Literature DB >> 22719469

2-(Pyridin-2-yl)-1,3-oxathiane.

David Turner, Albert Fratini, Claudia Turro, Michael Check, Chad Hunter.   

Abstract

The title compound, C(9)H(11)NOS, exhibits a unique structural motif, with free rotation of the aliphatic oxathiane ring about the C-C bond connecting this moiety to the aromatic pyridine ring. The structure elucidation was undertaken due to its potential as a bidentate ligand for organometallic complexes. The oxathiane ring adopts the expected chair conformation, with the S atom in proximity to the N atom on the pyridine ring. The corresponding S-C-C-N torsion angle is 69.07 (14)°. In the crystal, mol-ecules aggregate as centrosymmetric pairs connected by pairs of C-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719469      PMCID: PMC3379271          DOI: 10.1107/S1600536812018661

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The corresponding organic compound, 2-(2-pyridyl)-1,3-oxathiane, forms dimers via weak inter­molecular C—H⋯N hydrogen bonds, exhibiting similar photophysical properties as previously observed (Rachford et al., 2005 ▶; Rachford & Rack, 2006 ▶).

Experimental

Crystal data

C9H11NOS M = 181.26 Monoclinic, a = 7.5329 (3) Å b = 11.8099 (5) Å c = 9.7632 (4) Å β = 92.940 (3)° V = 867.42 (6) Å3 Z = 4 Cu Kα radiation μ = 2.89 mm−1 T = 110 K 0.48 × 0.46 × 0.36 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.344, T max = 0.519 3675 measured reflections 1708 independent reflections 1656 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.07 1708 reflections 154 parameters All H-atom parameters refined Δρmax = 0.32 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) ▶; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812018661/nr2024sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018661/nr2024Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018661/nr2024Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11NOSF(000) = 384
Mr = 181.26Dx = 1.388 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 3102 reflections
a = 7.5329 (3) Åθ = 0.5–72.0°
b = 11.8099 (5) ŵ = 2.89 mm1
c = 9.7632 (4) ÅT = 110 K
β = 92.940 (3)°Block, colourless
V = 867.42 (6) Å30.48 × 0.46 × 0.36 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer1708 independent reflections
Radiation source: Enhance (Cu) xray source1656 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 16.3384 pixels mm-1θmax = 72.1°, θmin = 5.9°
ω scansh = −6→9
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010), based on expressions derived by Clark & Reid (1995)]k = −12→14
Tmin = 0.344, Tmax = 0.519l = −12→12
3675 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032All H-atom parameters refined
wR(F2) = 0.085w = 1/[σ2(Fo2) + (0.0498P)2 + 0.3816P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
1708 reflectionsΔρmax = 0.32 e Å3
154 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0187 (14)
Experimental. CrysAlis PRO (Oxford Diffraction, 2010). Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by R. C. Clark & J. S. Reid (Clark & Reid, 1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.20151 (4)0.36641 (3)0.12188 (3)0.01796 (16)
O10.39908 (13)0.45308 (9)0.33518 (10)0.0168 (2)
N10.59533 (16)0.33730 (11)0.03808 (12)0.0174 (3)
C10.40671 (19)0.43156 (12)0.19284 (14)0.0153 (3)
H10.421 (2)0.5024 (17)0.1426 (18)0.020 (4)*
C20.05140 (19)0.47642 (13)0.17565 (15)0.0190 (3)
H2A0.070 (3)0.5468 (17)0.1214 (19)0.025 (5)*
H2B−0.069 (3)0.4511 (17)0.1510 (19)0.023 (5)*
C30.0792 (2)0.49944 (14)0.32842 (15)0.0202 (3)
H3B0.002 (3)0.5605 (18)0.354 (2)0.032 (5)*
H3A0.049 (3)0.4302 (18)0.381 (2)0.029 (5)*
C40.2682 (2)0.53679 (13)0.36591 (16)0.0209 (3)
H4A0.295 (3)0.6069 (18)0.316 (2)0.028 (5)*
H4B0.283 (2)0.5485 (16)0.465 (2)0.022 (5)*
C50.55562 (19)0.35019 (12)0.16969 (14)0.0150 (3)
C60.64241 (19)0.29098 (12)0.27685 (15)0.0173 (3)
H60.607 (3)0.3005 (17)0.368 (2)0.025 (5)*
C70.7761 (2)0.21501 (13)0.24709 (16)0.0196 (3)
H70.839 (3)0.1741 (17)0.322 (2)0.024 (5)*
C80.81619 (19)0.19959 (13)0.11104 (16)0.0192 (3)
H80.903 (3)0.1456 (16)0.089 (2)0.023 (5)*
C90.72283 (19)0.26255 (13)0.01104 (15)0.0182 (3)
H90.751 (2)0.2565 (16)−0.082 (2)0.018 (4)*
U11U22U33U12U13U23
S10.0163 (2)0.0193 (2)0.0182 (2)0.00117 (12)−0.00020 (14)−0.00488 (12)
O10.0182 (5)0.0197 (5)0.0127 (5)0.0034 (4)0.0013 (4)−0.0034 (4)
N10.0188 (6)0.0182 (6)0.0155 (6)−0.0010 (5)0.0038 (5)−0.0002 (5)
C10.0175 (7)0.0164 (7)0.0120 (6)−0.0013 (5)0.0021 (5)0.0006 (5)
C20.0171 (7)0.0217 (7)0.0183 (7)0.0028 (6)0.0006 (5)0.0000 (6)
C30.0200 (7)0.0224 (8)0.0188 (7)0.0057 (6)0.0047 (5)−0.0012 (6)
C40.0231 (7)0.0193 (7)0.0202 (7)0.0046 (6)0.0008 (6)−0.0069 (6)
C50.0147 (7)0.0149 (6)0.0156 (7)−0.0033 (5)0.0033 (5)−0.0009 (5)
C60.0167 (7)0.0198 (7)0.0154 (7)−0.0004 (5)0.0015 (5)0.0002 (5)
C70.0184 (7)0.0200 (7)0.0202 (7)0.0006 (6)−0.0003 (6)0.0011 (6)
C80.0151 (7)0.0193 (7)0.0234 (8)−0.0001 (6)0.0036 (6)−0.0029 (6)
C90.0187 (7)0.0201 (7)0.0163 (7)−0.0020 (6)0.0050 (5)−0.0020 (6)
S1—C21.8174 (15)C3—H3B0.97 (2)
S1—C11.8307 (14)C3—H3A1.00 (2)
O1—C11.4168 (16)C4—H4A0.99 (2)
O1—C41.4386 (17)C4—H4B0.973 (19)
N1—C91.3407 (19)C5—C61.393 (2)
N1—C51.3428 (18)C6—C71.390 (2)
C1—C51.5030 (19)C6—H60.95 (2)
C1—H10.979 (19)C7—C81.389 (2)
C2—C31.520 (2)C7—H70.98 (2)
C2—H2A1.00 (2)C8—C91.389 (2)
C2—H2B0.97 (2)C8—H80.95 (2)
C3—C41.517 (2)C9—H90.951 (19)
C2—S1—C196.66 (7)O1—C4—C3113.23 (12)
C1—O1—C4112.99 (11)O1—C4—H4A108.2 (12)
C9—N1—C5117.39 (13)C3—C4—H4A109.6 (12)
O1—C1—C5109.29 (11)O1—C4—H4B105.1 (11)
O1—C1—S1111.76 (9)C3—C4—H4B109.6 (11)
C5—C1—S1107.25 (10)H4A—C4—H4B111.0 (16)
O1—C1—H1110.5 (11)N1—C5—C6122.87 (13)
C5—C1—H1111.6 (11)N1—C5—C1114.90 (12)
S1—C1—H1106.5 (11)C6—C5—C1122.22 (13)
C3—C2—S1110.78 (10)C7—C6—C5118.94 (14)
C3—C2—H2A110.8 (11)C7—C6—H6120.8 (12)
S1—C2—H2A109.6 (11)C5—C6—H6120.2 (12)
C3—C2—H2B112.2 (11)C8—C7—C6118.67 (14)
S1—C2—H2B107.1 (12)C8—C7—H7122.0 (12)
H2A—C2—H2B106.2 (16)C6—C7—H7119.3 (12)
C4—C3—C2111.67 (12)C7—C8—C9118.34 (14)
C4—C3—H3B106.9 (12)C7—C8—H8119.3 (12)
C2—C3—H3B109.6 (12)C9—C8—H8122.4 (12)
C4—C3—H3A110.4 (12)N1—C9—C8123.77 (13)
C2—C3—H3A109.6 (12)N1—C9—H9115.9 (11)
H3B—C3—H3A108.6 (16)C8—C9—H9120.3 (11)
C4—O1—C1—C5175.71 (11)O1—C1—C5—N1−169.60 (11)
C4—O1—C1—S1−65.74 (13)S1—C1—C5—N169.07 (14)
C2—S1—C1—O156.31 (11)O1—C1—C5—C611.82 (18)
C2—S1—C1—C5176.07 (9)S1—C1—C5—C6−109.50 (13)
C1—S1—C2—C3−52.99 (12)N1—C5—C6—C70.0 (2)
S1—C2—C3—C459.31 (15)C1—C5—C6—C7178.42 (13)
C1—O1—C4—C364.95 (16)C5—C6—C7—C8−1.0 (2)
C2—C3—C4—O1−61.17 (17)C6—C7—C8—C91.2 (2)
C9—N1—C5—C60.9 (2)C5—N1—C9—C8−0.8 (2)
C9—N1—C5—C1−177.62 (12)C7—C8—C9—N1−0.3 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1···N1i0.979 (19)2.586 (19)3.5399 (19)164.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯N1i0.979 (19)2.586 (19)3.5399 (19)164.8 (14)

Symmetry code: (i) .

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