Literature DB >> 22719509

(S)-Alanine-(S)-2-phen-oxy-propionic acid (1/1).

Kiichi Amimoto1, Yuma Nishioka.   

Abstract

In the title co-crystal, C(3)H(7)NO(2)·C(9)H(10)O(3), the (S)-alanine mol-ecule exists in the zwitterionic form stabilized by two pairs of N(+)-H⋯O(-) hydrogen bonds and an electrostatic inter-action between the ammonium center and the carboxyl-ate anion, forming a sheet along the ab plane. The carboxyl group of the (S)-2-phen-oxy-propionic acid mol-ecule is connected to the top and bottom of the sheet via N(+)-H⋯O=C and O-H⋯O(-) [R(2) (2)(7) graph set] hydrogen bonds, giving an (S,S)-homochiral layer, in which both methyl groups of (S)-alanine and the phenyl rings of (S)-2-phen-oxy-propionic acid are oriented in the same direction along the b axis.

Entities:  

Year:  2012        PMID: 22719509      PMCID: PMC3379311          DOI: 10.1107/S1600536812020727

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of a chiral resolution agents, see: Hasegawa et al. (1998 ▶). For the crystal structure of enanti­omeric and racemic 2-phen­oxy­propionic acid, see: Sørensen & Larsen (2003 ▶). For the crystal structure of (S)-alanine–(R)-2-phen­oxy­propionic acid, see: Takahashi & Fujii (2004 ▶).

Experimental

Crystal data

C3H7NO2·C9H10O3 M = 255.27 Monoclinic, a = 5.227 (5) Å b = 7.364 (5) Å c = 17.493 (5) Å β = 95.232 (5)° V = 670.5 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.7 × 0.5 × 0.3 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 3872 measured reflections 2742 independent reflections 2698 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.081 S = 1.06 2742 reflections 171 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: Flack (1983 ▶), 930 Friedel pairs Flack parameter: −0.4 (8) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020727/ds2190sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020727/ds2190Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020727/ds2190Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H7NO2·C9H10O3F(000) = 272
Mr = 255.27Dx = 1.264 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ybCell parameters from 3229 reflections
a = 5.227 (5) Åθ = 2.3–28.5°
b = 7.364 (5) ŵ = 0.10 mm1
c = 17.493 (5) ÅT = 293 K
β = 95.232 (5)°Plate, colourless
V = 670.5 (8) Å30.7 × 0.5 × 0.3 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2698 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
Graphite monochromatorθmax = 28.5°, θmin = 2.3°
Detector resolution: 8.333 pixels mm-1h = −6→5
phi and ω scank = −9→9
3872 measured reflectionsl = −21→23
2742 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0452P)2 + 0.0566P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.081(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.17 e Å3
2742 reflectionsΔρmin = −0.13 e Å3
171 parametersExtinction correction: SHELXL97 (Sheldrick, 2008)
1 restraintExtinction coefficient: 0.160 (9)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 930 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.4 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2142 (2)0.91172 (17)0.27450 (7)0.0400 (3)
C20.2315 (3)0.9885 (2)0.19397 (8)0.0489 (3)
H20.41051.01770.18670.059*
C30.0685 (5)1.1604 (3)0.18625 (12)0.0785 (6)
H3A0.07951.21250.13630.118*
H3B0.13061.24610.22490.118*
H3C−0.10711.13070.19260.118*
C40.2830 (3)0.7215 (2)0.12044 (7)0.0460 (3)
C50.5113 (3)0.6774 (3)0.16181 (8)0.0531 (3)
H50.57230.74660.20410.064*
C60.6486 (4)0.5288 (3)0.13974 (10)0.0688 (5)
H60.80150.49710.1680.083*
C70.5623 (4)0.4276 (3)0.07671 (12)0.0776 (6)
H70.65720.32860.06220.093*
C80.3355 (4)0.4726 (3)0.03498 (10)0.0708 (5)
H80.27730.4045−0.00790.085*
C90.1955 (3)0.6180 (2)0.05671 (8)0.0572 (4)
H90.04120.64770.02880.069*
C100.5537 (2)0.48177 (15)0.48456 (7)0.0332 (2)
C110.6485 (2)0.55376 (16)0.41011 (6)0.0337 (2)
H110.51190.62520.38230.04*
C120.7222 (4)0.3969 (2)0.35972 (9)0.0634 (4)
H12A0.78360.44410.31360.095*
H12B0.57460.32170.34680.095*
H12C0.8550.32610.3870.095*
N10.87704 (17)0.67096 (13)0.42842 (5)0.0322 (2)
H1A1.00140.60640.45370.048*
H1B0.8350.76360.45740.048*
H1C0.93170.71310.38510.048*
O10.3772 (2)0.98974 (17)0.32449 (6)0.0594 (3)
O20.0633 (2)0.79618 (16)0.28881 (5)0.0556 (3)
O30.1324 (2)0.86666 (16)0.13631 (5)0.0543 (3)
O40.72311 (17)0.45179 (16)0.53819 (5)0.0478 (2)
O50.32016 (16)0.45273 (15)0.48470 (6)0.0505 (3)
H1O0.348 (4)0.961 (4)0.3808 (13)0.090 (7)*
U11U22U33U12U13U23
C10.0455 (6)0.0409 (6)0.0347 (5)−0.0023 (5)0.0092 (5)0.0001 (5)
C20.0571 (8)0.0507 (7)0.0405 (6)−0.0004 (6)0.0123 (5)0.0086 (6)
C30.1025 (15)0.0610 (10)0.0741 (11)0.0222 (10)0.0188 (11)0.0239 (9)
C40.0487 (7)0.0597 (8)0.0306 (5)−0.0026 (6)0.0090 (5)0.0051 (5)
C50.0523 (8)0.0688 (9)0.0387 (6)0.0046 (7)0.0064 (5)−0.0053 (7)
C60.0626 (10)0.0849 (13)0.0604 (9)0.0170 (9)0.0138 (8)−0.0034 (9)
C70.0906 (14)0.0761 (13)0.0697 (11)0.0092 (11)0.0269 (10)−0.0153 (10)
C80.0871 (12)0.0749 (11)0.0527 (8)−0.0212 (10)0.0184 (8)−0.0165 (8)
C90.0613 (9)0.0745 (10)0.0355 (6)−0.0130 (8)0.0029 (6)0.0007 (6)
C100.0292 (5)0.0326 (5)0.0387 (5)0.0014 (4)0.0078 (4)0.0082 (4)
C110.0309 (5)0.0378 (5)0.0321 (5)−0.0065 (4)0.0009 (4)0.0051 (4)
C120.0933 (12)0.0534 (8)0.0457 (7)−0.0229 (8)0.0179 (8)−0.0170 (6)
N10.0313 (4)0.0328 (4)0.0335 (4)−0.0041 (4)0.0076 (3)0.0015 (4)
O10.0697 (7)0.0685 (7)0.0406 (5)−0.0264 (6)0.0089 (5)−0.0073 (5)
O20.0657 (7)0.0647 (6)0.0372 (5)−0.0238 (5)0.0086 (4)0.0042 (4)
O30.0563 (6)0.0709 (7)0.0348 (4)0.0084 (5)−0.0010 (4)0.0028 (4)
O40.0364 (4)0.0718 (7)0.0358 (4)0.0054 (4)0.0060 (3)0.0173 (5)
O50.0288 (4)0.0571 (5)0.0663 (6)−0.0030 (4)0.0082 (4)0.0240 (5)
C1—O21.2019 (17)C7—H70.93
C1—O11.2980 (18)C8—C91.370 (3)
C1—C21.5281 (17)C8—H80.93
C2—O31.4124 (19)C9—H90.93
C2—C31.525 (3)C10—O51.2398 (18)
C2—H20.98C10—O41.2494 (16)
C3—H3A0.96C10—C111.5298 (15)
C3—H3B0.96C11—N11.4848 (17)
C3—H3C0.96C11—C121.524 (2)
C4—O31.3708 (19)C11—H110.98
C4—C51.377 (2)C12—H12A0.96
C4—C91.393 (2)C12—H12B0.96
C5—C61.383 (3)C12—H12C0.96
C5—H50.93N1—H1A0.89
C6—C71.373 (3)N1—H1B0.89
C6—H60.93N1—H1C0.89
C7—C81.375 (3)O1—H1O1.03 (2)
O2—C1—O1125.16 (12)C9—C8—H8120.1
O2—C1—C2123.29 (12)C7—C8—H8120.1
O1—C1—C2111.53 (12)C8—C9—C4120.31 (18)
O3—C2—C3107.36 (15)C8—C9—H9119.8
O3—C2—C1112.01 (12)C4—C9—H9119.8
C3—C2—C1108.02 (12)O5—C10—O4126.77 (11)
O3—C2—H2109.8O5—C10—C11117.18 (11)
C3—C2—H2109.8O4—C10—C11115.99 (10)
C1—C2—H2109.8N1—C11—C12108.94 (11)
C2—C3—H3A109.5N1—C11—C10109.53 (9)
C2—C3—H3B109.5C12—C11—C10110.39 (11)
H3A—C3—H3B109.5N1—C11—H11109.3
C2—C3—H3C109.5C12—C11—H11109.3
H3A—C3—H3C109.5C10—C11—H11109.3
H3B—C3—H3C109.5C11—C12—H12A109.5
O3—C4—C5124.33 (13)C11—C12—H12B109.5
O3—C4—C9115.83 (14)H12A—C12—H12B109.5
C5—C4—C9119.82 (15)C11—C12—H12C109.5
C4—C5—C6119.16 (15)H12A—C12—H12C109.5
C4—C5—H5120.4H12B—C12—H12C109.5
C6—C5—H5120.4C11—N1—H1A109.5
C7—C6—C5120.85 (19)C11—N1—H1B109.5
C7—C6—H6119.6H1A—N1—H1B109.5
C5—C6—H6119.6C11—N1—H1C109.5
C6—C7—C8120.01 (19)H1A—N1—H1C109.5
C6—C7—H7120H1B—N1—H1C109.5
C8—C7—H7120C1—O1—H1O114.0 (14)
C9—C8—C7119.85 (17)C4—O3—C2117.36 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O5i0.892.052.916 (3)165
N1—H1B···O5ii0.891.942.822 (3)170
N1—H1C···O2i0.891.972.863 (3)177
O1—H1O···O4ii1.03 (2)1.50 (2)2.521 (3)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O5i0.892.052.916 (3)165
N1—H1B⋯O5ii0.891.942.822 (3)170
N1—H1C⋯O2i0.891.972.863 (3)177
O1—H1O⋯O4ii1.03 (2)1.50 (2)2.521 (3)169 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogen bonding in enantiomeric versus racemic mono-carboxylic acids; a case study of 2-phenoxypropionic acid.

Authors:  Henning Osholm Sørensen; Sine Larsen
Journal:  Acta Crystallogr B       Date:  2003-01-28
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.