Literature DB >> 22719490

2-tert-Butyl 4-methyl 3,5-dimethyl-1H-pyrrole-2,4-dicarboxyl-ate.

Hong-Xin Cai1, Zhao-Po Zhang.   

Abstract

In the title mol-ecule, C(13)H(19)NO(4), except for two C atoms of the tert-butyl group, the non-H atoms are almost coplanar (r.m.s. deviation = 0.2542 Å). In the crystal, mol-ecules are linked into centrosymmetric dimers by two inter-molecular N-H⋯O hydrogen bonds, forming an R(2) (2)(10) ring motif.

Entities:  

Year:  2012        PMID: 22719490      PMCID: PMC3379292          DOI: 10.1107/S1600536812020120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For complexes of Schiff bases containing a pyrrole unit, see: Wu et al. (2003 ▶); Wang et al. (2008 ▶). For the synthesis of the title compound, see: Sun et al. (2003 ▶).

Experimental

Crystal data

C13H19NO4 M = 253.29 Monoclinic, a = 11.788 (4) Å b = 17.045 (6) Å c = 7.229 (2) Å β = 106.420 (7)° V = 1393.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.19 × 0.18 × 0.16 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.983, T max = 0.986 7149 measured reflections 2458 independent reflections 1334 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.250 S = 1.02 2458 reflections 163 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020120/vm2170sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020120/vm2170Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020120/vm2170Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19NO4F(000) = 544
Mr = 253.29Dx = 1.208 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1135 reflections
a = 11.788 (4) Åθ = 3.0–21.5°
b = 17.045 (6) ŵ = 0.09 mm1
c = 7.229 (2) ÅT = 296 K
β = 106.420 (7)°Plate, colorless
V = 1393.2 (8) Å30.19 × 0.18 × 0.16 mm
Z = 4
Bruker SMART CCD diffractometer2458 independent reflections
Radiation source: fine-focus sealed tube1334 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.050
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −13→14
Tmin = 0.983, Tmax = 0.986k = −19→20
7149 measured reflectionsl = −8→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.250H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.1445P)2] where P = (Fo2 + 2Fc2)/3
2458 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.1539 (4)0.4652 (3)1.0373 (8)0.1274 (19)
H1B1.09610.50631.01930.191*
H1C1.19530.46960.94090.191*
H1D1.20910.46991.16300.191*
C21.1615 (3)0.3246 (2)1.0408 (5)0.0768 (11)
C31.0936 (3)0.25230 (19)1.0199 (4)0.0587 (9)
C40.9687 (3)0.24090 (18)0.9753 (4)0.0554 (8)
C50.9521 (2)0.16057 (19)0.9724 (4)0.0586 (9)
C61.1478 (3)0.1795 (2)1.0403 (5)0.0657 (9)
C70.8755 (3)0.30226 (19)0.9401 (5)0.0692 (10)
H7A0.79920.27780.91380.104*
H7B0.87880.33370.83150.104*
H7C0.88810.33501.05210.104*
C81.2746 (3)0.1548 (3)1.0879 (7)0.0978 (14)
H8A1.27920.09861.08970.147*
H8B1.31670.17501.21230.147*
H8C1.30920.17500.99230.147*
C90.8486 (3)0.1108 (2)0.9370 (5)0.0632 (9)
C100.6297 (3)0.1201 (2)0.8529 (6)0.0735 (11)
C110.6041 (4)0.0676 (3)0.6820 (8)0.131 (2)
H11A0.65400.02220.71160.197*
H11B0.61890.09520.57530.197*
H11C0.52270.05170.64880.197*
C120.6181 (4)0.0814 (3)1.0336 (7)0.1063 (15)
H12A0.66570.03481.05840.159*
H12B0.53680.06771.01750.159*
H12C0.64430.11691.14030.159*
C130.5522 (3)0.1940 (3)0.8125 (8)0.1084 (16)
H13A0.56970.22610.92610.163*
H13B0.47030.17900.77760.163*
H13C0.56800.22290.70860.163*
O11.0949 (2)0.38906 (15)1.0199 (4)0.0925 (9)
O21.2657 (3)0.32986 (18)1.0728 (6)0.1295 (13)
O30.74888 (17)0.15373 (14)0.8891 (3)0.0713 (8)
O40.85058 (19)0.03974 (15)0.9488 (4)0.0876 (9)
N11.0615 (2)0.12471 (17)1.0127 (4)0.0674 (8)
H1A1.07300.07481.01920.081*
U11U22U33U12U13U23
C10.101 (3)0.078 (3)0.197 (6)−0.040 (3)0.032 (3)−0.010 (3)
C20.053 (2)0.083 (3)0.088 (3)−0.0142 (19)0.0105 (18)0.0009 (19)
C30.0448 (18)0.064 (2)0.066 (2)−0.0079 (15)0.0136 (14)0.0011 (15)
C40.0457 (17)0.063 (2)0.0539 (18)−0.0049 (14)0.0090 (13)−0.0018 (14)
C50.0379 (16)0.070 (2)0.064 (2)−0.0014 (14)0.0084 (13)−0.0017 (16)
C60.0442 (18)0.078 (2)0.074 (2)−0.0119 (16)0.0149 (15)−0.0050 (16)
C70.0512 (19)0.060 (2)0.091 (2)0.0005 (16)0.0119 (17)0.0041 (17)
C80.043 (2)0.099 (3)0.146 (4)0.005 (2)0.019 (2)−0.001 (3)
C90.0475 (19)0.058 (2)0.083 (2)−0.0048 (15)0.0169 (16)−0.0033 (17)
C100.0416 (18)0.074 (2)0.102 (3)−0.0111 (16)0.0146 (17)−0.009 (2)
C110.067 (3)0.164 (5)0.141 (4)−0.010 (3)−0.005 (3)−0.062 (4)
C120.075 (3)0.098 (3)0.152 (4)−0.020 (2)0.041 (3)0.009 (3)
C130.050 (2)0.110 (4)0.159 (4)0.008 (2)0.018 (2)0.002 (3)
O10.0673 (17)0.0635 (16)0.145 (3)−0.0193 (14)0.0268 (16)−0.0068 (15)
O20.0530 (18)0.103 (2)0.215 (4)−0.0239 (15)0.0100 (19)0.007 (2)
O30.0359 (12)0.0687 (15)0.1046 (19)−0.0050 (10)0.0120 (11)0.0016 (12)
O40.0523 (14)0.0607 (17)0.144 (2)−0.0030 (11)0.0180 (14)−0.0099 (14)
N10.0442 (15)0.0624 (16)0.093 (2)−0.0020 (13)0.0149 (13)−0.0030 (14)
C1—O11.461 (5)C8—H8B0.9600
C1—H1B0.9600C8—H8C0.9600
C1—H1C0.9600C9—O41.215 (4)
C1—H1D0.9600C9—O31.344 (4)
C2—O21.188 (4)C10—O31.470 (4)
C2—O11.334 (4)C10—C111.486 (6)
C2—C31.454 (5)C10—C121.504 (6)
C3—C61.385 (5)C10—C131.534 (5)
C3—C41.429 (4)C11—H11A0.9600
C4—C51.383 (4)C11—H11B0.9600
C4—C71.486 (4)C11—H11C0.9600
C5—N11.382 (4)C12—H12A0.9600
C5—C91.448 (4)C12—H12B0.9600
C6—N11.354 (4)C12—H12C0.9600
C6—C81.496 (5)C13—H13A0.9600
C7—H7A0.9600C13—H13B0.9600
C7—H7B0.9600C13—H13C0.9600
C7—H7C0.9600N1—H1A0.8600
C8—H8A0.9600
O1—C1—H1B109.5O4—C9—O3124.0 (3)
O1—C1—H1C109.5O4—C9—C5125.0 (3)
H1B—C1—H1C109.5O3—C9—C5111.0 (3)
O1—C1—H1D109.5O3—C10—C11110.0 (3)
H1B—C1—H1D109.5O3—C10—C12109.5 (3)
H1C—C1—H1D109.5C11—C10—C12114.2 (4)
O2—C2—O1120.2 (4)O3—C10—C13101.7 (3)
O2—C2—C3126.4 (4)C11—C10—C13111.4 (4)
O1—C2—C3113.4 (3)C12—C10—C13109.3 (3)
C6—C3—C4108.5 (3)C10—C11—H11A109.5
C6—C3—C2121.7 (3)C10—C11—H11B109.5
C4—C3—C2129.8 (3)H11A—C11—H11B109.5
C5—C4—C3105.7 (3)C10—C11—H11C109.5
C5—C4—C7126.9 (3)H11A—C11—H11C109.5
C3—C4—C7127.4 (3)H11B—C11—H11C109.5
N1—C5—C4108.4 (3)C10—C12—H12A109.5
N1—C5—C9117.9 (3)C10—C12—H12B109.5
C4—C5—C9133.7 (3)H12A—C12—H12B109.5
N1—C6—C3107.3 (3)C10—C12—H12C109.5
N1—C6—C8120.0 (3)H12A—C12—H12C109.5
C3—C6—C8132.6 (3)H12B—C12—H12C109.5
C4—C7—H7A109.5C10—C13—H13A109.5
C4—C7—H7B109.5C10—C13—H13B109.5
H7A—C7—H7B109.5H13A—C13—H13B109.5
C4—C7—H7C109.5C10—C13—H13C109.5
H7A—C7—H7C109.5H13A—C13—H13C109.5
H7B—C7—H7C109.5H13B—C13—H13C109.5
C6—C8—H8A109.5C2—O1—C1118.1 (3)
C6—C8—H8B109.5C9—O3—C10123.8 (3)
H8A—C8—H8B109.5C6—N1—C5110.1 (3)
C6—C8—H8C109.5C6—N1—H1A124.9
H8A—C8—H8C109.5C5—N1—H1A124.9
H8B—C8—H8C109.5
O2—C2—C3—C61.3 (6)N1—C5—C9—O43.7 (5)
O1—C2—C3—C6−178.8 (3)C4—C5—C9—O4−176.5 (4)
O2—C2—C3—C4−177.7 (4)N1—C5—C9—O3−176.4 (3)
O1—C2—C3—C42.2 (5)C4—C5—C9—O33.4 (5)
C6—C3—C4—C50.6 (4)O2—C2—O1—C10.1 (6)
C2—C3—C4—C5179.7 (3)C3—C2—O1—C1−179.8 (3)
C6—C3—C4—C7−179.6 (3)O4—C9—O3—C102.7 (5)
C2—C3—C4—C7−0.6 (6)C5—C9—O3—C10−177.2 (3)
C3—C4—C5—N1−0.2 (3)C11—C10—O3—C9−63.7 (5)
C7—C4—C5—N1−179.9 (3)C12—C10—O3—C962.6 (4)
C3—C4—C5—C9180.0 (3)C13—C10—O3—C9178.1 (3)
C7—C4—C5—C90.2 (6)C3—C6—N1—C50.7 (4)
C4—C3—C6—N1−0.8 (4)C8—C6—N1—C5179.4 (3)
C2—C3—C6—N1−180.0 (3)C4—C5—N1—C6−0.4 (4)
C4—C3—C6—C8−179.3 (4)C9—C5—N1—C6179.5 (3)
C2—C3—C6—C81.5 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.862.142.974 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.862.142.974 (4)165

Symmetry code: (i) .

  4 in total

1.  Double-stranded helicates, triangles, and squares formed by the self-assembly of pyrrol-2-ylmethyleneamines and ZnII ions.

Authors:  Zhikun Wu; Qingqi Chen; Shaoxiang Xiong; Bin Xin; Zhenwen Zhao; Lijin Jiang; Jin Shi Ma
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-21       Impact factor: 15.336

2.  Discovery of 5-[5-fluoro-2-oxo-1,2- dihydroindol-(3Z)-ylidenemethyl]-2,4- dimethyl-1H-pyrrole-3-carboxylic acid (2-diethylaminoethyl)amide, a novel tyrosine kinase inhibitor targeting vascular endothelial and platelet-derived growth factor receptor tyrosine kinase.

Authors:  Li Sun; Chris Liang; Sheri Shirazian; Yong Zhou; Todd Miller; Jean Cui; Juri Y Fukuda; Ji-Yu Chu; Asaad Nematalla; Xueyan Wang; Hui Chen; Anand Sistla; Tony C Luu; Flora Tang; James Wei; Cho Tang
Journal:  J Med Chem       Date:  2003-03-27       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis, characterization and DNA-binding properties of four Zn(II) complexes with bis(pyrrol-2-yl-methyleneamine) ligands.

Authors:  Yuan Wang; Zheng-Yin Yang; Zhong-Ning Chen
Journal:  Bioorg Med Chem Lett       Date:  2007-10-30       Impact factor: 2.823

  4 in total

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