Literature DB >> 22719505

1,4-Ditosyl-1,4-diazepane.

Shuang-Hua Yang1, Zhi-Wei Zhai.   

Abstract

In the title compound, C(19)H(24)N(2)O(4)S(2), the dihedral angle formed by the benzene rings is 82.88 (7)°, and the mol-ecular conformation is enforced by weak intra-molecular C-H⋯O contacts. Two C atoms of the 1,4-diazepane ring are disordered over two sets of sites with a refined occupancy ratio of 0.534 (13):0.466 (13). In the crystal, mol-ecules are linked by weak inter-molecular C-H⋯O inter-actions into chains parallel to the a axis.

Entities:  

Year:  2012        PMID: 22719505      PMCID: PMC3379307          DOI: 10.1107/S1600536812020958

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Romba et al. (2002 ▶). For the biological activity of heterocyclic compounds, see: Xu et al. (2006 ▶); Yu et al. (2009 ▶).

Experimental

Crystal data

C19H24N2O4S2 M = 408.52 Orthorhombic, a = 6.3407 (13) Å b = 10.367 (2) Å c = 30.516 (6) Å V = 2005.9 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.20 × 0.20 × 0.10 mm

Data collection

Rigaku Mercury CCD/AFC diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.944, T max = 0.971 11747 measured reflections 3531 independent reflections 3430 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.083 S = 1.07 3531 reflections 265 parameters 6 restraints H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1442 Friedel pairs Flack parameter: −0.03 (7) Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020958/rz2746sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020958/rz2746Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020958/rz2746Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24N2O4S2F(000) = 864
Mr = 408.52Dx = 1.353 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7269 reflections
a = 6.3407 (13) Åθ = 1.7–27.5°
b = 10.367 (2) ŵ = 0.29 mm1
c = 30.516 (6) ÅT = 173 K
V = 2005.9 (7) Å3Block, colourless
Z = 40.20 × 0.20 × 0.10 mm
Rigaku Mercury CCD/AFC diffractometer3531 independent reflections
Radiation source: Sealed Tube3430 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.035
φ and ω scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)h = −7→7
Tmin = 0.944, Tmax = 0.971k = −8→12
11747 measured reflectionsl = −36→35
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.035P)2 + 0.4874P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3531 reflectionsΔρmax = 0.13 e Å3
265 parametersΔρmin = −0.20 e Å3
6 restraintsAbsolute structure: Flack (1983), 1442 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.84854 (9)−0.00702 (6)0.40081 (2)0.04437 (16)
S20.83732 (9)0.12928 (5)0.22154 (2)0.03921 (15)
O10.7421 (3)0.08375 (18)0.42783 (6)0.0594 (5)
O21.0685 (3)0.0089 (2)0.39251 (7)0.0716 (6)
O30.7251 (3)0.24688 (15)0.21378 (6)0.0501 (4)
O41.0600 (2)0.13432 (18)0.22902 (6)0.0532 (5)
N10.7323 (3)−0.0080 (2)0.35377 (6)0.0439 (5)
N20.7313 (3)0.06018 (17)0.26359 (6)0.0388 (5)
C10.6335 (4)−0.1951 (3)0.44536 (8)0.0511 (6)
H10.5214−0.13740.44640.061*
C20.6164 (5)−0.3155 (3)0.46458 (8)0.0603 (8)
H20.4911−0.33860.47830.072*
C30.7831 (6)−0.4029 (3)0.46375 (8)0.0618 (8)
C40.9649 (5)−0.3682 (3)0.44218 (9)0.0589 (7)
H41.0765−0.42630.44080.071*
C50.9853 (4)−0.2489 (3)0.42246 (8)0.0495 (6)
H51.1091−0.22740.40790.059*
C60.8205 (4)−0.1615 (2)0.42453 (7)0.0419 (5)
C8A0.8715 (15)−0.0801 (9)0.3232 (2)0.044 (2)0.466 (13)
H8A10.8801−0.16950.33230.053*0.466 (13)
H8A21.0125−0.04380.32410.053*0.466 (13)
C9A0.7867 (18)−0.0729 (7)0.2768 (3)0.040 (2)0.466 (13)
H9A10.8920−0.10650.25680.048*0.466 (13)
H9A20.6624−0.12700.27450.048*0.466 (13)
C8B0.7774 (14)−0.1092 (6)0.31983 (19)0.0377 (15)0.534 (13)
H8B10.6480−0.15440.31260.045*0.534 (13)
H8B20.8765−0.17140.33160.045*0.534 (13)
C9B0.8687 (11)−0.0489 (7)0.2785 (3)0.0353 (17)0.534 (13)
H9B11.0098−0.01730.28440.042*0.534 (13)
H9B20.8778−0.11350.25560.042*0.534 (13)
C100.5022 (4)0.0686 (3)0.26975 (8)0.0517 (7)
H10A0.4390−0.01440.26330.062*
H10B0.44470.13120.24940.062*
C110.4459 (4)0.1078 (3)0.31613 (9)0.0518 (7)
H11A0.51500.18910.32260.062*
H11B0.29500.12260.31750.062*
C120.5040 (4)0.0126 (3)0.35127 (8)0.0536 (7)
H12A0.45350.04380.37930.064*
H12B0.4350−0.06910.34530.064*
C130.7984 (4)0.0278 (2)0.17594 (7)0.0394 (5)
C140.9546 (4)−0.0588 (2)0.16374 (8)0.0449 (6)
H141.0803−0.06300.17940.054*
C150.9215 (4)−0.1392 (3)0.12792 (8)0.0515 (6)
H151.0266−0.19680.11960.062*
C160.7342 (5)−0.1350 (3)0.10436 (9)0.0521 (6)
C170.5795 (4)−0.0506 (3)0.11791 (9)0.0543 (7)
H170.4521−0.04860.10280.065*
C180.6080 (4)0.0313 (2)0.15328 (8)0.0469 (6)
H180.50150.08770.16180.056*
C190.7052 (6)−0.2180 (3)0.06426 (9)0.0691 (9)
H19A0.5637−0.25090.06360.104*
H19B0.8030−0.28870.06520.104*
H19C0.7305−0.16730.03850.104*
C70.7658 (6)−0.5318 (3)0.48659 (10)0.0877 (12)
H7A0.7705−0.59970.46520.131*
H7B0.6349−0.53590.50230.131*
H7C0.8810−0.54150.50670.131*
U11U22U33U12U13U23
S10.0326 (3)0.0467 (3)0.0537 (3)−0.0031 (3)0.0021 (3)0.0001 (3)
S20.0305 (3)0.0333 (3)0.0538 (3)−0.0003 (2)−0.0042 (3)0.0032 (3)
O10.0676 (13)0.0522 (11)0.0584 (11)0.0016 (9)−0.0065 (9)−0.0171 (9)
O20.0299 (9)0.0798 (14)0.1052 (15)−0.0070 (10)0.0024 (10)0.0327 (13)
O30.0498 (10)0.0296 (8)0.0710 (12)0.0033 (7)−0.0041 (9)0.0093 (8)
O40.0271 (8)0.0608 (11)0.0717 (12)−0.0036 (8)−0.0061 (8)−0.0080 (10)
N10.0411 (11)0.0450 (11)0.0457 (10)0.0089 (9)0.0087 (9)−0.0023 (10)
N20.0373 (11)0.0326 (10)0.0464 (11)0.0048 (8)−0.0031 (9)0.0025 (9)
C10.0479 (15)0.0597 (16)0.0458 (13)−0.0042 (13)0.0092 (12)−0.0037 (12)
C20.073 (2)0.0680 (18)0.0401 (14)−0.0238 (16)0.0104 (14)−0.0042 (13)
C30.094 (2)0.0522 (16)0.0395 (14)−0.0121 (16)−0.0093 (15)−0.0031 (12)
C40.077 (2)0.0505 (15)0.0497 (15)0.0081 (16)−0.0049 (14)−0.0054 (13)
C50.0482 (15)0.0590 (16)0.0413 (14)0.0046 (13)0.0025 (12)−0.0031 (12)
C60.0394 (13)0.0492 (14)0.0370 (12)−0.0026 (11)0.0018 (11)−0.0036 (10)
C8A0.035 (4)0.050 (4)0.048 (4)0.011 (4)0.005 (3)0.006 (3)
C9A0.046 (5)0.031 (3)0.043 (4)−0.001 (3)−0.004 (4)0.001 (3)
C8B0.036 (4)0.041 (3)0.036 (3)0.002 (3)0.003 (3)−0.005 (2)
C9B0.035 (4)0.030 (3)0.041 (3)0.006 (2)−0.001 (3)0.001 (3)
C100.0334 (13)0.0642 (17)0.0576 (16)−0.0106 (12)−0.0099 (11)0.0107 (14)
C110.0268 (11)0.0530 (16)0.0758 (18)0.0059 (11)−0.0004 (12)−0.0106 (13)
C120.0353 (13)0.0765 (19)0.0491 (14)−0.0133 (13)0.0033 (11)−0.0035 (15)
C130.0356 (12)0.0383 (12)0.0442 (12)−0.0016 (10)−0.0024 (10)0.0101 (10)
C140.0402 (13)0.0438 (13)0.0506 (14)0.0029 (11)−0.0007 (12)0.0061 (12)
C150.0561 (16)0.0442 (14)0.0543 (15)0.0045 (13)0.0055 (13)0.0047 (13)
C160.0640 (17)0.0446 (13)0.0477 (14)−0.0054 (13)−0.0038 (13)0.0051 (13)
C170.0542 (16)0.0577 (16)0.0511 (14)−0.0062 (13)−0.0158 (13)0.0090 (13)
C180.0413 (14)0.0464 (14)0.0529 (14)0.0032 (11)−0.0066 (11)0.0019 (11)
C190.092 (2)0.0543 (17)0.0613 (18)−0.0067 (17)−0.0096 (17)−0.0056 (14)
C70.140 (4)0.063 (2)0.0591 (18)−0.028 (2)−0.021 (2)0.0131 (15)
S1—O11.4216 (19)C8B—C9B1.522 (7)
S1—O21.4273 (18)C8B—H8B10.9700
S1—N11.614 (2)C8B—H8B20.9700
S1—C61.766 (2)C9B—H9B10.9700
S2—O41.4313 (17)C9B—H9B20.9700
S2—O31.4313 (16)C10—C111.515 (4)
S2—N21.616 (2)C10—H10A0.9700
S2—C131.762 (2)C10—H10B0.9700
N1—C121.465 (3)C11—C121.504 (4)
N1—C8A1.486 (6)C11—H11A0.9700
N1—C8B1.502 (5)C11—H11B0.9700
N2—C101.467 (3)C12—H12A0.9700
N2—C9A1.480 (7)C12—H12B0.9700
N2—C9B1.499 (6)C13—C141.388 (3)
C1—C21.384 (4)C13—C181.392 (3)
C1—C61.389 (4)C14—C151.391 (4)
C1—H10.9300C14—H140.9300
C2—C31.392 (4)C15—C161.389 (4)
C2—H20.9300C15—H150.9300
C3—C41.375 (4)C16—C171.378 (4)
C3—C71.511 (4)C16—C191.507 (4)
C4—C51.381 (4)C17—C181.385 (4)
C4—H40.9300C17—H170.9300
C5—C61.385 (3)C18—H180.9300
C5—H50.9300C19—H19A0.9600
C8A—C9A1.516 (8)C19—H19B0.9600
C8A—H8A10.9700C19—H19C0.9600
C8A—H8A20.9700C7—H7A0.9600
C9A—H9A10.9700C7—H7B0.9600
C9A—H9A20.9700C7—H7C0.9600
O1—S1—O2119.36 (13)C9B—C8B—H8B2109.5
O1—S1—N1107.66 (11)H8B1—C8B—H8B2108.0
O2—S1—N1106.80 (12)N2—C9B—C8B109.9 (5)
O1—S1—C6108.33 (12)N2—C9B—H9B1109.7
O2—S1—C6106.02 (12)C8B—C9B—H9B1109.7
N1—S1—C6108.25 (11)N2—C9B—H9B2109.7
O4—S2—O3119.05 (11)C8B—C9B—H9B2109.7
O4—S2—N2107.45 (11)H9B1—C9B—H9B2108.2
O3—S2—N2107.59 (10)N2—C10—C11111.7 (2)
O4—S2—C13106.62 (11)N2—C10—H10A109.3
O3—S2—C13107.95 (11)C11—C10—H10A109.3
N2—S2—C13107.71 (10)N2—C10—H10B109.3
C12—N1—C8A128.8 (4)C11—C10—H10B109.3
C12—N1—C8B104.7 (4)H10A—C10—H10B107.9
C12—N1—S1119.77 (16)C12—C11—C10115.6 (2)
C8A—N1—S1106.9 (3)C12—C11—H11A108.4
C8B—N1—S1122.1 (3)C10—C11—H11A108.4
C10—N2—C9A104.8 (5)C12—C11—H11B108.4
C10—N2—C9B125.6 (3)C10—C11—H11B108.4
C10—N2—S2119.14 (16)H11A—C11—H11B107.4
C9A—N2—S2122.1 (5)N1—C12—C11112.0 (2)
C9B—N2—S2109.5 (3)N1—C12—H12A109.2
C2—C1—C6119.2 (3)C11—C12—H12A109.2
C2—C1—H1120.4N1—C12—H12B109.2
C6—C1—H1120.4C11—C12—H12B109.2
C1—C2—C3121.3 (3)H12A—C12—H12B107.9
C1—C2—H2119.3C14—C13—C18120.2 (2)
C3—C2—H2119.3C14—C13—S2119.87 (18)
C4—C3—C2118.4 (3)C18—C13—S2119.90 (19)
C4—C3—C7120.9 (3)C13—C14—C15119.4 (2)
C2—C3—C7120.8 (3)C13—C14—H14120.3
C3—C4—C5121.4 (3)C15—C14—H14120.3
C3—C4—H4119.3C16—C15—C14121.1 (3)
C5—C4—H4119.3C16—C15—H15119.4
C4—C5—C6119.7 (3)C14—C15—H15119.4
C4—C5—H5120.1C17—C16—C15118.3 (3)
C6—C5—H5120.1C17—C16—C19121.3 (3)
C5—C6—C1120.0 (2)C15—C16—C19120.5 (3)
C5—C6—S1119.9 (2)C16—C17—C18122.0 (3)
C1—C6—S1120.1 (2)C16—C17—H17119.0
N1—C8A—C9A110.6 (7)C18—C17—H17119.0
N1—C8A—H8A1109.5C17—C18—C13119.0 (2)
C9A—C8A—H8A1109.5C17—C18—H18120.5
N1—C8A—H8A2109.5C13—C18—H18120.5
C9A—C8A—H8A2109.5C16—C19—H19A109.5
H8A1—C8A—H8A2108.1C16—C19—H19B109.5
N2—C9A—C8A112.6 (6)H19A—C19—H19B109.5
N2—C9A—H9A1109.1C16—C19—H19C109.5
C8A—C9A—H9A1109.1H19A—C19—H19C109.5
N2—C9A—H9A2109.1H19B—C19—H19C109.5
C8A—C9A—H9A2109.1C3—C7—H7A109.5
H9A1—C9A—H9A2107.8C3—C7—H7B109.5
N1—C8B—C9B110.9 (6)H7A—C7—H7B109.5
N1—C8B—H8B1109.5C3—C7—H7C109.5
C9B—C8B—H8B1109.5H7A—C7—H7C109.5
N1—C8B—H8B2109.5H7B—C7—H7C109.5
O1—S1—N1—C12−34.0 (3)S1—N1—C8A—C9A−173.6 (8)
O2—S1—N1—C12−163.3 (2)C10—N2—C9A—C8A−98.8 (10)
C6—S1—N1—C1282.9 (2)C9B—N2—C9A—C8A60.8 (13)
O1—S1—N1—C8A167.7 (5)S2—N2—C9A—C8A121.8 (9)
O2—S1—N1—C8A38.4 (5)N1—C8A—C9A—N248.4 (15)
C6—S1—N1—C8A−75.4 (5)C12—N1—C8B—C9B101.7 (7)
O1—S1—N1—C8B−168.7 (4)C8A—N1—C8B—C9B−57.8 (9)
O2—S1—N1—C8B62.0 (4)S1—N1—C8B—C9B−118.0 (6)
C6—S1—N1—C8B−51.8 (4)C10—N2—C9B—C8B−30.9 (10)
O4—S2—N2—C10165.87 (18)C9A—N2—C9B—C8B−55.4 (14)
O3—S2—N2—C1036.5 (2)S2—N2—C9B—C8B176.4 (6)
C13—S2—N2—C10−79.6 (2)N1—C8B—C9B—N2−51.2 (11)
O4—S2—N2—C9A−60.1 (4)C9A—N2—C10—C1187.3 (4)
O3—S2—N2—C9A170.6 (4)C9B—N2—C10—C1177.9 (6)
C13—S2—N2—C9A54.4 (4)S2—N2—C10—C11−131.8 (2)
O4—S2—N2—C9B−39.4 (4)N2—C10—C11—C12−65.3 (3)
O3—S2—N2—C9B−168.8 (4)C8A—N1—C12—C11−73.4 (6)
C13—S2—N2—C9B75.1 (4)C8B—N1—C12—C11−84.8 (3)
C6—C1—C2—C30.5 (4)S1—N1—C12—C11133.74 (19)
C1—C2—C3—C4−1.8 (4)C10—C11—C12—N162.6 (3)
C1—C2—C3—C7177.3 (3)O4—S2—C13—C1420.1 (2)
C2—C3—C4—C51.3 (4)O3—S2—C13—C14149.10 (19)
C7—C3—C4—C5−177.7 (3)N2—S2—C13—C14−95.0 (2)
C3—C4—C5—C60.4 (4)O4—S2—C13—C18−162.33 (19)
C4—C5—C6—C1−1.7 (4)O3—S2—C13—C18−33.3 (2)
C4—C5—C6—S1178.10 (19)N2—S2—C13—C1882.6 (2)
C2—C1—C6—C51.2 (4)C18—C13—C14—C151.9 (4)
C2—C1—C6—S1−178.58 (19)S2—C13—C14—C15179.45 (18)
O1—S1—C6—C5−143.5 (2)C13—C14—C15—C16−0.5 (4)
O2—S1—C6—C5−14.2 (2)C14—C15—C16—C17−1.3 (4)
N1—S1—C6—C5100.1 (2)C14—C15—C16—C19176.9 (2)
O1—S1—C6—C136.3 (2)C15—C16—C17—C181.6 (4)
O2—S1—C6—C1165.6 (2)C19—C16—C17—C18−176.5 (3)
N1—S1—C6—C1−80.1 (2)C16—C17—C18—C13−0.3 (4)
C12—N1—C8A—C9A30.8 (12)C14—C13—C18—C17−1.5 (4)
C8B—N1—C8A—C9A56.6 (10)S2—C13—C18—C17−179.09 (19)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O30.972.402.886 (3)110
C12—H12A···O10.972.392.878 (3)111
C10—H10B···O4i0.972.523.142 (3)122
C12—H12A···O2i0.972.503.035 (3)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯O30.972.402.886 (3)110
C12—H12A⋯O10.972.392.878 (3)111
C10—H10B⋯O4i0.972.523.142 (3)122
C12—H12A⋯O2i0.972.503.035 (3)115

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and fungicidal evaluation of 2-arylphenyl ether-3-(1H-1,2,4-triazol-1-yl)propan-2-ol derivatives.

Authors:  Guan-Ping Yu; Liang-Zhong Xu; Xu Yi; Wen-Zhao Bi; Qi Zhu; Zhi-Wei Zhai
Journal:  J Agric Food Chem       Date:  2009-06-10       Impact factor: 5.279

  2 in total

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