Literature DB >> 22719467

3-{[Bis(pyridin-2-ylmeth-yl)amino]-meth-yl}-2-hy-droxy-5-methyl-benz-aldehyde.

Ruo-Xu Wang1, Da-Zhi Gao, Fan Ye, Yan-Fei Wu, Dun-Ru Zhu.   

Abstract

In the title compound, C(21)H(21)N(3)O(2), the pyridine rings and the benzene ring lie in a propeller arrangement around the central tertiary amine N atom. The dihedral angles formed by the benzene ring with the pyridine rings are 61.0 (3) and 49.6 (3)°, while the dihedral angle between the pyridine rings is 69.7 (3)°. The mol-ecular conformation is stabilized by intramolecular bifurcated O-H⋯N hydrogen bonds. In the crystal, inversion dimers are formed via pairs of C-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22719467      PMCID: PMC3379269          DOI: 10.1107/S1600536812019940

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to unsymmetric phenolate compounds, see: Lambert et al. (1997 ▶); Dubois, Xiang et al. (2003 ▶); Dubois, Caspar et al. (2003 ▶); Carlsson et al. (2004 ▶). For the syntheses and structures of related compounds, see: Chirakul et al. (2000 ▶); Abe et al. (2006 ▶); Bortoluzzi et al. (2007 ▶); Koval, Huisman, Stassen, Gamez, Lutz, Spek & Reedijk (2004 ▶); Koval, Huisman, Stassen, Gamez, Lutz, Spek, Pursche et al. (2004 ▶); Koval et al. (2007 ▶); Zhu et al. (2007 ▶). For the synthesis of the title compound, see: Lambert et al. (1997 ▶); Koval et al. (2003 ▶).

Experimental

Crystal data

C21H21N3O2 M = 347.41 Triclinic, a = 8.479 (3) Å b = 9.007 (3) Å c = 12.734 (4) Å α = 107.565 (4)° β = 94.068 (4)° γ = 99.092 (4)° V = 908.2 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.16 × 0.12 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.987, T max = 0.993 6434 measured reflections 3159 independent reflections 2612 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.06 3159 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812019940/rz2747sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019940/rz2747Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019940/rz2747Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21N3O2Z = 2
Mr = 347.41F(000) = 368
Triclinic, P1Dx = 1.270 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.479 (3) ÅCell parameters from 285 reflections
b = 9.007 (3) Åθ = 1.7–26.9°
c = 12.734 (4) ŵ = 0.08 mm1
α = 107.565 (4)°T = 296 K
β = 94.068 (4)°Prism, colourless
γ = 99.092 (4)°0.16 × 0.12 × 0.08 mm
V = 908.2 (5) Å3
Bruker APEXII CCD diffractometer3159 independent reflections
Radiation source: fine-focus sealed tube2612 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→9
Tmin = 0.987, Tmax = 0.993k = −10→9
6434 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.117w = 1/[σ2(Fo2) + (0.0586P)2 + 0.1506P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.002
3159 reflectionsΔρmax = 0.28 e Å3
240 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.30347 (14)0.24261 (15)0.70069 (11)0.0612 (4)
O20.2793 (2)0.4303 (2)0.45307 (13)0.0963 (5)
N10.08654 (17)0.36504 (16)1.11217 (10)0.0500 (3)
N20.44036 (16)0.04369 (16)0.84649 (12)0.0556 (4)
N30.13178 (14)0.13408 (13)0.85047 (9)0.0373 (3)
C10.1725 (2)0.4744 (2)1.20326 (14)0.0619 (5)
H1A0.14220.47551.27220.074*
C20.3018 (2)0.5841 (2)1.20004 (17)0.0672 (5)
H2A0.35860.65681.26520.081*
C30.3457 (2)0.5845 (2)1.09924 (19)0.0677 (5)
H3A0.43310.65781.09440.081*
C40.2591 (2)0.47535 (19)1.00495 (15)0.0544 (4)
H4A0.28650.47470.93540.065*
C50.13093 (17)0.36626 (16)1.01410 (12)0.0386 (3)
C60.5620 (2)−0.0253 (2)0.80858 (17)0.0649 (5)
H6A0.65010.03760.79380.078*
C70.5662 (2)−0.1817 (2)0.79005 (16)0.0644 (5)
H7A0.6543−0.22420.76360.077*
C80.4367 (3)−0.2741 (2)0.81160 (18)0.0719 (6)
H8A0.4350−0.38130.80010.086*
C90.3086 (2)−0.2069 (2)0.85051 (16)0.0599 (5)
H9A0.2190−0.26830.86480.072*
C100.31508 (17)−0.04723 (17)0.86807 (12)0.0400 (3)
C110.03455 (17)0.24405 (18)0.91278 (12)0.0414 (3)
H11A−0.05500.18410.93500.050*
H11B−0.00930.29710.86470.050*
C120.18157 (18)0.03443 (18)0.91383 (12)0.0433 (4)
H12A0.0896−0.04500.91340.052*
H12B0.21700.09960.99030.052*
C130.04151 (18)0.03472 (17)0.74274 (12)0.0426 (4)
H13A−0.0639−0.01270.75450.051*
H13B0.0976−0.05040.70960.051*
C140.02146 (18)0.12748 (17)0.66384 (11)0.0417 (4)
C15−0.1264 (2)0.11424 (19)0.60476 (12)0.0488 (4)
H15A−0.21570.05110.61790.059*
C16−0.1472 (2)0.1916 (2)0.52628 (13)0.0540 (4)
C17−0.0125 (2)0.28009 (19)0.50600 (13)0.0548 (4)
H17A−0.02290.33060.45270.066*
C180.1394 (2)0.29671 (18)0.56266 (12)0.0496 (4)
C190.15547 (19)0.22339 (18)0.64412 (12)0.0447 (4)
C20−0.3128 (3)0.1731 (3)0.46591 (17)0.0776 (6)
H20A−0.30640.23320.41510.116*
H20B−0.38430.21110.51870.116*
H20C−0.35290.06310.42560.116*
C210.2815 (3)0.3831 (2)0.53231 (16)0.0656 (5)
H21A0.37920.40270.57680.079*
H1B0.286 (3)0.207 (3)0.762 (2)0.088 (7)*
U11U22U33U12U13U23
O10.0500 (7)0.0767 (9)0.0618 (8)0.0016 (6)−0.0033 (6)0.0369 (7)
O20.1206 (13)0.1079 (12)0.0805 (10)0.0155 (10)0.0190 (9)0.0608 (10)
N10.0583 (8)0.0525 (8)0.0402 (7)0.0139 (6)0.0080 (6)0.0143 (6)
N20.0447 (8)0.0503 (8)0.0726 (9)0.0084 (6)0.0122 (7)0.0196 (7)
N30.0409 (7)0.0406 (7)0.0325 (6)0.0132 (5)0.0043 (5)0.0118 (5)
C10.0779 (13)0.0663 (12)0.0402 (9)0.0278 (10)0.0011 (8)0.0092 (8)
C20.0591 (12)0.0548 (11)0.0687 (13)0.0207 (9)−0.0150 (9)−0.0082 (9)
C30.0483 (10)0.0476 (10)0.0942 (15)0.0050 (8)0.0077 (10)0.0055 (10)
C40.0536 (10)0.0487 (9)0.0611 (10)0.0094 (8)0.0163 (8)0.0157 (8)
C50.0392 (8)0.0392 (8)0.0411 (8)0.0155 (6)0.0067 (6)0.0139 (6)
C60.0413 (9)0.0742 (12)0.0825 (13)0.0128 (9)0.0133 (9)0.0277 (10)
C70.0553 (11)0.0843 (14)0.0662 (11)0.0374 (10)0.0134 (9)0.0288 (10)
C80.0888 (14)0.0615 (11)0.0865 (14)0.0411 (11)0.0302 (12)0.0363 (11)
C90.0681 (12)0.0514 (10)0.0752 (12)0.0212 (9)0.0267 (9)0.0330 (9)
C100.0412 (8)0.0450 (8)0.0369 (7)0.0104 (6)0.0020 (6)0.0172 (6)
C110.0396 (8)0.0472 (8)0.0389 (8)0.0139 (6)0.0059 (6)0.0126 (6)
C120.0486 (9)0.0467 (8)0.0413 (8)0.0146 (7)0.0100 (7)0.0199 (7)
C130.0441 (8)0.0422 (8)0.0390 (8)0.0079 (6)0.0039 (6)0.0094 (6)
C140.0466 (9)0.0431 (8)0.0316 (7)0.0126 (7)0.0018 (6)0.0050 (6)
C150.0493 (9)0.0521 (9)0.0389 (8)0.0147 (7)0.0011 (7)0.0042 (7)
C160.0635 (11)0.0561 (10)0.0374 (8)0.0255 (8)−0.0058 (7)0.0032 (7)
C170.0792 (13)0.0498 (9)0.0364 (8)0.0240 (9)−0.0012 (8)0.0114 (7)
C180.0666 (11)0.0433 (8)0.0389 (8)0.0148 (8)0.0045 (7)0.0112 (7)
C190.0494 (9)0.0458 (8)0.0369 (8)0.0111 (7)0.0004 (6)0.0102 (7)
C200.0765 (14)0.0919 (15)0.0607 (12)0.0335 (12)−0.0152 (10)0.0153 (11)
C210.0856 (14)0.0608 (11)0.0568 (11)0.0146 (10)0.0119 (10)0.0272 (9)
O1—C191.3607 (19)C9—C101.378 (2)
O1—H1B0.94 (2)C9—H9A0.9300
O2—C211.207 (2)C10—C121.503 (2)
N1—C51.3324 (19)C11—H11A0.9700
N1—C11.346 (2)C11—H11B0.9700
N2—C61.332 (2)C12—H12A0.9700
N2—C101.333 (2)C12—H12B0.9700
N3—C121.4640 (18)C13—C141.505 (2)
N3—C131.4704 (19)C13—H13A0.9700
N3—C111.4719 (18)C13—H13B0.9700
C1—C21.367 (3)C14—C151.384 (2)
C1—H1A0.9300C14—C191.401 (2)
C2—C31.363 (3)C15—C161.396 (2)
C2—H2A0.9300C15—H15A0.9300
C3—C41.372 (3)C16—C171.372 (3)
C3—H3A0.9300C16—C201.512 (2)
C4—C51.382 (2)C17—C181.394 (2)
C4—H4A0.9300C17—H17A0.9300
C5—C111.501 (2)C18—C191.397 (2)
C6—C71.364 (3)C18—C211.469 (3)
C6—H6A0.9300C20—H20A0.9600
C7—C81.365 (3)C20—H20B0.9600
C7—H7A0.9300C20—H20C0.9600
C8—C91.376 (3)C21—H21A0.9300
C8—H8A0.9300
C19—O1—H1B106.1 (14)H11A—C11—H11B107.9
C5—N1—C1117.31 (15)N3—C12—C10112.76 (11)
C6—N2—C10117.32 (15)N3—C12—H12A109.0
C12—N3—C13110.23 (11)C10—C12—H12A109.0
C12—N3—C11111.29 (11)N3—C12—H12B109.0
C13—N3—C11110.37 (11)C10—C12—H12B109.0
N1—C1—C2123.62 (17)H12A—C12—H12B107.8
N1—C1—H1A118.2N3—C13—C14112.35 (12)
C2—C1—H1A118.2N3—C13—H13A109.1
C3—C2—C1118.53 (17)C14—C13—H13A109.1
C3—C2—H2A120.7N3—C13—H13B109.1
C1—C2—H2A120.7C14—C13—H13B109.1
C2—C3—C4119.06 (18)H13A—C13—H13B107.9
C2—C3—H3A120.5C15—C14—C19118.35 (14)
C4—C3—H3A120.5C15—C14—C13121.45 (14)
C3—C4—C5119.49 (17)C19—C14—C13120.11 (13)
C3—C4—H4A120.3C14—C15—C16122.85 (16)
C5—C4—H4A120.3C14—C15—H15A118.6
N1—C5—C4121.98 (14)C16—C15—H15A118.6
N1—C5—C11117.07 (13)C17—C16—C15117.36 (15)
C4—C5—C11120.95 (13)C17—C16—C20122.75 (17)
N2—C6—C7124.44 (17)C15—C16—C20119.87 (18)
N2—C6—H6A117.8C16—C17—C18122.13 (15)
C7—C6—H6A117.8C16—C17—H17A118.9
C6—C7—C8117.75 (16)C18—C17—H17A118.9
C6—C7—H7A121.1C17—C18—C19119.25 (16)
C8—C7—H7A121.1C17—C18—C21120.01 (15)
C7—C8—C9119.36 (17)C19—C18—C21120.66 (16)
C7—C8—H8A120.3O1—C19—C18118.99 (15)
C9—C8—H8A120.3O1—C19—C14121.01 (13)
C8—C9—C10119.11 (17)C18—C19—C14119.96 (15)
C8—C9—H9A120.4C16—C20—H20A109.5
C10—C9—H9A120.4C16—C20—H20B109.5
N2—C10—C9122.01 (14)H20A—C20—H20B109.5
N2—C10—C12116.25 (13)C16—C20—H20C109.5
C9—C10—C12121.74 (14)H20A—C20—H20C109.5
N3—C11—C5112.23 (12)H20B—C20—H20C109.5
N3—C11—H11A109.2O2—C21—C18124.0 (2)
C5—C11—H11A109.2O2—C21—H21A118.0
N3—C11—H11B109.2C18—C21—H21A118.0
C5—C11—H11B109.2
D—H···AD—HH···AD···AD—H···A
O1—H1B···N20.94 (3)2.53 (3)3.219 (2)130 (2)
O1—H1B···N30.94 (3)1.95 (3)2.790 (2)148 (2)
C3—H3A···N2i0.932.593.390 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯N20.94 (3)2.53 (3)3.219 (2)130 (2)
O1—H1B⋯N30.94 (3)1.95 (3)2.790 (2)148 (2)
C3—H3A⋯N2i0.932.593.390 (3)145

Symmetry code: (i) .

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