Literature DB >> 22719497

N-Methyl-pyrrolidine-1-carbothio-amide.

M Naveed Umar, M Nawaz Tahir, Mohammad Shoaib, Akbar Ali, Imran Khan.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(6)H(12)N(2)S, in which the N-methyl-thio-formamide unit and the pyrrolidine ring mean plane are oriented at dihedral angles of 5.9 (5) and 5.9 (4)°. In the crystal, zigzag C(4) chains extending along the a axis are formed due to N-H⋯S hydrogen bonds between alternate arrangements of mol-ecules. The chains are inter-linked by C-H⋯S hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719497      PMCID: PMC3379299          DOI: 10.1107/S1600536812020971

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Jiang (2009 ▶). For graph–set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H12N2S M = 144.25 Triclinic, a = 8.616 (2) Å b = 9.077 (2) Å c = 10.796 (3) Å α = 73.725 (14)° β = 86.656 (15)° γ = 76.177 (16)° V = 787.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.957, T max = 0.966 9119 measured reflections 2699 independent reflections 1385 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.262 S = 1.04 2699 reflections 165 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020971/bq2355sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020971/bq2355Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020971/bq2355Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N2SZ = 4
Mr = 144.25F(000) = 312
Triclinic, P1Dx = 1.217 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.616 (2) ÅCell parameters from 1204 reflections
b = 9.077 (2) Åθ = 2.4–26.0°
c = 10.796 (3) ŵ = 0.33 mm1
α = 73.725 (14)°T = 296 K
β = 86.656 (15)°Prism, colorless
γ = 76.177 (16)°0.30 × 0.25 × 0.20 mm
V = 787.0 (3) Å3
Bruker Kappa APEXII CCD diffractometer2699 independent reflections
Radiation source: fine-focus sealed tube1385 reflections with I > 3σ(I)
Graphite monochromatorRint = 0.067
Detector resolution: 8.10 pixels mm-1θmax = 25.0°, θmin = 2.4°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −11→11
Tmin = 0.957, Tmax = 0.966l = −13→13
9119 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.079Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.262H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1268P)2 + 0.3916P] where P = (Fo2 + 2Fc2)/3
2699 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4239 (8)0.1340 (7)0.3083 (6)0.101 (2)
H1A0.31860.12090.33500.151*
H1B0.49650.08620.38030.151*
H1C0.45860.08440.24060.151*
C20.3360 (6)0.3972 (7)0.1594 (5)0.0699 (14)
C30.2574 (7)0.6685 (8)0.0191 (5)0.0913 (18)
H3A0.29610.6484−0.06220.110*
H3B0.14370.67320.02480.110*
C40.2906 (12)0.8143 (10)0.0304 (9)0.153 (3)
H4A0.34520.8611−0.04630.184*
H4B0.19060.88850.03650.184*
C50.3868 (11)0.7860 (8)0.1411 (7)0.123 (3)
H5A0.32650.83610.20300.148*
H5B0.48010.82970.11660.148*
C60.4365 (7)0.6143 (7)0.1987 (5)0.0846 (17)
H6A0.41230.58690.29000.101*
H6B0.55030.57640.18800.101*
C70.0612 (8)0.8849 (7)0.7020 (6)0.0905 (18)
H7A0.16610.89680.71560.136*
H7B−0.00820.91090.76950.136*
H7C0.01990.95420.62020.136*
C80.1664 (6)0.6492 (6)0.6253 (4)0.0668 (14)
C90.2534 (7)0.4014 (7)0.5615 (5)0.0791 (15)
H9A0.36720.38460.57540.095*
H9B0.22920.44970.47040.095*
C100.2012 (10)0.2515 (9)0.6076 (8)0.126 (3)
H10A0.12970.24370.54470.151*
H10B0.29300.16270.61930.151*
C110.1210 (11)0.2487 (8)0.7269 (7)0.125 (3)
H11A0.19330.18640.79800.150*
H11B0.03070.20090.73140.150*
C120.0651 (7)0.4120 (6)0.7365 (5)0.0768 (15)
H12A−0.04810.45150.71650.092*
H12B0.08460.41830.82220.092*
N10.4210 (5)0.2971 (5)0.2626 (4)0.0771 (13)
H10.47750.33480.30370.093*
N20.3437 (5)0.5463 (6)0.1280 (4)0.0739 (12)
N30.0697 (5)0.7250 (5)0.7032 (4)0.0746 (12)
H40.01000.67400.75640.089*
N40.1603 (5)0.5002 (5)0.6404 (4)0.0677 (11)
S10.22218 (19)0.3304 (2)0.07310 (14)0.0932 (6)
S20.28575 (19)0.74016 (18)0.51593 (13)0.0881 (6)
U11U22U33U12U13U23
C10.122 (5)0.099 (5)0.083 (4)−0.026 (4)−0.013 (4)−0.024 (4)
C20.071 (3)0.102 (4)0.040 (3)−0.018 (3)0.003 (2)−0.027 (3)
C30.087 (4)0.116 (5)0.060 (3)−0.020 (4)−0.009 (3)−0.007 (3)
C40.202 (10)0.116 (6)0.127 (7)−0.046 (6)−0.058 (7)0.007 (5)
C50.180 (8)0.100 (5)0.095 (5)−0.040 (5)−0.017 (5)−0.025 (4)
C60.102 (4)0.107 (5)0.052 (3)−0.030 (4)−0.004 (3)−0.027 (3)
C70.115 (5)0.085 (4)0.078 (4)−0.024 (3)0.000 (3)−0.032 (3)
C80.071 (3)0.088 (4)0.042 (3)−0.018 (3)−0.014 (2)−0.016 (3)
C90.081 (4)0.100 (4)0.061 (3)−0.013 (3)−0.001 (3)−0.035 (3)
C100.154 (7)0.104 (5)0.136 (7)−0.036 (5)0.023 (6)−0.061 (5)
C110.187 (8)0.088 (5)0.109 (6)−0.044 (5)0.038 (5)−0.036 (4)
C120.093 (4)0.096 (4)0.050 (3)−0.038 (3)0.000 (3)−0.021 (3)
N10.088 (3)0.093 (3)0.054 (3)−0.023 (3)−0.011 (2)−0.022 (2)
N20.081 (3)0.098 (3)0.041 (2)−0.020 (3)−0.009 (2)−0.017 (2)
N30.090 (3)0.086 (3)0.055 (3)−0.031 (2)0.008 (2)−0.023 (2)
N40.083 (3)0.080 (3)0.045 (2)−0.021 (2)−0.001 (2)−0.023 (2)
S10.0962 (12)0.1408 (15)0.0594 (9)−0.0374 (10)−0.0056 (8)−0.0447 (9)
S20.0935 (12)0.1108 (13)0.0601 (9)−0.0357 (9)0.0018 (8)−0.0135 (8)
C1—N11.418 (7)C7—H7A0.9600
C1—H1A0.9600C7—H7B0.9600
C1—H1B0.9600C7—H7C0.9600
C1—H1C0.9600C8—N41.330 (6)
C2—N21.316 (6)C8—N31.358 (6)
C2—N11.346 (6)C8—S21.688 (5)
C2—S11.705 (5)C9—N41.475 (6)
C3—C41.457 (9)C9—C101.480 (9)
C3—N21.464 (7)C9—H9A0.9700
C3—H3A0.9700C9—H9B0.9700
C3—H3B0.9700C10—C111.422 (10)
C4—C51.423 (10)C10—H10A0.9700
C4—H4A0.9700C10—H10B0.9700
C4—H4B0.9700C11—C121.476 (8)
C5—C61.473 (8)C11—H11A0.9700
C5—H5A0.9700C11—H11B0.9700
C5—H5B0.9700C12—N41.462 (6)
C6—N21.474 (6)C12—H12A0.9700
C6—H6A0.9700C12—H12B0.9700
C6—H6B0.9700N1—H10.8600
C7—N31.432 (6)N3—H40.8600
N1—C1—H1A109.5N4—C8—N3115.8 (5)
N1—C1—H1B109.5N4—C8—S2122.6 (4)
H1A—C1—H1B109.5N3—C8—S2121.6 (4)
N1—C1—H1C109.5N4—C9—C10103.7 (5)
H1A—C1—H1C109.5N4—C9—H9A111.0
H1B—C1—H1C109.5C10—C9—H9A111.0
N2—C2—N1118.2 (4)N4—C9—H9B111.0
N2—C2—S1121.6 (4)C10—C9—H9B111.0
N1—C2—S1120.2 (4)H9A—C9—H9B109.0
C4—C3—N2104.4 (5)C11—C10—C9108.4 (6)
C4—C3—H3A110.9C11—C10—H10A110.0
N2—C3—H3A110.9C9—C10—H10A110.0
C4—C3—H3B110.9C11—C10—H10B110.0
N2—C3—H3B110.9C9—C10—H10B110.0
H3A—C3—H3B108.9H10A—C10—H10B108.4
C5—C4—C3111.2 (6)C10—C11—C12108.9 (6)
C5—C4—H4A109.4C10—C11—H11A109.9
C3—C4—H4A109.4C12—C11—H11A109.9
C5—C4—H4B109.4C10—C11—H11B109.9
C3—C4—H4B109.4C12—C11—H11B109.9
H4A—C4—H4B108.0H11A—C11—H11B108.3
C4—C5—C6108.3 (6)N4—C12—C11103.6 (5)
C4—C5—H5A110.0N4—C12—H12A111.0
C6—C5—H5A110.0C11—C12—H12A111.0
C4—C5—H5B110.0N4—C12—H12B111.0
C6—C5—H5B110.0C11—C12—H12B111.0
H5A—C5—H5B108.4H12A—C12—H12B109.0
C5—C6—N2104.9 (5)C2—N1—C1124.6 (5)
C5—C6—H6A110.8C2—N1—H1117.7
N2—C6—H6A110.8C1—N1—H1117.7
C5—C6—H6B110.8C2—N2—C3124.3 (5)
N2—C6—H6B110.8C2—N2—C6125.1 (4)
H6A—C6—H6B108.8C3—N2—C6110.6 (5)
N3—C7—H7A109.5C8—N3—C7123.9 (5)
N3—C7—H7B109.5C8—N3—H4118.0
H7A—C7—H7B109.5C7—N3—H4118.0
N3—C7—H7C109.5C8—N4—C12125.5 (4)
H7A—C7—H7C109.5C8—N4—C9123.2 (4)
H7B—C7—H7C109.5C12—N4—C9111.3 (4)
N2—C3—C4—C5−1.7 (10)C4—C3—N2—C6−4.0 (7)
C3—C4—C5—C66.6 (11)C5—C6—N2—C2−170.9 (6)
C4—C5—C6—N2−8.6 (8)C5—C6—N2—C37.8 (6)
N4—C9—C10—C11−15.4 (8)N4—C8—N3—C7179.3 (5)
C9—C10—C11—C1221.4 (10)S2—C8—N3—C7−1.0 (7)
C10—C11—C12—N4−17.9 (8)N3—C8—N4—C12−3.0 (7)
N2—C2—N1—C1179.6 (5)S2—C8—N4—C12177.3 (4)
S1—C2—N1—C1−0.3 (7)N3—C8—N4—C9178.1 (4)
N1—C2—N2—C3−179.7 (5)S2—C8—N4—C9−1.6 (6)
S1—C2—N2—C30.3 (7)C11—C12—N4—C8−170.9 (5)
N1—C2—N2—C6−1.1 (8)C11—C12—N4—C98.1 (6)
S1—C2—N2—C6178.8 (4)C10—C9—N4—C8−176.9 (5)
C4—C3—N2—C2174.7 (6)C10—C9—N4—C124.1 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···S2i0.862.733.472 (5)145
N3—H4···S1ii0.862.643.410 (5)150
C12—H12B···S1iii0.972.843.765 (5)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S2i0.862.733.472 (5)145
N3—H4⋯S1ii0.862.643.410 (5)150
C12—H12B⋯S1iii0.972.843.765 (5)159

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-Phenyl-pyrrolidine-1-carbothio-amide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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