Literature DB >> 22719491

2,17-Dichloro-8,9,10,11-tetra-hydro-19H-dibenzo[k,n][1,10,4,7]dioxadiaza-cyclo-penta-decine-7,12(6H,13H)-dione.

Michaela Pojarová, Michal Dušek, Zdeňka Sedláková, Emanuel Makrlík.   

Abstract

In the crystal structure of the title compound, C(19)H(18)Cl(2)N(2)O(4), N-H⋯O hydrogen bonds link the mol-ecules into infinite chains along the b axis. The structure also features weak C-H⋯O and C-H⋯Cl hydrogen bonds and C-H⋯π and (lone pair)⋯π inter-actions [Cl⋯centroid = 3.5871 (7) Å]. An intra-molecular N-H⋯O bond occurs.

Entities:  

Year:  2012        PMID: 22719491      PMCID: PMC3379293          DOI: 10.1107/S1600536812020351

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Ertul et al. (2009 ▶). For applications of macrocycles, see: Hayvali & Hayvali (2005 ▶); Kleinpeter et al. (1997 ▶); Jaiyu et al. (2007 ▶); Christensen et al. (1997 ▶); Alexander (1995 ▶).

Experimental

Crystal data

C19H18Cl2N2O4 M = 409.25 Monoclinic, a = 12.0877 (3) Å b = 8.73462 (15) Å c = 17.3712 (4) Å β = 93.588 (2)° V = 1830.48 (7) Å3 Z = 4 Cu Kα radiation μ = 3.44 mm−1 T = 120 K 0.31 × 0.22 × 0.21 mm

Data collection

Agilent Xcalibur Atlas Gemini ultra diffractometer Absorption correction: analytical (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.175, T max = 0.342 19596 measured reflections 3271 independent reflections 3210 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.074 S = 1.07 3271 reflections 244 parameters 2 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020351/aa2058sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020351/aa2058Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18Cl2N2O4F(000) = 848
Mr = 409.25Dx = 1.484 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 16650 reflections
a = 12.0877 (3) Åθ = 3.7–67.1°
b = 8.73462 (15) ŵ = 3.44 mm1
c = 17.3712 (4) ÅT = 120 K
β = 93.588 (2)°Prism, colourless
V = 1830.48 (7) Å30.31 × 0.22 × 0.21 mm
Z = 4
Agilent Xcalibur Atlas Gemini ultra diffractometer3271 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source3210 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.028
Detector resolution: 10.3784 pixels mm-1θmax = 67.1°, θmin = 3.7°
Rotation method data acquisition using ω scansh = −14→14
Absorption correction: analytical (CrysAlis PRO; Agilent, 2010)k = −8→10
Tmin = 0.175, Tmax = 0.342l = −20→20
19596 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0376P)2 + 0.7612P] where P = (Fo2 + 2Fc2)/3
3271 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.20 e Å3
2 restraintsΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The H atoms were all located in a difference map, but those attached to carbon atoms were repositioned geometrically. The distance between hydrogen atoms and nitrogen atoms was restrained. The bond length was set to 0.87 Å with σ 0.02. The isotropic temperature parameters of hydrogen atoms were calculated as 1.2*Ueq of the parent atom.
xyzUiso*/Ueq
Cl10.86335 (3)1.01411 (4)0.16078 (2)0.03147 (11)
Cl21.00225 (3)0.24819 (5)−0.01843 (2)0.03989 (12)
O40.78538 (8)0.52610 (11)0.38371 (5)0.0251 (2)
O10.64125 (7)0.49162 (11)0.15585 (5)0.0248 (2)
O30.58083 (8)0.72265 (11)0.47012 (6)0.0306 (2)
O20.39104 (8)0.69986 (11)0.15386 (6)0.0291 (2)
N20.55581 (9)0.49941 (13)0.40482 (6)0.0247 (2)
H1N20.59040.41320.39230.030*
C190.74034 (11)0.56132 (16)0.45584 (8)0.0262 (3)
H19A0.78090.64630.47990.031*
H19B0.74900.47360.48990.031*
C30.79942 (11)0.91308 (16)0.29832 (8)0.0269 (3)
H30.78801.01540.31020.032*
C50.84978 (11)0.71987 (16)0.20783 (8)0.0241 (3)
H50.87320.69510.15940.029*
C110.79350 (12)0.34870 (16)−0.00686 (8)0.0276 (3)
H110.78340.3274−0.05930.033*
C80.82559 (11)0.40890 (14)0.15178 (8)0.0222 (3)
C10.79727 (10)0.64599 (15)0.33323 (8)0.0230 (3)
C60.82934 (10)0.60427 (15)0.25987 (8)0.0223 (3)
C70.83966 (11)0.43695 (15)0.23779 (8)0.0237 (3)
H7A0.91190.39980.25670.028*
H7B0.78420.37840.26310.028*
C130.72294 (11)0.43609 (15)0.11165 (8)0.0228 (3)
C90.91159 (11)0.35413 (15)0.11042 (8)0.0248 (3)
H90.98090.33740.13520.030*
C120.70686 (11)0.40584 (16)0.03341 (8)0.0268 (3)
H120.63810.42380.00790.032*
N10.49166 (10)0.57462 (14)0.24811 (7)0.0271 (3)
H1N10.55600.52680.26000.033*
C150.46922 (10)0.61525 (15)0.17506 (8)0.0230 (3)
C140.54225 (11)0.54793 (16)0.11649 (8)0.0242 (3)
H14A0.50380.46520.08890.029*
H14B0.56040.62560.07940.029*
C180.61793 (11)0.60295 (15)0.44482 (7)0.0242 (3)
C20.78030 (11)0.79873 (16)0.35175 (8)0.0263 (3)
H20.75620.82450.39990.032*
C40.83550 (11)0.87211 (16)0.22751 (8)0.0250 (3)
C170.44063 (11)0.52947 (16)0.38020 (8)0.0270 (3)
H17A0.40340.57490.42250.032*
H17B0.40380.43370.36660.032*
C100.89470 (11)0.32410 (16)0.03211 (8)0.0268 (3)
C160.43191 (11)0.63655 (16)0.31133 (8)0.0276 (3)
H16A0.35460.65060.29450.033*
H16B0.46240.73570.32620.033*
U11U22U33U12U13U23
Cl10.0375 (2)0.02398 (18)0.0333 (2)−0.00168 (13)0.00512 (14)0.00670 (13)
Cl20.0333 (2)0.0531 (2)0.0343 (2)0.01109 (16)0.00956 (15)−0.00592 (16)
O40.0283 (5)0.0241 (5)0.0232 (5)0.0001 (4)0.0043 (4)0.0026 (4)
O10.0209 (5)0.0307 (5)0.0227 (5)0.0044 (4)0.0010 (4)0.0008 (4)
O30.0355 (5)0.0277 (5)0.0291 (5)0.0002 (4)0.0056 (4)−0.0042 (4)
O20.0259 (5)0.0293 (5)0.0323 (5)0.0061 (4)0.0027 (4)0.0076 (4)
N20.0253 (6)0.0234 (6)0.0255 (6)0.0011 (4)0.0013 (5)0.0001 (4)
C190.0294 (7)0.0287 (7)0.0205 (6)−0.0023 (6)0.0020 (5)0.0012 (5)
C30.0283 (7)0.0210 (7)0.0313 (7)0.0004 (5)0.0005 (5)−0.0014 (5)
C50.0233 (6)0.0260 (7)0.0232 (6)−0.0011 (5)0.0025 (5)0.0002 (5)
C110.0333 (7)0.0268 (7)0.0227 (7)0.0004 (6)0.0034 (5)0.0003 (5)
C80.0246 (6)0.0161 (6)0.0258 (7)−0.0012 (5)0.0014 (5)0.0019 (5)
C10.0198 (6)0.0244 (7)0.0245 (6)−0.0019 (5)−0.0006 (5)0.0030 (5)
C60.0181 (6)0.0226 (6)0.0259 (7)−0.0004 (5)−0.0008 (5)0.0004 (5)
C70.0239 (6)0.0224 (6)0.0248 (7)0.0012 (5)0.0004 (5)0.0013 (5)
C130.0235 (6)0.0201 (6)0.0251 (7)0.0004 (5)0.0041 (5)0.0011 (5)
C90.0231 (6)0.0213 (6)0.0299 (7)−0.0002 (5)0.0015 (5)0.0019 (5)
C120.0257 (7)0.0284 (7)0.0261 (7)0.0022 (5)−0.0001 (5)0.0016 (5)
N10.0258 (6)0.0309 (6)0.0247 (6)0.0087 (5)0.0016 (4)0.0007 (5)
C150.0211 (6)0.0195 (6)0.0283 (7)−0.0029 (5)0.0007 (5)0.0018 (5)
C140.0222 (6)0.0256 (7)0.0244 (7)0.0016 (5)−0.0008 (5)0.0036 (5)
C180.0301 (7)0.0246 (7)0.0183 (6)−0.0015 (5)0.0042 (5)0.0030 (5)
C20.0267 (7)0.0278 (7)0.0248 (7)0.0005 (5)0.0034 (5)−0.0028 (6)
C40.0240 (6)0.0231 (7)0.0278 (7)−0.0014 (5)0.0001 (5)0.0045 (5)
C170.0244 (7)0.0300 (7)0.0268 (7)−0.0005 (5)0.0031 (5)0.0003 (6)
C100.0279 (7)0.0237 (7)0.0295 (7)0.0020 (5)0.0082 (5)0.0001 (5)
C160.0277 (7)0.0292 (7)0.0262 (7)0.0057 (6)0.0030 (5)−0.0006 (6)
Cl1—C41.7451 (14)C8—C131.4050 (18)
Cl2—C101.7448 (14)C8—C71.5132 (18)
O4—C11.3794 (16)C1—C21.391 (2)
O4—C191.4306 (16)C1—C61.4031 (19)
O1—C131.3766 (16)C6—C71.5185 (19)
O1—C141.4282 (15)C7—H7A0.9700
O3—C181.2300 (17)C7—H7B0.9700
O2—C151.2377 (16)C13—C121.3864 (19)
N2—C181.3417 (18)C9—C101.388 (2)
N2—C171.4548 (17)C9—H90.9300
N2—H1N20.8948C12—H120.9300
C19—C181.5243 (19)N1—C151.3292 (18)
C19—H19A0.9700N1—C161.4560 (18)
C19—H19B0.9700N1—H1N10.8962
C3—C41.378 (2)C15—C141.5077 (19)
C3—C21.393 (2)C14—H14A0.9700
C3—H30.9300C14—H14B0.9700
C5—C61.3880 (19)C2—H20.9300
C5—C41.387 (2)C17—C161.5171 (19)
C5—H50.9300C17—H17A0.9700
C11—C101.377 (2)C17—H17B0.9700
C11—C121.388 (2)C16—H16A0.9700
C11—H110.9300C16—H16B0.9700
C8—C91.3856 (19)
C1—O4—C19117.00 (10)C10—C9—H9119.9
C13—O1—C14117.60 (10)C13—C12—C11119.91 (13)
C18—N2—C17121.67 (12)C13—C12—H12120.0
C18—N2—H1N2116.0C11—C12—H12120.0
C17—N2—H1N2122.3C15—N1—C16122.65 (11)
O4—C19—C18111.17 (10)C15—N1—H1N1117.8
O4—C19—H19A109.4C16—N1—H1N1117.7
C18—C19—H19A109.4O2—C15—N1123.36 (12)
O4—C19—H19B109.4O2—C15—C14120.06 (12)
C18—C19—H19B109.4N1—C15—C14116.55 (11)
H19A—C19—H19B108.0O1—C14—C15108.66 (10)
C4—C3—C2118.92 (13)O1—C14—H14A110.0
C4—C3—H3120.5C15—C14—H14A110.0
C2—C3—H3120.5O1—C14—H14B110.0
C6—C5—C4120.49 (13)C15—C14—H14B110.0
C6—C5—H5119.8H14A—C14—H14B108.3
C4—C5—H5119.8O3—C18—N2123.61 (13)
C10—C11—C12118.92 (13)O3—C18—C19122.07 (12)
C10—C11—H11120.5N2—C18—C19114.31 (12)
C12—C11—H11120.5C1—C2—C3120.07 (13)
C9—C8—C13118.00 (12)C1—C2—H2120.0
C9—C8—C7121.76 (12)C3—C2—H2120.0
C13—C8—C7120.24 (12)C3—C4—C5121.37 (12)
O4—C1—C2123.97 (12)C3—C4—Cl1119.56 (11)
O4—C1—C6115.20 (12)C5—C4—Cl1119.08 (11)
C2—C1—C6120.83 (12)N2—C17—C16111.17 (11)
C5—C6—C1118.23 (12)N2—C17—H17A109.4
C5—C6—C7121.01 (12)C16—C17—H17A109.4
C1—C6—C7120.75 (12)N2—C17—H17B109.4
C8—C7—C6113.54 (11)C16—C17—H17B109.4
C8—C7—H7A108.9H17A—C17—H17B108.0
C6—C7—H7A108.9C11—C10—C9121.58 (13)
C8—C7—H7B108.9C11—C10—Cl2118.62 (11)
C6—C7—H7B108.9C9—C10—Cl2119.77 (11)
H7A—C7—H7B107.7N1—C16—C17110.63 (11)
O1—C13—C12123.54 (12)N1—C16—H16A109.5
O1—C13—C8115.16 (11)C17—C16—H16A109.5
C12—C13—C8121.29 (12)N1—C16—H16B109.5
C8—C9—C10120.29 (12)C17—C16—H16B109.5
C8—C9—H9119.9H16A—C16—H16B108.1
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O2i0.892.052.8945 (15)158
C14—H14A···O3i0.972.543.5026 (17)172
C14—H14B···O3ii0.972.343.2934 (17)167
C16—H16B···O1iii0.972.593.2843 (17)129
C19—H19A···Cl2iv0.972.813.6201 (14)142
C9—H9···Cg1v0.932.883.8006 (14)174
N1—H1N1···O10.902.162.5935 (15)109
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O2i0.892.052.8945 (15)158
C14—H14A⋯O3i0.972.543.5026 (17)172
C14—H14B⋯O3ii0.972.343.2934 (17)167
C16—H16B⋯O1iii0.972.593.2843 (17)129
C19—H19A⋯Cl2iv0.972.813.6201 (14)142
C9—H9⋯Cg1v0.932.883.8006 (14)174
N1—H1N1⋯O10.902.162.5935 (15)109

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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