—C6—C7−175.60 (12)
N1—N2—C1—C6178.06 (11)N2—C1—C6—C5−172.51 (11)
N1—N2—C1—C2−0.3 (2)C2—C1—C6—C55.95 (18)
N2—C1—C2—C3−161.63 (13)C5—C6—C7—C80.2 (2)
C6—C1—C2—C320.06 (18)C1—C6—C7—C8−178.26 (12)
C1—C2—C3—C4−50.51 (17)C6—C7—C8—C90.0 (2)
C2—C3—C4—C555.23 (17)C7—C8—C9—C100.1 (2)
C3—C4—C5—C10151.26 (14)C8—C9—C10—C5−0.4 (3)
C3—C4—C5—C6−30.03 (18)C6—C5—C10—C90.6 (2)
C10—C5—C6—C7−0.5 (2)C4—C5—C10—C9179.32 (15)
C4—C5—C6—C7−179.24 (12)N2—N1—C11—O1178.53 (15)
C10—C5—C6—C1177.98 (12)N2—N1—C11—C12−2.2 (2)
C4—C5—C6—C1−0.76 (19)O1—C11—C12—C133.3 (2)
N2—C1—C6—C75.94 (18)N1—C11—C12—C13−175.97 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.91 (2)1.96 (2)2.8640 (17)174.7 (19)
C10—H10A···N3ii0.932.583.491 (3)167
C2—H2A···Cg1iii0.972.803.6775 (17)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1i0.91 (2)1.96 (2)2.8640 (17)174.7 (19)
C10—H10A⋯N3ii0.932.583.491 (3)167
C2—H2ACg1iii0.972.803.6775 (17)152

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A novel series of hybrid compounds derived by combining 2-aminotetralin and piperazine fragments: binding activity at D2 and D3 receptors.

Authors:  Aloke K Dutta; Xiang-Shu Fei; Maarten E A Reith
Journal:  Bioorg Med Chem Lett       Date:  2002-02-25       Impact factor: 2.823

3.  Vibrational study of polymorphism of tetralin derivative for treatment of cardiovascular diseases.

Authors:  Paola Taddei; Armida Torreggiani; Giancarlo Fini
Journal:  Biopolymers       Date:  2002       Impact factor: 2.505

4.  Differential inhibitory effect of newly synthesized pyridine-2-one derivatives on the cercarial serine protease activity of the parasite Schistosoma mansoni.

Authors:  Mahmoud Bahgat; Nagy Khalifa
Journal:  Acta Pol Pharm       Date:  2006 May-Jun       Impact factor: 0.330

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.