| Literature DB >> 22719497 |
M Naveed Umar, M Nawaz Tahir, Mohammad Shoaib, Akbar Ali, Imran Khan.
Abstract
There are two independent mol-ecules in the asymmetric unit of the title compound, C(6)H(12)N(2)S, in which the N-methyl-thio-formamide unit and the pyrrolidine ring mean plane are oriented at dihedral angles of 5.9 (5) and 5.9 (4)°. In the crystal, zigzag C(4) chains extending along the a axis are formed due to N-H⋯S hydrogen bonds between alternate arrangements of mol-ecules. The chains are inter-linked by C-H⋯S hydrogen bonds.Entities:
Year: 2012 PMID: 22719497 PMCID: PMC3379299 DOI: 10.1107/S1600536812020971
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N2S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1204 reflections | |
| θ = 2.4–26.0° | |
| µ = 0.33 mm−1 | |
| α = 73.725 (14)° | |
| β = 86.656 (15)° | Prism, colorless |
| γ = 76.177 (16)° | 0.30 × 0.25 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2699 independent reflections |
| Radiation source: fine-focus sealed tube | 1385 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.10 pixels mm-1 | θmax = 25.0°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 9119 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2699 reflections | (Δ/σ)max < 0.001 |
| 165 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4239 (8) | 0.1340 (7) | 0.3083 (6) | 0.101 (2) | |
| H1A | 0.3186 | 0.1209 | 0.3350 | 0.151* | |
| H1B | 0.4965 | 0.0862 | 0.3803 | 0.151* | |
| H1C | 0.4586 | 0.0844 | 0.2406 | 0.151* | |
| C2 | 0.3360 (6) | 0.3972 (7) | 0.1594 (5) | 0.0699 (14) | |
| C3 | 0.2574 (7) | 0.6685 (8) | 0.0191 (5) | 0.0913 (18) | |
| H3A | 0.2961 | 0.6484 | −0.0622 | 0.110* | |
| H3B | 0.1437 | 0.6732 | 0.0248 | 0.110* | |
| C4 | 0.2906 (12) | 0.8143 (10) | 0.0304 (9) | 0.153 (3) | |
| H4A | 0.3452 | 0.8611 | −0.0463 | 0.184* | |
| H4B | 0.1906 | 0.8885 | 0.0365 | 0.184* | |
| C5 | 0.3868 (11) | 0.7860 (8) | 0.1411 (7) | 0.123 (3) | |
| H5A | 0.3265 | 0.8361 | 0.2030 | 0.148* | |
| H5B | 0.4801 | 0.8297 | 0.1166 | 0.148* | |
| C6 | 0.4365 (7) | 0.6143 (7) | 0.1987 (5) | 0.0846 (17) | |
| H6A | 0.4123 | 0.5869 | 0.2900 | 0.101* | |
| H6B | 0.5503 | 0.5764 | 0.1880 | 0.101* | |
| C7 | 0.0612 (8) | 0.8849 (7) | 0.7020 (6) | 0.0905 (18) | |
| H7A | 0.1661 | 0.8968 | 0.7156 | 0.136* | |
| H7B | −0.0082 | 0.9109 | 0.7695 | 0.136* | |
| H7C | 0.0199 | 0.9542 | 0.6202 | 0.136* | |
| C8 | 0.1664 (6) | 0.6492 (6) | 0.6253 (4) | 0.0668 (14) | |
| C9 | 0.2534 (7) | 0.4014 (7) | 0.5615 (5) | 0.0791 (15) | |
| H9A | 0.3672 | 0.3846 | 0.5754 | 0.095* | |
| H9B | 0.2292 | 0.4497 | 0.4704 | 0.095* | |
| C10 | 0.2012 (10) | 0.2515 (9) | 0.6076 (8) | 0.126 (3) | |
| H10A | 0.1297 | 0.2437 | 0.5447 | 0.151* | |
| H10B | 0.2930 | 0.1627 | 0.6193 | 0.151* | |
| C11 | 0.1210 (11) | 0.2487 (8) | 0.7269 (7) | 0.125 (3) | |
| H11A | 0.1933 | 0.1864 | 0.7980 | 0.150* | |
| H11B | 0.0307 | 0.2009 | 0.7314 | 0.150* | |
| C12 | 0.0651 (7) | 0.4120 (6) | 0.7365 (5) | 0.0768 (15) | |
| H12A | −0.0481 | 0.4515 | 0.7165 | 0.092* | |
| H12B | 0.0846 | 0.4183 | 0.8222 | 0.092* | |
| N1 | 0.4210 (5) | 0.2971 (5) | 0.2626 (4) | 0.0771 (13) | |
| H1 | 0.4775 | 0.3348 | 0.3037 | 0.093* | |
| N2 | 0.3437 (5) | 0.5463 (6) | 0.1280 (4) | 0.0739 (12) | |
| N3 | 0.0697 (5) | 0.7250 (5) | 0.7032 (4) | 0.0746 (12) | |
| H4 | 0.0100 | 0.6740 | 0.7564 | 0.089* | |
| N4 | 0.1603 (5) | 0.5002 (5) | 0.6404 (4) | 0.0677 (11) | |
| S1 | 0.22218 (19) | 0.3304 (2) | 0.07310 (14) | 0.0932 (6) | |
| S2 | 0.28575 (19) | 0.74016 (18) | 0.51593 (13) | 0.0881 (6) |
| C1 | 0.122 (5) | 0.099 (5) | 0.083 (4) | −0.026 (4) | −0.013 (4) | −0.024 (4) |
| C2 | 0.071 (3) | 0.102 (4) | 0.040 (3) | −0.018 (3) | 0.003 (2) | −0.027 (3) |
| C3 | 0.087 (4) | 0.116 (5) | 0.060 (3) | −0.020 (4) | −0.009 (3) | −0.007 (3) |
| C4 | 0.202 (10) | 0.116 (6) | 0.127 (7) | −0.046 (6) | −0.058 (7) | 0.007 (5) |
| C5 | 0.180 (8) | 0.100 (5) | 0.095 (5) | −0.040 (5) | −0.017 (5) | −0.025 (4) |
| C6 | 0.102 (4) | 0.107 (5) | 0.052 (3) | −0.030 (4) | −0.004 (3) | −0.027 (3) |
| C7 | 0.115 (5) | 0.085 (4) | 0.078 (4) | −0.024 (3) | 0.000 (3) | −0.032 (3) |
| C8 | 0.071 (3) | 0.088 (4) | 0.042 (3) | −0.018 (3) | −0.014 (2) | −0.016 (3) |
| C9 | 0.081 (4) | 0.100 (4) | 0.061 (3) | −0.013 (3) | −0.001 (3) | −0.035 (3) |
| C10 | 0.154 (7) | 0.104 (5) | 0.136 (7) | −0.036 (5) | 0.023 (6) | −0.061 (5) |
| C11 | 0.187 (8) | 0.088 (5) | 0.109 (6) | −0.044 (5) | 0.038 (5) | −0.036 (4) |
| C12 | 0.093 (4) | 0.096 (4) | 0.050 (3) | −0.038 (3) | 0.000 (3) | −0.021 (3) |
| N1 | 0.088 (3) | 0.093 (3) | 0.054 (3) | −0.023 (3) | −0.011 (2) | −0.022 (2) |
| N2 | 0.081 (3) | 0.098 (3) | 0.041 (2) | −0.020 (3) | −0.009 (2) | −0.017 (2) |
| N3 | 0.090 (3) | 0.086 (3) | 0.055 (3) | −0.031 (2) | 0.008 (2) | −0.023 (2) |
| N4 | 0.083 (3) | 0.080 (3) | 0.045 (2) | −0.021 (2) | −0.001 (2) | −0.023 (2) |
| S1 | 0.0962 (12) | 0.1408 (15) | 0.0594 (9) | −0.0374 (10) | −0.0056 (8) | −0.0447 (9) |
| S2 | 0.0935 (12) | 0.1108 (13) | 0.0601 (9) | −0.0357 (9) | 0.0018 (8) | −0.0135 (8) |
| C1—N1 | 1.418 (7) | C7—H7A | 0.9600 |
| C1—H1A | 0.9600 | C7—H7B | 0.9600 |
| C1—H1B | 0.9600 | C7—H7C | 0.9600 |
| C1—H1C | 0.9600 | C8—N4 | 1.330 (6) |
| C2—N2 | 1.316 (6) | C8—N3 | 1.358 (6) |
| C2—N1 | 1.346 (6) | C8—S2 | 1.688 (5) |
| C2—S1 | 1.705 (5) | C9—N4 | 1.475 (6) |
| C3—C4 | 1.457 (9) | C9—C10 | 1.480 (9) |
| C3—N2 | 1.464 (7) | C9—H9A | 0.9700 |
| C3—H3A | 0.9700 | C9—H9B | 0.9700 |
| C3—H3B | 0.9700 | C10—C11 | 1.422 (10) |
| C4—C5 | 1.423 (10) | C10—H10A | 0.9700 |
| C4—H4A | 0.9700 | C10—H10B | 0.9700 |
| C4—H4B | 0.9700 | C11—C12 | 1.476 (8) |
| C5—C6 | 1.473 (8) | C11—H11A | 0.9700 |
| C5—H5A | 0.9700 | C11—H11B | 0.9700 |
| C5—H5B | 0.9700 | C12—N4 | 1.462 (6) |
| C6—N2 | 1.474 (6) | C12—H12A | 0.9700 |
| C6—H6A | 0.9700 | C12—H12B | 0.9700 |
| C6—H6B | 0.9700 | N1—H1 | 0.8600 |
| C7—N3 | 1.432 (6) | N3—H4 | 0.8600 |
| N1—C1—H1A | 109.5 | N4—C8—N3 | 115.8 (5) |
| N1—C1—H1B | 109.5 | N4—C8—S2 | 122.6 (4) |
| H1A—C1—H1B | 109.5 | N3—C8—S2 | 121.6 (4) |
| N1—C1—H1C | 109.5 | N4—C9—C10 | 103.7 (5) |
| H1A—C1—H1C | 109.5 | N4—C9—H9A | 111.0 |
| H1B—C1—H1C | 109.5 | C10—C9—H9A | 111.0 |
| N2—C2—N1 | 118.2 (4) | N4—C9—H9B | 111.0 |
| N2—C2—S1 | 121.6 (4) | C10—C9—H9B | 111.0 |
| N1—C2—S1 | 120.2 (4) | H9A—C9—H9B | 109.0 |
| C4—C3—N2 | 104.4 (5) | C11—C10—C9 | 108.4 (6) |
| C4—C3—H3A | 110.9 | C11—C10—H10A | 110.0 |
| N2—C3—H3A | 110.9 | C9—C10—H10A | 110.0 |
| C4—C3—H3B | 110.9 | C11—C10—H10B | 110.0 |
| N2—C3—H3B | 110.9 | C9—C10—H10B | 110.0 |
| H3A—C3—H3B | 108.9 | H10A—C10—H10B | 108.4 |
| C5—C4—C3 | 111.2 (6) | C10—C11—C12 | 108.9 (6) |
| C5—C4—H4A | 109.4 | C10—C11—H11A | 109.9 |
| C3—C4—H4A | 109.4 | C12—C11—H11A | 109.9 |
| C5—C4—H4B | 109.4 | C10—C11—H11B | 109.9 |
| C3—C4—H4B | 109.4 | C12—C11—H11B | 109.9 |
| H4A—C4—H4B | 108.0 | H11A—C11—H11B | 108.3 |
| C4—C5—C6 | 108.3 (6) | N4—C12—C11 | 103.6 (5) |
| C4—C5—H5A | 110.0 | N4—C12—H12A | 111.0 |
| C6—C5—H5A | 110.0 | C11—C12—H12A | 111.0 |
| C4—C5—H5B | 110.0 | N4—C12—H12B | 111.0 |
| C6—C5—H5B | 110.0 | C11—C12—H12B | 111.0 |
| H5A—C5—H5B | 108.4 | H12A—C12—H12B | 109.0 |
| C5—C6—N2 | 104.9 (5) | C2—N1—C1 | 124.6 (5) |
| C5—C6—H6A | 110.8 | C2—N1—H1 | 117.7 |
| N2—C6—H6A | 110.8 | C1—N1—H1 | 117.7 |
| C5—C6—H6B | 110.8 | C2—N2—C3 | 124.3 (5) |
| N2—C6—H6B | 110.8 | C2—N2—C6 | 125.1 (4) |
| H6A—C6—H6B | 108.8 | C3—N2—C6 | 110.6 (5) |
| N3—C7—H7A | 109.5 | C8—N3—C7 | 123.9 (5) |
| N3—C7—H7B | 109.5 | C8—N3—H4 | 118.0 |
| H7A—C7—H7B | 109.5 | C7—N3—H4 | 118.0 |
| N3—C7—H7C | 109.5 | C8—N4—C12 | 125.5 (4) |
| H7A—C7—H7C | 109.5 | C8—N4—C9 | 123.2 (4) |
| H7B—C7—H7C | 109.5 | C12—N4—C9 | 111.3 (4) |
| N2—C3—C4—C5 | −1.7 (10) | C4—C3—N2—C6 | −4.0 (7) |
| C3—C4—C5—C6 | 6.6 (11) | C5—C6—N2—C2 | −170.9 (6) |
| C4—C5—C6—N2 | −8.6 (8) | C5—C6—N2—C3 | 7.8 (6) |
| N4—C9—C10—C11 | −15.4 (8) | N4—C8—N3—C7 | 179.3 (5) |
| C9—C10—C11—C12 | 21.4 (10) | S2—C8—N3—C7 | −1.0 (7) |
| C10—C11—C12—N4 | −17.9 (8) | N3—C8—N4—C12 | −3.0 (7) |
| N2—C2—N1—C1 | 179.6 (5) | S2—C8—N4—C12 | 177.3 (4) |
| S1—C2—N1—C1 | −0.3 (7) | N3—C8—N4—C9 | 178.1 (4) |
| N1—C2—N2—C3 | −179.7 (5) | S2—C8—N4—C9 | −1.6 (6) |
| S1—C2—N2—C3 | 0.3 (7) | C11—C12—N4—C8 | −170.9 (5) |
| N1—C2—N2—C6 | −1.1 (8) | C11—C12—N4—C9 | 8.1 (6) |
| S1—C2—N2—C6 | 178.8 (4) | C10—C9—N4—C8 | −176.9 (5) |
| C4—C3—N2—C2 | 174.7 (6) | C10—C9—N4—C12 | 4.1 (6) |
| H··· | ||||
| N1—H1···S2i | 0.86 | 2.73 | 3.472 (5) | 145 |
| N3—H4···S1ii | 0.86 | 2.64 | 3.410 (5) | 150 |
| C12—H12 | 0.97 | 2.84 | 3.765 (5) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯S2i | 0.86 | 2.73 | 3.472 (5) | 145 |
| N3—H4⋯S1ii | 0.86 | 2.64 | 3.410 (5) | 150 |
| C12—H12 | 0.97 | 2.84 | 3.765 (5) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) .