Literature DB >> 22719475

6-(4-Bromo-phen-yl)-3-methyl-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazine.

Hoong-Kun Fun, Ching Kheng Quah, Hatem A Abdel-Aziz, Mohamed I Attia.   

Abstract

In the title compound, C(11)H(9)BrN(4)S, the 1,2,4-triazole ring is essentially planar (r.m.s. deviation = 0.020 Å) and makes a dihedral angle of 29.1 (5)° with the bromo-benzene ring. The 3,6-dihydro-1,3,4-thia-diazine ring adopts a twist-boat conformation. In the crystal, mol-ecules are linked by C-H⋯N inter-actions into sheets lying parallel to the (010) plane. The same N atom accepts two such hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719475      PMCID: PMC3379277          DOI: 10.1107/S1600536812019885

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the chemistry and biological activity of the title compound, see: Holla et al. (2001 ▶); Prasad et al. (1998 ▶); Dawood et al. (2005 ▶); Abdel-Aziz et al. (2007 ▶); Abdel-Wahab et al. (2009 ▶). For further synthesis details, see: Dickinson & Jacobsen (1975 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C11H9BrN4S M = 309.19 Monoclinic, a = 4.0047 (10) Å b = 13.424 (3) Å c = 10.938 (3) Å β = 99.650 (5)° V = 579.7 (2) Å3 Z = 2 Mo Kα radiation μ = 3.71 mm−1 T = 100 K 0.46 × 0.10 × 0.03 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.281, T max = 0.910 5127 measured reflections 2087 independent reflections 1904 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.152 S = 1.04 2087 reflections 149 parameters 2 restraints H-atom parameters constrained Δρmax = 3.33 e Å−3 Δρmin = −0.86 e Å−3 Absolute structure: Flack (1983 ▶), 950 Friedel pairs Flack parameter: 0.01 (2) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019885/hb6774sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019885/hb6774Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019885/hb6774Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9BrN4SF(000) = 308
Mr = 309.19Dx = 1.771 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 2139 reflections
a = 4.0047 (10) Åθ = 2.4–27.8°
b = 13.424 (3) ŵ = 3.71 mm1
c = 10.938 (3) ÅT = 100 K
β = 99.650 (5)°Plate, colourless
V = 579.7 (2) Å30.46 × 0.10 × 0.03 mm
Z = 2
Bruker SMART APEXII CCD diffractometer2087 independent reflections
Radiation source: fine-focus sealed tube1904 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
φ and ω scansθmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −4→4
Tmin = 0.281, Tmax = 0.910k = −15→16
5127 measured reflectionsl = −13→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.152w = 1/[σ2(Fo2) + (0.1109P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2087 reflectionsΔρmax = 3.33 e Å3
149 parametersΔρmin = −0.86 e Å3
2 restraintsAbsolute structure: Flack (1983), 950 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (2)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.0080 (5)−0.00421 (15)0.6539 (3)0.0264 (5)
Br10.93512 (13)0.44899 (5)1.15745 (9)0.0234 (3)
N1−0.0050 (18)0.2320 (5)0.6525 (9)0.0191 (15)
N2−0.2131 (19)0.1740 (6)0.5631 (6)0.0203 (16)
N3−0.420 (2)0.0529 (5)0.4417 (8)0.0308 (18)
N4−0.5398 (18)0.1444 (6)0.3863 (7)0.0288 (16)
C10.406 (2)0.2109 (6)0.9745 (7)0.0188 (15)
H1A0.33740.14780.99530.023*
C20.592 (2)0.2704 (6)1.0655 (7)0.0212 (16)
H2A0.64940.24661.14620.025*
C30.6906 (19)0.3639 (6)1.0365 (7)0.0193 (16)
C40.622 (2)0.3988 (6)0.9129 (7)0.0215 (16)
H4A0.70330.46030.89190.026*
C50.4312 (19)0.3397 (6)0.8237 (7)0.0175 (15)
H5A0.37560.36390.74320.021*
C60.319 (2)0.2450 (7)0.8506 (8)0.0194 (18)
C70.106 (2)0.1867 (6)0.7562 (8)0.0178 (18)
C80.006 (2)0.0807 (7)0.7828 (9)0.0220 (18)
H8A−0.21940.08150.80440.026*
H8B0.16080.05590.85400.026*
C9−0.225 (3)0.0749 (8)0.5464 (9)0.026 (2)
C10−0.406 (2)0.2173 (7)0.4581 (9)0.0256 (14)
C11−0.458 (2)0.3240 (7)0.4400 (9)0.0256 (14)
H11A−0.56700.33650.35640.038*
H11B−0.24310.35740.45520.038*
H11C−0.59810.34840.49660.038*
U11U22U33U12U13U23
S10.0275 (13)0.0247 (10)0.0279 (10)0.0019 (7)0.0075 (10)−0.0060 (9)
Br10.0201 (4)0.0356 (4)0.0131 (4)−0.0002 (4)−0.0007 (2)−0.0050 (4)
N10.013 (4)0.025 (3)0.018 (3)0.002 (2)−0.001 (3)−0.005 (3)
N20.025 (4)0.028 (4)0.008 (3)0.002 (3)0.002 (3)0.002 (3)
N30.033 (5)0.038 (4)0.022 (4)−0.006 (3)0.006 (3)−0.010 (3)
N40.025 (4)0.047 (5)0.017 (3)−0.005 (3)0.009 (3)−0.007 (3)
C10.024 (4)0.023 (4)0.009 (4)−0.001 (3)0.003 (3)0.002 (3)
C20.020 (4)0.032 (4)0.011 (4)0.007 (3)0.001 (3)−0.003 (3)
C30.015 (4)0.029 (4)0.014 (4)0.006 (3)0.004 (3)0.001 (3)
C40.022 (4)0.026 (4)0.016 (4)0.002 (3)0.003 (3)0.004 (3)
C50.017 (4)0.027 (4)0.008 (3)0.001 (3)0.002 (3)0.001 (3)
C60.023 (4)0.029 (4)0.007 (4)0.006 (3)0.003 (3)0.000 (3)
C70.026 (5)0.013 (4)0.017 (5)0.006 (3)0.009 (4)0.001 (3)
C80.027 (5)0.018 (4)0.022 (5)−0.003 (3)0.009 (4)0.001 (3)
C90.025 (5)0.032 (5)0.020 (5)−0.003 (3)0.005 (4)−0.006 (3)
C100.015 (3)0.048 (4)0.016 (3)−0.004 (3)0.007 (2)0.000 (3)
C110.015 (3)0.048 (4)0.016 (3)−0.004 (3)0.007 (2)0.000 (3)
S1—C91.737 (11)C2—H2A0.9300
S1—C81.813 (10)C3—C41.413 (11)
Br1—C31.892 (8)C4—C51.384 (11)
N1—C71.298 (13)C4—H4A0.9300
N1—N21.408 (11)C5—C61.395 (13)
N2—C91.342 (14)C5—H5A0.9300
N2—C101.399 (12)C6—C71.454 (12)
N3—C91.307 (13)C7—C81.519 (13)
N3—N41.417 (11)C8—H8A0.9700
N4—C101.311 (12)C8—H8B0.9700
C1—C21.391 (11)C10—C111.455 (14)
C1—C61.417 (11)C11—H11A0.9600
C1—H1A0.9300C11—H11B0.9600
C2—C31.370 (12)C11—H11C0.9600
C9—S1—C894.0 (4)C5—C6—C7120.8 (7)
C7—N1—N2115.1 (6)C1—C6—C7121.7 (8)
C9—N2—C10107.4 (8)N1—C7—C6116.3 (8)
C9—N2—N1130.2 (8)N1—C7—C8122.9 (8)
C10—N2—N1121.4 (8)C6—C7—C8120.7 (8)
C9—N3—N4106.7 (7)C7—C8—S1113.8 (7)
C10—N4—N3108.5 (7)C7—C8—H8A108.8
C2—C1—C6121.0 (8)S1—C8—H8A108.8
C2—C1—H1A119.5C7—C8—H8B108.8
C6—C1—H1A119.5S1—C8—H8B108.8
C3—C2—C1120.1 (8)H8A—C8—H8B107.7
C3—C2—H2A120.0N3—C9—N2110.2 (9)
C1—C2—H2A120.0N3—C9—S1129.0 (8)
C2—C3—C4120.5 (7)N2—C9—S1120.7 (7)
C2—C3—Br1121.8 (6)N4—C10—N2107.1 (9)
C4—C3—Br1117.7 (6)N4—C10—C11128.2 (9)
C5—C4—C3118.7 (7)N2—C10—C11124.6 (8)
C5—C4—H4A120.6C10—C11—H11A109.5
C3—C4—H4A120.6C10—C11—H11B109.5
C4—C5—C6122.2 (7)H11A—C11—H11B109.5
C4—C5—H5A118.9C10—C11—H11C109.5
C6—C5—H5A118.9H11A—C11—H11C109.5
C5—C6—C1117.4 (8)H11B—C11—H11C109.5
C7—N1—N2—C9−26.3 (14)C1—C6—C7—C8−8.3 (13)
C7—N1—N2—C10166.6 (8)N1—C7—C8—S143.3 (11)
C9—N3—N4—C101.6 (11)C6—C7—C8—S1−140.3 (7)
C6—C1—C2—C30.9 (12)C9—S1—C8—C7−48.8 (7)
C1—C2—C3—C4−3.7 (12)N4—N3—C9—N20.5 (11)
C1—C2—C3—Br1178.6 (6)N4—N3—C9—S1−177.5 (7)
C2—C3—C4—C54.8 (12)C10—N2—C9—N3−2.2 (12)
Br1—C3—C4—C5−177.3 (6)N1—N2—C9—N3−170.6 (9)
C3—C4—C5—C6−3.3 (12)C10—N2—C9—S1176.0 (7)
C4—C5—C6—C10.6 (13)N1—N2—C9—S17.5 (14)
C4—C5—C6—C7177.0 (7)C8—S1—C9—N3−154.5 (10)
C2—C1—C6—C50.7 (13)C8—S1—C9—N227.7 (9)
C2—C1—C6—C7−175.7 (8)N3—N4—C10—N2−2.8 (10)
N2—N1—C7—C6−179.6 (7)N3—N4—C10—C11−179.4 (9)
N2—N1—C7—C8−3.0 (13)C9—N2—C10—N43.1 (10)
C5—C6—C7—N1−7.9 (13)N1—N2—C10—N4172.8 (8)
C1—C6—C7—N1168.4 (9)C9—N2—C10—C11179.8 (9)
C5—C6—C7—C8175.5 (9)N1—N2—C10—C11−10.5 (13)
D—H···AD—HH···AD···AD—H···A
C8—H8A···N3i0.972.563.185 (12)122
C8—H8B···N3ii0.972.313.191 (12)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯N3i0.972.563.185 (12)122
C8—H8B⋯N3ii0.972.313.191 (12)151

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Studies on nitrophenylfuran derivatives part Xii. synthesis, characterization, antibacterial and antiviral activities of some nitrophenylfurfurylidene-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazines.

Authors:  B S Holla; P M Akberali; M K Shivananda
Journal:  Farmaco       Date:  2001-12

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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