| Literature DB >> 22719509 |
Kiichi Amimoto1, Yuma Nishioka.
Abstract
In the title co-crystal, C(3)H(7)NO(2)·C(9)H(10)O(3), the (S)-alanine mol-ecule exists in the zwitterionic form stabilized by two pairs of N(+)-H⋯O(-) hydrogen bonds and an electrostatic inter-action between the ammonium center and the carboxyl-ate anion, forming a sheet along the ab plane. The carboxyl group of the (S)-2-phen-oxy-propionic acid mol-ecule is connected to the top and bottom of the sheet via N(+)-H⋯O=C and O-H⋯O(-) [R(2) (2)(7) graph set] hydrogen bonds, giving an (S,S)-homochiral layer, in which both methyl groups of (S)-alanine and the phenyl rings of (S)-2-phen-oxy-propionic acid are oriented in the same direction along the b axis.Entities:
Year: 2012 PMID: 22719509 PMCID: PMC3379311 DOI: 10.1107/S1600536812020727
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H7NO2·C9H10O3 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 3229 reflections |
| θ = 2.3–28.5° | |
| µ = 0.10 mm−1 | |
| β = 95.232 (5)° | Plate, colourless |
| 0.7 × 0.5 × 0.3 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2698 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 28.5°, θmin = 2.3° |
| Detector resolution: 8.333 pixels mm-1 | |
| phi and ω scan | |
| 3872 measured reflections | |
| 2742 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.17 e Å−3 | |
| 2742 reflections | Δρmin = −0.13 e Å−3 |
| 171 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.160 (9) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 930 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.4 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2142 (2) | 0.91172 (17) | 0.27450 (7) | 0.0400 (3) | |
| C2 | 0.2315 (3) | 0.9885 (2) | 0.19397 (8) | 0.0489 (3) | |
| H2 | 0.4105 | 1.0177 | 0.1867 | 0.059* | |
| C3 | 0.0685 (5) | 1.1604 (3) | 0.18625 (12) | 0.0785 (6) | |
| H3A | 0.0795 | 1.2125 | 0.1363 | 0.118* | |
| H3B | 0.1306 | 1.2461 | 0.2249 | 0.118* | |
| H3C | −0.1071 | 1.1307 | 0.1926 | 0.118* | |
| C4 | 0.2830 (3) | 0.7215 (2) | 0.12044 (7) | 0.0460 (3) | |
| C5 | 0.5113 (3) | 0.6774 (3) | 0.16181 (8) | 0.0531 (3) | |
| H5 | 0.5723 | 0.7466 | 0.2041 | 0.064* | |
| C6 | 0.6486 (4) | 0.5288 (3) | 0.13974 (10) | 0.0688 (5) | |
| H6 | 0.8015 | 0.4971 | 0.168 | 0.083* | |
| C7 | 0.5623 (4) | 0.4276 (3) | 0.07671 (12) | 0.0776 (6) | |
| H7 | 0.6572 | 0.3286 | 0.0622 | 0.093* | |
| C8 | 0.3355 (4) | 0.4726 (3) | 0.03498 (10) | 0.0708 (5) | |
| H8 | 0.2773 | 0.4045 | −0.0079 | 0.085* | |
| C9 | 0.1955 (3) | 0.6180 (2) | 0.05671 (8) | 0.0572 (4) | |
| H9 | 0.0412 | 0.6477 | 0.0288 | 0.069* | |
| C10 | 0.5537 (2) | 0.48177 (15) | 0.48456 (7) | 0.0332 (2) | |
| C11 | 0.6485 (2) | 0.55376 (16) | 0.41011 (6) | 0.0337 (2) | |
| H11 | 0.5119 | 0.6252 | 0.3823 | 0.04* | |
| C12 | 0.7222 (4) | 0.3969 (2) | 0.35972 (9) | 0.0634 (4) | |
| H12A | 0.7836 | 0.4441 | 0.3136 | 0.095* | |
| H12B | 0.5746 | 0.3217 | 0.3468 | 0.095* | |
| H12C | 0.855 | 0.3261 | 0.387 | 0.095* | |
| N1 | 0.87704 (17) | 0.67096 (13) | 0.42842 (5) | 0.0322 (2) | |
| H1A | 1.0014 | 0.6064 | 0.4537 | 0.048* | |
| H1B | 0.835 | 0.7636 | 0.4574 | 0.048* | |
| H1C | 0.9317 | 0.7131 | 0.3851 | 0.048* | |
| O1 | 0.3772 (2) | 0.98974 (17) | 0.32449 (6) | 0.0594 (3) | |
| O2 | 0.0633 (2) | 0.79618 (16) | 0.28881 (5) | 0.0556 (3) | |
| O3 | 0.1324 (2) | 0.86666 (16) | 0.13631 (5) | 0.0543 (3) | |
| O4 | 0.72311 (17) | 0.45179 (16) | 0.53819 (5) | 0.0478 (2) | |
| O5 | 0.32016 (16) | 0.45273 (15) | 0.48470 (6) | 0.0505 (3) | |
| H1O | 0.348 (4) | 0.961 (4) | 0.3808 (13) | 0.090 (7)* |
| C1 | 0.0455 (6) | 0.0409 (6) | 0.0347 (5) | −0.0023 (5) | 0.0092 (5) | 0.0001 (5) |
| C2 | 0.0571 (8) | 0.0507 (7) | 0.0405 (6) | −0.0004 (6) | 0.0123 (5) | 0.0086 (6) |
| C3 | 0.1025 (15) | 0.0610 (10) | 0.0741 (11) | 0.0222 (10) | 0.0188 (11) | 0.0239 (9) |
| C4 | 0.0487 (7) | 0.0597 (8) | 0.0306 (5) | −0.0026 (6) | 0.0090 (5) | 0.0051 (5) |
| C5 | 0.0523 (8) | 0.0688 (9) | 0.0387 (6) | 0.0046 (7) | 0.0064 (5) | −0.0053 (7) |
| C6 | 0.0626 (10) | 0.0849 (13) | 0.0604 (9) | 0.0170 (9) | 0.0138 (8) | −0.0034 (9) |
| C7 | 0.0906 (14) | 0.0761 (13) | 0.0697 (11) | 0.0092 (11) | 0.0269 (10) | −0.0153 (10) |
| C8 | 0.0871 (12) | 0.0749 (11) | 0.0527 (8) | −0.0212 (10) | 0.0184 (8) | −0.0165 (8) |
| C9 | 0.0613 (9) | 0.0745 (10) | 0.0355 (6) | −0.0130 (8) | 0.0029 (6) | 0.0007 (6) |
| C10 | 0.0292 (5) | 0.0326 (5) | 0.0387 (5) | 0.0014 (4) | 0.0078 (4) | 0.0082 (4) |
| C11 | 0.0309 (5) | 0.0378 (5) | 0.0321 (5) | −0.0065 (4) | 0.0009 (4) | 0.0051 (4) |
| C12 | 0.0933 (12) | 0.0534 (8) | 0.0457 (7) | −0.0229 (8) | 0.0179 (8) | −0.0170 (6) |
| N1 | 0.0313 (4) | 0.0328 (4) | 0.0335 (4) | −0.0041 (4) | 0.0076 (3) | 0.0015 (4) |
| O1 | 0.0697 (7) | 0.0685 (7) | 0.0406 (5) | −0.0264 (6) | 0.0089 (5) | −0.0073 (5) |
| O2 | 0.0657 (7) | 0.0647 (6) | 0.0372 (5) | −0.0238 (5) | 0.0086 (4) | 0.0042 (4) |
| O3 | 0.0563 (6) | 0.0709 (7) | 0.0348 (4) | 0.0084 (5) | −0.0010 (4) | 0.0028 (4) |
| O4 | 0.0364 (4) | 0.0718 (7) | 0.0358 (4) | 0.0054 (4) | 0.0060 (3) | 0.0173 (5) |
| O5 | 0.0288 (4) | 0.0571 (5) | 0.0663 (6) | −0.0030 (4) | 0.0082 (4) | 0.0240 (5) |
| C1—O2 | 1.2019 (17) | C7—H7 | 0.93 |
| C1—O1 | 1.2980 (18) | C8—C9 | 1.370 (3) |
| C1—C2 | 1.5281 (17) | C8—H8 | 0.93 |
| C2—O3 | 1.4124 (19) | C9—H9 | 0.93 |
| C2—C3 | 1.525 (3) | C10—O5 | 1.2398 (18) |
| C2—H2 | 0.98 | C10—O4 | 1.2494 (16) |
| C3—H3A | 0.96 | C10—C11 | 1.5298 (15) |
| C3—H3B | 0.96 | C11—N1 | 1.4848 (17) |
| C3—H3C | 0.96 | C11—C12 | 1.524 (2) |
| C4—O3 | 1.3708 (19) | C11—H11 | 0.98 |
| C4—C5 | 1.377 (2) | C12—H12A | 0.96 |
| C4—C9 | 1.393 (2) | C12—H12B | 0.96 |
| C5—C6 | 1.383 (3) | C12—H12C | 0.96 |
| C5—H5 | 0.93 | N1—H1A | 0.89 |
| C6—C7 | 1.373 (3) | N1—H1B | 0.89 |
| C6—H6 | 0.93 | N1—H1C | 0.89 |
| C7—C8 | 1.375 (3) | O1—H1O | 1.03 (2) |
| O2—C1—O1 | 125.16 (12) | C9—C8—H8 | 120.1 |
| O2—C1—C2 | 123.29 (12) | C7—C8—H8 | 120.1 |
| O1—C1—C2 | 111.53 (12) | C8—C9—C4 | 120.31 (18) |
| O3—C2—C3 | 107.36 (15) | C8—C9—H9 | 119.8 |
| O3—C2—C1 | 112.01 (12) | C4—C9—H9 | 119.8 |
| C3—C2—C1 | 108.02 (12) | O5—C10—O4 | 126.77 (11) |
| O3—C2—H2 | 109.8 | O5—C10—C11 | 117.18 (11) |
| C3—C2—H2 | 109.8 | O4—C10—C11 | 115.99 (10) |
| C1—C2—H2 | 109.8 | N1—C11—C12 | 108.94 (11) |
| C2—C3—H3A | 109.5 | N1—C11—C10 | 109.53 (9) |
| C2—C3—H3B | 109.5 | C12—C11—C10 | 110.39 (11) |
| H3A—C3—H3B | 109.5 | N1—C11—H11 | 109.3 |
| C2—C3—H3C | 109.5 | C12—C11—H11 | 109.3 |
| H3A—C3—H3C | 109.5 | C10—C11—H11 | 109.3 |
| H3B—C3—H3C | 109.5 | C11—C12—H12A | 109.5 |
| O3—C4—C5 | 124.33 (13) | C11—C12—H12B | 109.5 |
| O3—C4—C9 | 115.83 (14) | H12A—C12—H12B | 109.5 |
| C5—C4—C9 | 119.82 (15) | C11—C12—H12C | 109.5 |
| C4—C5—C6 | 119.16 (15) | H12A—C12—H12C | 109.5 |
| C4—C5—H5 | 120.4 | H12B—C12—H12C | 109.5 |
| C6—C5—H5 | 120.4 | C11—N1—H1A | 109.5 |
| C7—C6—C5 | 120.85 (19) | C11—N1—H1B | 109.5 |
| C7—C6—H6 | 119.6 | H1A—N1—H1B | 109.5 |
| C5—C6—H6 | 119.6 | C11—N1—H1C | 109.5 |
| C6—C7—C8 | 120.01 (19) | H1A—N1—H1C | 109.5 |
| C6—C7—H7 | 120 | H1B—N1—H1C | 109.5 |
| C8—C7—H7 | 120 | C1—O1—H1O | 114.0 (14) |
| C9—C8—C7 | 119.85 (17) | C4—O3—C2 | 117.36 (12) |
| H··· | ||||
| N1—H1 | 0.89 | 2.05 | 2.916 (3) | 165 |
| N1—H1 | 0.89 | 1.94 | 2.822 (3) | 170 |
| N1—H1 | 0.89 | 1.97 | 2.863 (3) | 177 |
| O1—H1 | 1.03 (2) | 1.50 (2) | 2.521 (3) | 169 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.89 | 2.05 | 2.916 (3) | 165 |
| N1—H1 | 0.89 | 1.94 | 2.822 (3) | 170 |
| N1—H1 | 0.89 | 1.97 | 2.863 (3) | 177 |
| O1—H1 | 1.03 (2) | 1.50 (2) | 2.521 (3) | 169 (2) |
Symmetry codes: (i) ; (ii) .