| Literature DB >> 22719469 |
David Turner, Albert Fratini, Claudia Turro, Michael Check, Chad Hunter.
Abstract
The title compound, C(9)H(11)NOS, exhibits a unique structural motif, with free rotation of the aliphatic oxathiane ring about the C-C bond connecting this moiety to the aromatic pyridine ring. The structure elucidation was undertaken due to its potential as a bidentate ligand for organometallic complexes. The oxathiane ring adopts the expected chair conformation, with the S atom in proximity to the N atom on the pyridine ring. The corresponding S-C-C-N torsion angle is 69.07 (14)°. In the crystal, mol-ecules aggregate as centrosymmetric pairs connected by pairs of C-H⋯N hydrogen bonds.Entities:
Year: 2012 PMID: 22719469 PMCID: PMC3379271 DOI: 10.1107/S1600536812018661
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11NOS | |
| Monoclinic, | Cu |
| Hall symbol: -P 2yn | Cell parameters from 3102 reflections |
| θ = 0.5–72.0° | |
| µ = 2.89 mm−1 | |
| β = 92.940 (3)° | Block, colourless |
| 0.48 × 0.46 × 0.36 mm | |
| Oxford Diffraction Xcalibur Sapphire3 diffractometer | 1708 independent reflections |
| Radiation source: Enhance (Cu) xray source | 1656 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.3384 pixels mm-1 | θmax = 72.1°, θmin = 5.9° |
| ω scans | |
| Absorption correction: analytical [ | |
| 3675 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| All H-atom parameters refined | |
| (Δ/σ)max < 0.001 | |
| 1708 reflections | Δρmax = 0.32 e Å−3 |
| 154 parameters | Δρmin = −0.30 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0187 (14) |
| Experimental. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.20151 (4) | 0.36641 (3) | 0.12188 (3) | 0.01796 (16) | |
| O1 | 0.39908 (13) | 0.45308 (9) | 0.33518 (10) | 0.0168 (2) | |
| N1 | 0.59533 (16) | 0.33730 (11) | 0.03808 (12) | 0.0174 (3) | |
| C1 | 0.40671 (19) | 0.43156 (12) | 0.19284 (14) | 0.0153 (3) | |
| H1 | 0.421 (2) | 0.5024 (17) | 0.1426 (18) | 0.020 (4)* | |
| C2 | 0.05140 (19) | 0.47642 (13) | 0.17565 (15) | 0.0190 (3) | |
| H2A | 0.070 (3) | 0.5468 (17) | 0.1214 (19) | 0.025 (5)* | |
| H2B | −0.069 (3) | 0.4511 (17) | 0.1510 (19) | 0.023 (5)* | |
| C3 | 0.0792 (2) | 0.49944 (14) | 0.32842 (15) | 0.0202 (3) | |
| H3B | 0.002 (3) | 0.5605 (18) | 0.354 (2) | 0.032 (5)* | |
| H3A | 0.049 (3) | 0.4302 (18) | 0.381 (2) | 0.029 (5)* | |
| C4 | 0.2682 (2) | 0.53679 (13) | 0.36591 (16) | 0.0209 (3) | |
| H4A | 0.295 (3) | 0.6069 (18) | 0.316 (2) | 0.028 (5)* | |
| H4B | 0.283 (2) | 0.5485 (16) | 0.465 (2) | 0.022 (5)* | |
| C5 | 0.55562 (19) | 0.35019 (12) | 0.16969 (14) | 0.0150 (3) | |
| C6 | 0.64241 (19) | 0.29098 (12) | 0.27685 (15) | 0.0173 (3) | |
| H6 | 0.607 (3) | 0.3005 (17) | 0.368 (2) | 0.025 (5)* | |
| C7 | 0.7761 (2) | 0.21501 (13) | 0.24709 (16) | 0.0196 (3) | |
| H7 | 0.839 (3) | 0.1741 (17) | 0.322 (2) | 0.024 (5)* | |
| C8 | 0.81619 (19) | 0.19959 (13) | 0.11104 (16) | 0.0192 (3) | |
| H8 | 0.903 (3) | 0.1456 (16) | 0.089 (2) | 0.023 (5)* | |
| C9 | 0.72283 (19) | 0.26255 (13) | 0.01104 (15) | 0.0182 (3) | |
| H9 | 0.751 (2) | 0.2565 (16) | −0.082 (2) | 0.018 (4)* |
| S1 | 0.0163 (2) | 0.0193 (2) | 0.0182 (2) | 0.00117 (12) | −0.00020 (14) | −0.00488 (12) |
| O1 | 0.0182 (5) | 0.0197 (5) | 0.0127 (5) | 0.0034 (4) | 0.0013 (4) | −0.0034 (4) |
| N1 | 0.0188 (6) | 0.0182 (6) | 0.0155 (6) | −0.0010 (5) | 0.0038 (5) | −0.0002 (5) |
| C1 | 0.0175 (7) | 0.0164 (7) | 0.0120 (6) | −0.0013 (5) | 0.0021 (5) | 0.0006 (5) |
| C2 | 0.0171 (7) | 0.0217 (7) | 0.0183 (7) | 0.0028 (6) | 0.0006 (5) | 0.0000 (6) |
| C3 | 0.0200 (7) | 0.0224 (8) | 0.0188 (7) | 0.0057 (6) | 0.0047 (5) | −0.0012 (6) |
| C4 | 0.0231 (7) | 0.0193 (7) | 0.0202 (7) | 0.0046 (6) | 0.0008 (6) | −0.0069 (6) |
| C5 | 0.0147 (7) | 0.0149 (6) | 0.0156 (7) | −0.0033 (5) | 0.0033 (5) | −0.0009 (5) |
| C6 | 0.0167 (7) | 0.0198 (7) | 0.0154 (7) | −0.0004 (5) | 0.0015 (5) | 0.0002 (5) |
| C7 | 0.0184 (7) | 0.0200 (7) | 0.0202 (7) | 0.0006 (6) | −0.0003 (6) | 0.0011 (6) |
| C8 | 0.0151 (7) | 0.0193 (7) | 0.0234 (8) | −0.0001 (6) | 0.0036 (6) | −0.0029 (6) |
| C9 | 0.0187 (7) | 0.0201 (7) | 0.0163 (7) | −0.0020 (6) | 0.0050 (5) | −0.0020 (6) |
| S1—C2 | 1.8174 (15) | C3—H3B | 0.97 (2) |
| S1—C1 | 1.8307 (14) | C3—H3A | 1.00 (2) |
| O1—C1 | 1.4168 (16) | C4—H4A | 0.99 (2) |
| O1—C4 | 1.4386 (17) | C4—H4B | 0.973 (19) |
| N1—C9 | 1.3407 (19) | C5—C6 | 1.393 (2) |
| N1—C5 | 1.3428 (18) | C6—C7 | 1.390 (2) |
| C1—C5 | 1.5030 (19) | C6—H6 | 0.95 (2) |
| C1—H1 | 0.979 (19) | C7—C8 | 1.389 (2) |
| C2—C3 | 1.520 (2) | C7—H7 | 0.98 (2) |
| C2—H2A | 1.00 (2) | C8—C9 | 1.389 (2) |
| C2—H2B | 0.97 (2) | C8—H8 | 0.95 (2) |
| C3—C4 | 1.517 (2) | C9—H9 | 0.951 (19) |
| C2—S1—C1 | 96.66 (7) | O1—C4—C3 | 113.23 (12) |
| C1—O1—C4 | 112.99 (11) | O1—C4—H4A | 108.2 (12) |
| C9—N1—C5 | 117.39 (13) | C3—C4—H4A | 109.6 (12) |
| O1—C1—C5 | 109.29 (11) | O1—C4—H4B | 105.1 (11) |
| O1—C1—S1 | 111.76 (9) | C3—C4—H4B | 109.6 (11) |
| C5—C1—S1 | 107.25 (10) | H4A—C4—H4B | 111.0 (16) |
| O1—C1—H1 | 110.5 (11) | N1—C5—C6 | 122.87 (13) |
| C5—C1—H1 | 111.6 (11) | N1—C5—C1 | 114.90 (12) |
| S1—C1—H1 | 106.5 (11) | C6—C5—C1 | 122.22 (13) |
| C3—C2—S1 | 110.78 (10) | C7—C6—C5 | 118.94 (14) |
| C3—C2—H2A | 110.8 (11) | C7—C6—H6 | 120.8 (12) |
| S1—C2—H2A | 109.6 (11) | C5—C6—H6 | 120.2 (12) |
| C3—C2—H2B | 112.2 (11) | C8—C7—C6 | 118.67 (14) |
| S1—C2—H2B | 107.1 (12) | C8—C7—H7 | 122.0 (12) |
| H2A—C2—H2B | 106.2 (16) | C6—C7—H7 | 119.3 (12) |
| C4—C3—C2 | 111.67 (12) | C7—C8—C9 | 118.34 (14) |
| C4—C3—H3B | 106.9 (12) | C7—C8—H8 | 119.3 (12) |
| C2—C3—H3B | 109.6 (12) | C9—C8—H8 | 122.4 (12) |
| C4—C3—H3A | 110.4 (12) | N1—C9—C8 | 123.77 (13) |
| C2—C3—H3A | 109.6 (12) | N1—C9—H9 | 115.9 (11) |
| H3B—C3—H3A | 108.6 (16) | C8—C9—H9 | 120.3 (11) |
| C4—O1—C1—C5 | 175.71 (11) | O1—C1—C5—N1 | −169.60 (11) |
| C4—O1—C1—S1 | −65.74 (13) | S1—C1—C5—N1 | 69.07 (14) |
| C2—S1—C1—O1 | 56.31 (11) | O1—C1—C5—C6 | 11.82 (18) |
| C2—S1—C1—C5 | 176.07 (9) | S1—C1—C5—C6 | −109.50 (13) |
| C1—S1—C2—C3 | −52.99 (12) | N1—C5—C6—C7 | 0.0 (2) |
| S1—C2—C3—C4 | 59.31 (15) | C1—C5—C6—C7 | 178.42 (13) |
| C1—O1—C4—C3 | 64.95 (16) | C5—C6—C7—C8 | −1.0 (2) |
| C2—C3—C4—O1 | −61.17 (17) | C6—C7—C8—C9 | 1.2 (2) |
| C9—N1—C5—C6 | 0.9 (2) | C5—N1—C9—C8 | −0.8 (2) |
| C9—N1—C5—C1 | −177.62 (12) | C7—C8—C9—N1 | −0.3 (2) |
| H··· | ||||
| C1—H1···N1i | 0.979 (19) | 2.586 (19) | 3.5399 (19) | 164.8 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1⋯N1i | 0.979 (19) | 2.586 (19) | 3.5399 (19) | 164.8 (14) |
Symmetry code: (i) .