Literature DB >> 22719483

Methyl (R)-2-(2-chloro-phen-yl)-2-(3-nitro-phenyl-sulfon-yloxy)acetate.

Ying-Hua Li1, Hong-Wu Xu, Liu-Xue Zhang.   

Abstract

The reaction between methyl (R)-2-(2-chloro-phen-yl)-2-hy-droxy-acetate and 3-nitro-benzene-sulfonyl chloride gave the title compound, C(15)H(12)ClNO(7)S, which is a promising inter-mediate for the synthesis of Clopidrogel, an anti-platelet drug used in the prevention of strokes and heart attacks. In the crystal, mol-ecules are linked through C-H⋯O interactions, and there is also a short Cl⋯O contact present [Cl⋯O = 3.018 (2) Å].

Entities:  

Year:  2012        PMID: 22719483      PMCID: PMC3379285          DOI: 10.1107/S1600536812020016

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of (R)-2-(2-chloro­phen­yl)-2-hy­droxy­acetic acid, see: Bousquet & Musolino (2003 ▶). For related structures, see: Sun et al. (2007 ▶); Andersen et al. (2007 ▶). For the synthesis of Clopidrogel from sulfonyl­oxyacetic esters of (R)-2-(2-chloro­phen­yl)-2-hy­droxy­acetic acid, see: Bousquet & Musolino (1999 ▶); Castaldi et al. (2003 ▶); Ema et al. (2007 ▶); Zhu et al. (2010 ▶). For halogen bonds, see: Bianchi et al. (2004 ▶); Fourmigue (2009 ▶); Metrangolo et al. (2005 ▶).

Experimental

Crystal data

C15H12ClNO7S M = 385.77 Orthorhombic, a = 7.5791 (3) Å b = 11.0242 (5) Å c = 19.6736 (7) Å V = 1643.80 (11) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 293 K 0.30 × 0.25 × 0.22 mm

Data collection

Agilent Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (Crysalis PRO; Agilent, 2011 ▶) T min = 0.890, T max = 0.918 5654 measured reflections 3153 independent reflections 2680 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.086 S = 1.02 3153 reflections 227 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1209 Friedel pairs Flack parameter: 0.07 (7) Data collection: Crysalis PRO (Agilent, 2011 ▶); cell refinement: Crysalis PRO; data reduction: Crysalis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020016/zl2477sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020016/zl2477Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020016/zl2477Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12ClNO7SF(000) = 792
Mr = 385.77Dx = 1.559 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1814 reflections
a = 7.5791 (3) Åθ = 3.3–26.3°
b = 11.0242 (5) ŵ = 0.40 mm1
c = 19.6736 (7) ÅT = 293 K
V = 1643.80 (11) Å3Prism, colourless
Z = 40.30 × 0.25 × 0.22 mm
Agilent Xcalibur Eos Gemini diffractometer3153 independent reflections
Radiation source: fine-focus sealed tube2680 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 13.6612 pixels mm-1θmax = 26.4°, θmin = 3.3°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→12
Tmin = 0.890, Tmax = 0.918l = −24→15
5654 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0393P)2 + 0.1718P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3153 reflectionsΔρmax = 0.21 e Å3
227 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1209 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.07 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.47477 (9)0.03812 (6)0.23919 (4)0.03772 (18)
Cl1−0.05655 (10)0.08212 (8)0.36889 (4)0.0513 (2)
N10.2766 (4)0.3236 (3)0.04654 (14)0.0554 (7)
O70.1312 (4)0.2781 (3)0.05356 (13)0.0763 (8)
O60.3113 (4)0.4007 (2)0.00436 (14)0.0820 (8)
O50.4263 (3)−0.06820 (17)0.20270 (10)0.0474 (5)
O40.6140 (3)0.0334 (2)0.28718 (11)0.0540 (6)
O20.1443 (3)0.36269 (18)0.33486 (10)0.0449 (5)
O10.0857 (3)0.2602 (2)0.23895 (10)0.0544 (6)
O30.2979 (2)0.07757 (16)0.27557 (9)0.0342 (4)
C100.3826 (4)0.1918 (3)0.13767 (14)0.0400 (7)
H1A0.27280.15410.13830.048*
C110.4194 (4)0.2837 (3)0.09275 (14)0.0417 (7)
C120.5830 (4)0.3385 (3)0.08930 (16)0.0496 (8)
H30.60550.39840.05710.060*
C130.7118 (4)0.3032 (3)0.13422 (17)0.0504 (8)
H40.82220.33990.13270.061*
C140.6791 (4)0.2137 (3)0.18141 (16)0.0442 (7)
H50.76560.19130.21250.053*
C90.5149 (4)0.1576 (2)0.18190 (13)0.0369 (6)
C10.1619 (4)0.2713 (3)0.29162 (14)0.0371 (6)
C150.0212 (4)0.4558 (3)0.31462 (17)0.0591 (9)
H8A0.05400.48680.27080.089*
H8B0.02310.52040.34730.089*
H8C−0.09540.42210.31230.089*
C20.3017 (3)0.1846 (2)0.31890 (13)0.0336 (6)
H90.41710.22350.31330.040*
C30.2823 (4)0.1498 (2)0.39238 (14)0.0352 (6)
C80.4258 (4)0.1657 (3)0.43647 (15)0.0473 (7)
H110.53140.19630.41960.057*
C70.4125 (5)0.1367 (3)0.50432 (17)0.0584 (9)
H120.50840.14820.53310.070*
C60.2564 (5)0.0905 (3)0.52935 (15)0.0588 (10)
H130.24720.07170.57530.071*
C50.1147 (5)0.0719 (3)0.48751 (15)0.0495 (8)
H140.01080.03910.50460.059*
C40.1279 (4)0.1026 (3)0.41929 (13)0.0378 (7)
U11U22U33U12U13U23
S10.0318 (3)0.0408 (4)0.0406 (4)0.0007 (3)0.0028 (3)0.0023 (3)
Cl10.0389 (4)0.0714 (5)0.0437 (4)−0.0063 (4)−0.0013 (3)0.0053 (4)
N10.069 (2)0.0531 (17)0.0436 (15)0.0037 (16)−0.0046 (15)0.0024 (14)
O70.0629 (16)0.100 (2)0.0655 (16)−0.0087 (15)−0.0233 (14)0.0133 (16)
O60.104 (2)0.0721 (18)0.0705 (16)0.0062 (17)−0.0065 (17)0.0295 (16)
O50.0533 (13)0.0350 (11)0.0539 (12)0.0010 (9)0.0129 (11)−0.0059 (9)
O40.0383 (11)0.0687 (14)0.0548 (13)0.0030 (11)−0.0034 (10)0.0141 (12)
O20.0473 (12)0.0420 (11)0.0456 (11)0.0095 (9)0.0025 (10)0.0033 (10)
O10.0526 (13)0.0699 (15)0.0407 (11)0.0089 (11)−0.0095 (11)0.0048 (11)
O30.0314 (9)0.0376 (10)0.0338 (9)−0.0052 (8)0.0008 (8)−0.0048 (8)
C100.0378 (15)0.0438 (17)0.0384 (15)−0.0057 (13)−0.0006 (13)−0.0064 (14)
C110.0507 (18)0.0399 (16)0.0345 (14)0.0000 (14)−0.0008 (14)−0.0044 (13)
C120.064 (2)0.0359 (16)0.0491 (18)−0.0059 (15)0.0150 (18)0.0029 (14)
C130.0412 (17)0.0444 (18)0.066 (2)−0.0113 (14)0.0076 (17)−0.0015 (17)
C140.0352 (16)0.0423 (16)0.0551 (18)−0.0029 (13)0.0016 (15)−0.0037 (15)
C90.0364 (15)0.0370 (14)0.0373 (14)−0.0026 (12)0.0047 (13)−0.0016 (12)
C10.0303 (15)0.0449 (16)0.0361 (14)−0.0003 (12)0.0022 (13)0.0069 (14)
C150.056 (2)0.056 (2)0.066 (2)0.0220 (17)0.0167 (18)0.0188 (18)
C20.0305 (14)0.0344 (14)0.0360 (14)−0.0042 (12)−0.0024 (13)−0.0030 (12)
C30.0426 (15)0.0288 (14)0.0342 (14)0.0039 (12)−0.0077 (13)−0.0058 (12)
C80.0567 (19)0.0361 (16)0.0493 (17)−0.0013 (14)−0.0122 (17)−0.0049 (14)
C70.080 (3)0.0479 (19)0.0473 (18)0.0004 (19)−0.0303 (19)−0.0086 (16)
C60.094 (3)0.0486 (19)0.0340 (16)0.0087 (19)−0.0082 (19)−0.0031 (16)
C50.066 (2)0.0449 (18)0.0378 (15)0.0056 (16)0.0015 (15)0.0010 (14)
C40.0425 (16)0.0377 (15)0.0332 (14)0.0062 (12)−0.0016 (13)−0.0024 (13)
S1—O41.417 (2)C13—H40.9300
S1—O41.417 (2)C14—C91.390 (4)
S1—O51.423 (2)C14—H50.9300
S1—O31.5809 (18)C1—C21.524 (4)
S1—C91.760 (3)C15—H8A0.9600
Cl1—C41.728 (3)C15—H8B0.9600
N1—O61.217 (3)C15—H8C0.9600
N1—O71.218 (4)C2—C31.503 (4)
N1—C111.480 (4)C2—H90.9800
O2—C11.326 (3)C3—C41.386 (4)
O2—C151.443 (3)C3—C81.402 (4)
O1—C11.192 (3)C8—C71.376 (4)
O3—C21.456 (3)C8—H110.9300
C10—C111.373 (4)C7—C61.379 (5)
C10—C91.380 (4)C7—H120.9300
C10—H1A0.9300C6—C51.368 (4)
C11—C121.381 (4)C6—H130.9300
C12—C131.374 (4)C5—C41.388 (4)
C12—H30.9300C5—H140.9300
C13—C141.377 (4)
O4—S1—O5119.91 (14)O1—C1—C2125.3 (3)
O4—S1—O5119.91 (14)O2—C1—C2108.7 (2)
O4—S1—O3109.87 (11)O2—C15—H8A109.5
O4—S1—O3109.87 (11)O2—C15—H8B109.5
O5—S1—O3103.66 (11)H8A—C15—H8B109.5
O4—S1—C9108.98 (13)O2—C15—H8C109.5
O4—S1—C9108.98 (13)H8A—C15—H8C109.5
O5—S1—C9109.75 (12)H8B—C15—H8C109.5
O3—S1—C9103.33 (12)O3—C2—C3110.7 (2)
O6—N1—O7124.1 (3)O3—C2—C1106.7 (2)
O6—N1—C11117.9 (3)C3—C2—C1115.5 (2)
O7—N1—C11118.0 (3)O3—C2—H9107.9
C1—O2—C15115.4 (2)C3—C2—H9107.9
C2—O3—S1118.10 (15)C1—C2—H9107.9
C11—C10—C9117.4 (3)C4—C3—C8117.7 (3)
C11—C10—H1A121.3C4—C3—C2123.1 (2)
C9—C10—H1A121.3C8—C3—C2119.2 (3)
C10—C11—C12122.5 (3)C7—C8—C3121.0 (3)
C10—C11—N1117.7 (3)C7—C8—H11119.5
C12—C11—N1119.8 (3)C3—C8—H11119.5
C13—C12—C11118.8 (3)C8—C7—C6119.6 (3)
C13—C12—H3120.6C8—C7—H12120.2
C11—C12—H3120.6C6—C7—H12120.2
C12—C13—C14120.6 (3)C5—C6—C7120.9 (3)
C12—C13—H4119.7C5—C6—H13119.5
C14—C13—H4119.7C7—C6—H13119.5
C13—C14—C9119.0 (3)C6—C5—C4119.3 (3)
C13—C14—H5120.5C6—C5—H14120.4
C9—C14—H5120.5C4—C5—H14120.4
C10—C9—C14121.6 (3)C3—C4—C5121.4 (3)
C10—C9—S1118.9 (2)C3—C4—Cl1120.9 (2)
C14—C9—S1119.5 (2)C5—C4—Cl1117.7 (2)
O1—C1—O2125.9 (3)
D—H···AD—HH···AD···AD—H···A
C14—H5···O40.932.552.920 (4)104
C14—H5···O1i0.932.603.323 (4)135
C15—H8C···O5ii0.962.533.419 (4)155
C4—Cl1···O4iii1.73 (1)3.02 (1)4.744 (4)176 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H5⋯O40.932.552.920 (4)104
C14—H5⋯O1i0.932.603.323 (4)135
C15—H8C⋯O5ii0.962.533.419 (4)155

Symmetry codes: (i) ; (ii) .

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