Literature DB >> 22719485

(1S*,5R*)-9-Phenyl-9-aza-bicyclo-[3.3.1]nonan-3-one.

Zhen-Ju Jiang, Qi He, Zhen Li, Zhou-Yu Wang.   

Abstract

In the title compound, C(14)H(17)NO, the piperidinone and piperidine rings both adopt a chair conformation. The chiral crystals were obtained from a racemic reaction product via spontaneous resolution.

Entities:  

Year:  2012        PMID: 22719485      PMCID: PMC3379287          DOI: 10.1107/S1600536812020065

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Zhang (2003 ▶). For applications of the compound, see: Vernekar et al. (2010 ▶); Lazny et al. (2011 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H17NO M = 215.29 Orthorhombic, a = 9.4028 (3) Å b = 10.2524 (5) Å c = 12.0473 (6) Å V = 1161.38 (9) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.40 × 0.40 × 0.35 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (ABSPACK in CrysAlis PRO; Agilent, 2011 ▶) T min = 0.918, T max = 1.000 3285 measured reflections 2218 independent reflections 1722 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.092 S = 1.02 2218 reflections 145 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020065/fy2049sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020065/fy2049Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812020065/fy2049Isup4.cdx Supplementary material file. DOI: 10.1107/S1600536812020065/fy2049Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17NODx = 1.231 Mg m3
Mr = 215.29Mo Kα radiation, λ = 0.7107 Å
Orthorhombic, P212121Cell parameters from 1237 reflections
a = 9.4028 (3) Åθ = 2.9–29.0°
b = 10.2524 (5) ŵ = 0.08 mm1
c = 12.0473 (6) ÅT = 293 K
V = 1161.38 (9) Å3Block, colourless
Z = 40.40 × 0.40 × 0.35 mm
F(000) = 464
Agilent Xcalibur Eos diffractometer2218 independent reflections
Radiation source: Enhance (Mo) X-ray Source1722 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 2.9°
ω scansh = −11→7
Absorption correction: multi-scan (ABSPACK in CrysAlis PRO; Agilent, 2011)k = −9→12
Tmin = 0.918, Tmax = 1.000l = −8→15
3285 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0394P)2] where P = (Fo2 + 2Fc2)/3
2218 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.58709 (17)−0.01586 (16)−0.68342 (15)0.0838 (6)
N1−0.19284 (14)−0.18245 (14)−0.65084 (12)0.0368 (4)
C1−0.31907 (18)−0.26416 (18)−0.63463 (16)0.0409 (5)
H1−0.2985−0.3506−0.66530.049*
C2−0.4480 (2)−0.20832 (19)−0.69713 (16)0.0472 (5)
H2A−0.4367−0.2265−0.77570.057*
H2B−0.5329−0.2532−0.67210.057*
C3−0.4692 (2)−0.0642 (2)−0.68231 (16)0.0510 (6)
C4−0.3376 (2)0.01633 (18)−0.67070 (17)0.0489 (5)
H4A−0.36180.0971−0.63320.059*
H4B−0.30320.0386−0.74420.059*
C5−0.2173 (2)−0.05077 (18)−0.60634 (17)0.0412 (5)
H5−0.13020.0001−0.61740.049*
C6−0.2468 (2)−0.0573 (2)−0.48223 (17)0.0494 (5)
H6A−0.1612−0.0854−0.44420.059*
H6B−0.27030.0293−0.45560.059*
C7−0.3672 (2)−0.1497 (2)−0.45334 (16)0.0522 (6)
H7A−0.3705−0.1626−0.37360.063*
H7B−0.4571−0.1122−0.47660.063*
C8−0.3452 (2)−0.2797 (2)−0.51068 (17)0.0510 (5)
H8A−0.4286−0.3338−0.49940.061*
H8B−0.2646−0.3239−0.47740.061*
C9−0.11420 (18)−0.19480 (18)−0.75009 (15)0.0363 (4)
C10−0.1472 (2)−0.28634 (19)−0.83142 (16)0.0435 (5)
H10−0.2261−0.3400−0.82210.052*
C11−0.0647 (2)−0.2989 (2)−0.92593 (16)0.0537 (6)
H11−0.0896−0.3602−0.97940.064*
C120.0534 (2)−0.2223 (2)−0.94206 (16)0.0597 (6)
H120.1084−0.2308−1.00580.072*
C130.0880 (2)−0.1329 (2)−0.8617 (2)0.0605 (6)
H130.1680−0.0807−0.87120.073*
C140.0069 (2)−0.1187 (2)−0.76732 (18)0.0497 (5)
H140.0333−0.0574−0.71420.060*
U11U22U33U12U13U23
O10.0585 (9)0.0818 (13)0.1110 (16)0.0252 (10)−0.0147 (10)0.0074 (12)
N10.0385 (8)0.0357 (8)0.0362 (9)−0.0040 (7)0.0001 (7)−0.0009 (7)
C10.0411 (10)0.0361 (10)0.0455 (12)−0.0027 (9)0.0024 (9)0.0022 (9)
C20.0401 (10)0.0537 (12)0.0478 (13)−0.0053 (10)−0.0056 (9)−0.0027 (11)
C30.0514 (12)0.0589 (13)0.0428 (13)0.0091 (12)−0.0071 (10)0.0064 (11)
C40.0646 (13)0.0389 (10)0.0431 (12)0.0059 (11)0.0016 (11)0.0032 (9)
C50.0461 (11)0.0371 (10)0.0405 (11)−0.0071 (9)0.0010 (9)−0.0024 (9)
C60.0536 (11)0.0577 (13)0.0370 (12)0.0021 (11)−0.0035 (10)−0.0052 (11)
C70.0590 (13)0.0634 (13)0.0343 (11)−0.0013 (11)0.0053 (10)0.0057 (10)
C80.0501 (12)0.0536 (12)0.0494 (12)−0.0058 (11)0.0045 (10)0.0128 (11)
C90.0371 (9)0.0379 (10)0.0340 (10)0.0052 (9)−0.0020 (8)0.0040 (9)
C100.0425 (10)0.0446 (11)0.0434 (11)0.0035 (10)−0.0026 (9)−0.0023 (10)
C110.0581 (13)0.0581 (14)0.0450 (13)0.0129 (12)−0.0016 (11)−0.0081 (11)
C120.0618 (14)0.0737 (16)0.0436 (13)0.0145 (13)0.0173 (12)0.0027 (12)
C130.0533 (13)0.0651 (15)0.0630 (16)−0.0072 (12)0.0156 (12)0.0051 (13)
C140.0495 (11)0.0528 (13)0.0467 (13)−0.0078 (11)0.0043 (10)−0.0023 (10)
O1—C31.215 (2)C6—C71.517 (3)
N1—C11.466 (2)C7—H7A0.9700
N1—C51.471 (2)C7—H7B0.9700
N1—C91.412 (2)C7—C81.516 (3)
C1—H10.9800C8—H8A0.9700
C1—C21.537 (3)C8—H8B0.9700
C1—C81.522 (3)C9—C101.392 (3)
C2—H2A0.9700C9—C141.396 (3)
C2—H2B0.9700C10—H100.9300
C2—C31.501 (3)C10—C111.384 (3)
C3—C41.494 (3)C11—H110.9300
C4—H4A0.9700C11—C121.374 (3)
C4—H4B0.9700C12—H120.9300
C4—C51.534 (3)C12—C131.373 (3)
C5—H50.9800C13—H130.9300
C5—C61.522 (3)C13—C141.376 (3)
C6—H6A0.9700C14—H140.9300
C6—H6B0.9700
C1—N1—C5110.46 (14)C7—C6—C5112.88 (17)
C9—N1—C1119.07 (15)C7—C6—H6A109.0
C9—N1—C5118.22 (14)C7—C6—H6B109.0
N1—C1—H1107.9C6—C7—H7A109.6
N1—C1—C2111.11 (15)C6—C7—H7B109.6
N1—C1—C8108.76 (15)H7A—C7—H7B108.2
C2—C1—H1107.9C8—C7—C6110.08 (16)
C8—C1—H1107.9C8—C7—H7A109.6
C8—C1—C2113.10 (16)C8—C7—H7B109.6
C1—C2—H2A108.7C1—C8—H8A109.2
C1—C2—H2B108.7C1—C8—H8B109.2
H2A—C2—H2B107.6C7—C8—C1112.14 (16)
C3—C2—C1114.39 (17)C7—C8—H8A109.2
C3—C2—H2A108.7C7—C8—H8B109.2
C3—C2—H2B108.7H8A—C8—H8B107.9
O1—C3—C2121.5 (2)C10—C9—N1122.68 (16)
O1—C3—C4122.1 (2)C10—C9—C14117.02 (18)
C4—C3—C2116.42 (18)C14—C9—N1120.20 (17)
C3—C4—H4A108.7C9—C10—H10119.4
C3—C4—H4B108.7C11—C10—C9121.13 (19)
C3—C4—C5114.20 (16)C11—C10—H10119.4
H4A—C4—H4B107.6C10—C11—H11119.5
C5—C4—H4A108.7C12—C11—C10121.1 (2)
C5—C4—H4B108.7C12—C11—H11119.5
N1—C5—C4110.04 (15)C11—C12—H12120.9
N1—C5—H5108.0C13—C12—C11118.28 (19)
N1—C5—C6110.25 (16)C13—C12—H12120.9
C4—C5—H5108.0C12—C13—H13119.3
C6—C5—C4112.44 (16)C12—C13—C14121.5 (2)
C6—C5—H5108.0C14—C13—H13119.3
C5—C6—H6A109.0C9—C14—H14119.5
C5—C6—H6B109.0C13—C14—C9121.0 (2)
H6A—C6—H6B107.8C13—C14—H14119.5
O1—C3—C4—C5146.4 (2)C5—N1—C1—C261.85 (19)
N1—C1—C2—C3−46.2 (2)C5—N1—C1—C8−63.28 (19)
N1—C1—C8—C758.9 (2)C5—N1—C9—C10−142.12 (17)
N1—C5—C6—C7−54.0 (2)C5—N1—C9—C1441.6 (2)
N1—C9—C10—C11−177.64 (17)C5—C6—C7—C849.0 (2)
N1—C9—C14—C13177.52 (18)C6—C7—C8—C1−51.6 (2)
C1—N1—C5—C4−63.47 (19)C8—C1—C2—C376.4 (2)
C1—N1—C5—C661.12 (19)C9—N1—C1—C2−79.9 (2)
C1—N1—C9—C10−3.3 (2)C9—N1—C1—C8155.02 (16)
C1—N1—C9—C14−179.62 (16)C9—N1—C5—C478.60 (18)
C1—C2—C3—O1−148.4 (2)C9—N1—C5—C6−156.81 (15)
C1—C2—C3—C434.0 (2)C9—C10—C11—C120.7 (3)
C2—C1—C8—C7−65.0 (2)C10—C9—C14—C131.0 (3)
C2—C3—C4—C5−35.9 (2)C10—C11—C12—C130.2 (3)
C3—C4—C5—N149.8 (2)C11—C12—C13—C14−0.4 (3)
C3—C4—C5—C6−73.5 (2)C12—C13—C14—C9−0.2 (3)
C4—C5—C6—C769.2 (2)C14—C9—C10—C11−1.2 (3)
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