Literature DB >> 22719460

N-[4-(4-Bromo-phen-yl)thia-zol-2-yl]-4-(piperidin-1-yl)butanamide.

Hazem A Ghabbour, Adnan A Kadi, Hussein I El-Subbagh, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

In the title compound, C(18)H(22)BrN(3)OS, the piperidine ring adopts a chair conformation. The mean plane of the thia-zole ring forms dihedral angles of 23.97 (10) and 75.82 (10)° with the mean planes of its adjacent benzene and piperidine rings, respectively. An intra-molecular N-H⋯N hydrogen bond generates an S(7) ring motif in the mol-ecule. In the crystal, no significant inter-moelcular hydrogen bonds are observed, but a weak π-π inter-action with a centroid-centroid distance of 3.8855 (13) Å occurs.

Entities:  

Year:  2012        PMID: 22719460      PMCID: PMC3379262          DOI: 10.1107/S1600536812019204

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of 2-amino­thia­zole derivatives, see: Lednicer & Mitscher (1977 ▶); Vagdevi et al. (2006 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For further synthetic details, see: El-Subbagh et al. (1999 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C18H22BrN3OS M = 408.36 Triclinic, a = 6.8276 (7) Å b = 9.2782 (9) Å c = 14.5907 (14) Å α = 88.812 (2)° β = 86.085 (3)° γ = 75.394 (2)° V = 892.33 (15) Å3 Z = 2 Mo Kα radiation μ = 2.43 mm−1 T = 100 K 0.37 × 0.14 × 0.05 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.467, T max = 0.890 17762 measured reflections 5019 independent reflections 4117 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.114 S = 1.07 5019 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.80 e Å−3 Δρmin = −0.86 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019204/hb6767sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019204/hb6767Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019204/hb6767Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22BrN3OSZ = 2
Mr = 408.36F(000) = 420
Triclinic, P1Dx = 1.520 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8276 (7) ÅCell parameters from 5955 reflections
b = 9.2782 (9) Åθ = 3.1–29.8°
c = 14.5907 (14) ŵ = 2.43 mm1
α = 88.812 (2)°T = 100 K
β = 86.085 (3)°Plate, colourless
γ = 75.394 (2)°0.37 × 0.14 × 0.05 mm
V = 892.33 (15) Å3
Bruker APEX DUO CCD area-detector diffractometer5019 independent reflections
Radiation source: fine-focus sealed tube4117 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ and ω scansθmax = 29.9°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.467, Tmax = 0.890k = −12→12
17762 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0683P)2 + 0.091P] where P = (Fo2 + 2Fc2)/3
5019 reflections(Δ/σ)max = 0.001
221 parametersΔρmax = 1.80 e Å3
0 restraintsΔρmin = −0.86 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.82800 (4)0.81297 (2)0.549438 (15)0.02561 (9)
S10.28942 (9)0.30257 (5)0.19656 (4)0.01885 (13)
O1−0.0331 (3)0.31993 (16)0.09887 (11)0.0220 (4)
N10.2084 (3)0.56893 (18)0.26349 (12)0.0153 (3)
N2−0.0331 (3)0.54008 (18)0.16321 (12)0.0154 (4)
N3−0.2166 (3)0.83694 (18)0.14310 (12)0.0154 (4)
C10.3846 (4)0.6922 (2)0.40953 (15)0.0197 (4)
H1A0.24290.72880.40380.024*
C20.4825 (4)0.7643 (2)0.46664 (15)0.0221 (5)
H2A0.40830.84900.50070.027*
C30.6911 (4)0.7117 (2)0.47378 (15)0.0187 (4)
C40.8022 (4)0.5877 (2)0.42470 (14)0.0191 (4)
H4A0.94450.55320.42940.023*
C50.7013 (4)0.5153 (2)0.36861 (14)0.0180 (4)
H5A0.77600.42980.33540.022*
C60.4927 (3)0.5654 (2)0.35987 (13)0.0142 (4)
C70.3892 (3)0.4898 (2)0.29872 (14)0.0155 (4)
C80.4539 (4)0.3451 (2)0.26968 (15)0.0197 (4)
H8A0.57410.27700.28760.024*
C90.1412 (3)0.4853 (2)0.20874 (14)0.0146 (4)
C10−0.1143 (4)0.4531 (2)0.11071 (13)0.0154 (4)
C11−0.3088 (4)0.5259 (2)0.06591 (15)0.0177 (4)
H11A−0.39450.45410.06980.021*
H11B−0.27250.5386−0.00010.021*
C12−0.4417 (4)0.6759 (2)0.10078 (15)0.0189 (4)
H12A−0.57640.69170.07540.023*
H12B−0.46210.66980.16840.023*
C13−0.3601 (4)0.8121 (2)0.07711 (15)0.0190 (4)
H13A−0.29070.79930.01490.023*
H13B−0.47540.90150.07580.023*
C14−0.3271 (4)0.9117 (2)0.22672 (15)0.0189 (4)
H14A−0.41430.85030.25530.023*
H14B−0.41581.00920.20980.023*
C15−0.1798 (4)0.9352 (2)0.29574 (15)0.0231 (5)
H15A−0.10060.83730.31720.028*
H15B−0.25730.98970.34970.028*
C16−0.0344 (4)1.0234 (2)0.25308 (16)0.0231 (5)
H16A−0.11061.12680.24020.028*
H16B0.06911.02720.29670.028*
C170.0692 (4)0.9490 (2)0.16389 (16)0.0211 (5)
H17A0.15181.01200.13320.025*
H17B0.16130.85150.17820.025*
C18−0.0854 (4)0.9263 (2)0.09965 (15)0.0195 (4)
H18A−0.17011.02440.08140.023*
H18B−0.01400.87540.04340.023*
H1N2−0.083 (5)0.643 (3)0.163 (2)0.031 (8)*
U11U22U33U12U13U23
Br10.02680 (16)0.02875 (14)0.02536 (13)−0.01282 (10)−0.00715 (10)−0.00372 (9)
S10.0190 (3)0.0121 (2)0.0252 (3)−0.0019 (2)−0.0067 (2)−0.00195 (18)
O10.0235 (9)0.0153 (7)0.0278 (8)−0.0044 (7)−0.0060 (7)−0.0037 (6)
N10.0127 (9)0.0143 (7)0.0193 (8)−0.0041 (7)−0.0024 (7)−0.0009 (6)
N20.0123 (9)0.0126 (7)0.0220 (8)−0.0037 (7)−0.0043 (7)−0.0018 (6)
N30.0147 (9)0.0136 (7)0.0187 (8)−0.0050 (7)−0.0002 (7)−0.0003 (6)
C10.0156 (11)0.0191 (9)0.0237 (10)−0.0031 (9)−0.0020 (8)−0.0008 (8)
C20.0205 (12)0.0209 (9)0.0248 (10)−0.0050 (9)−0.0012 (9)−0.0036 (8)
C30.0215 (12)0.0210 (9)0.0175 (9)−0.0117 (9)−0.0053 (8)0.0019 (7)
C40.0167 (11)0.0223 (9)0.0199 (9)−0.0070 (9)−0.0053 (8)0.0029 (8)
C50.0172 (11)0.0184 (9)0.0187 (9)−0.0049 (8)−0.0020 (8)0.0003 (7)
C60.0145 (10)0.0143 (8)0.0156 (8)−0.0062 (8)−0.0038 (8)0.0018 (7)
C70.0125 (10)0.0161 (8)0.0181 (9)−0.0043 (8)−0.0004 (8)0.0022 (7)
C80.0170 (12)0.0169 (9)0.0247 (10)−0.0022 (8)−0.0061 (9)0.0004 (7)
C90.0133 (10)0.0131 (8)0.0178 (8)−0.0044 (8)−0.0001 (8)0.0008 (6)
C100.0151 (11)0.0169 (8)0.0160 (8)−0.0076 (8)0.0003 (8)0.0000 (7)
C110.0147 (11)0.0174 (9)0.0225 (9)−0.0064 (8)−0.0031 (8)−0.0014 (7)
C120.0158 (11)0.0190 (9)0.0222 (10)−0.0043 (8)−0.0036 (8)−0.0011 (7)
C130.0168 (11)0.0171 (9)0.0240 (10)−0.0050 (8)−0.0053 (9)0.0017 (7)
C140.0178 (11)0.0163 (9)0.0226 (10)−0.0061 (8)0.0050 (9)−0.0026 (7)
C150.0300 (14)0.0195 (9)0.0209 (10)−0.0090 (10)0.0031 (9)−0.0032 (8)
C160.0243 (13)0.0198 (9)0.0269 (11)−0.0087 (9)−0.0015 (9)−0.0039 (8)
C170.0156 (11)0.0171 (9)0.0322 (11)−0.0075 (8)0.0013 (9)−0.0029 (8)
C180.0193 (12)0.0190 (9)0.0218 (9)−0.0088 (9)0.0022 (8)−0.0003 (7)
Br1—C31.898 (2)C8—H8A0.9500
S1—C81.720 (2)C10—C111.515 (3)
S1—C91.7473 (19)C11—C121.533 (3)
O1—C101.231 (2)C11—H11A0.9900
N1—C91.306 (3)C11—H11B0.9900
N1—C71.393 (3)C12—C131.529 (3)
N2—C101.362 (3)C12—H12A0.9900
N2—C91.380 (3)C12—H12B0.9900
N2—H1N20.93 (3)C13—H13A0.9900
N3—C181.472 (3)C13—H13B0.9900
N3—C141.478 (3)C14—C151.527 (4)
N3—C131.480 (3)C14—H14A0.9900
C1—C21.383 (3)C14—H14B0.9900
C1—C61.407 (3)C15—C161.532 (4)
C1—H1A0.9500C15—H15A0.9900
C2—C31.394 (4)C15—H15B0.9900
C2—H2A0.9500C16—C171.528 (3)
C3—C41.390 (3)C16—H16A0.9900
C4—C51.389 (3)C16—H16B0.9900
C4—H4A0.9500C17—C181.514 (3)
C5—C61.396 (3)C17—H17A0.9900
C5—H5A0.9500C17—H17B0.9900
C6—C71.466 (3)C18—H18A0.9900
C7—C81.369 (3)C18—H18B0.9900
C8—S1—C988.45 (10)H11A—C11—H11B106.9
C9—N1—C7110.70 (17)C13—C12—C11116.0 (2)
C10—N2—C9122.88 (17)C13—C12—H12A108.3
C10—N2—H1N2121 (2)C11—C12—H12A108.3
C9—N2—H1N2116 (2)C13—C12—H12B108.3
C18—N3—C14110.36 (17)C11—C12—H12B108.3
C18—N3—C13109.99 (17)H12A—C12—H12B107.4
C14—N3—C13110.74 (18)N3—C13—C12113.05 (17)
C2—C1—C6120.7 (2)N3—C13—H13A109.0
C2—C1—H1A119.7C12—C13—H13A109.0
C6—C1—H1A119.7N3—C13—H13B109.0
C1—C2—C3119.5 (2)C12—C13—H13B109.0
C1—C2—H2A120.3H13A—C13—H13B107.8
C3—C2—H2A120.3N3—C14—C15110.96 (19)
C4—C3—C2121.1 (2)N3—C14—H14A109.4
C4—C3—Br1119.07 (19)C15—C14—H14A109.4
C2—C3—Br1119.76 (17)N3—C14—H14B109.4
C5—C4—C3118.7 (2)C15—C14—H14B109.4
C5—C4—H4A120.6H14A—C14—H14B108.0
C3—C4—H4A120.6C14—C15—C16111.38 (19)
C4—C5—C6121.5 (2)C14—C15—H15A109.4
C4—C5—H5A119.2C16—C15—H15A109.4
C6—C5—H5A119.2C14—C15—H15B109.4
C5—C6—C1118.5 (2)C16—C15—H15B109.4
C5—C6—C7120.87 (18)H15A—C15—H15B108.0
C1—C6—C7120.6 (2)C17—C16—C15109.71 (19)
C8—C7—N1114.3 (2)C17—C16—H16A109.7
C8—C7—C6126.45 (19)C15—C16—H16A109.7
N1—C7—C6119.23 (17)C17—C16—H16B109.7
C7—C8—S1111.31 (17)C15—C16—H16B109.7
C7—C8—H8A124.3H16A—C16—H16B108.2
S1—C8—H8A124.3C18—C17—C16111.1 (2)
N1—C9—N2121.60 (17)C18—C17—H17A109.4
N1—C9—S1115.24 (16)C16—C17—H17A109.4
N2—C9—S1123.16 (15)C18—C17—H17B109.4
O1—C10—N2121.7 (2)C16—C17—H17B109.4
O1—C10—C11120.4 (2)H17A—C17—H17B108.0
N2—C10—C11117.80 (17)N3—C18—C17111.59 (18)
C10—C11—C12120.40 (18)N3—C18—H18A109.3
C10—C11—H11A107.2C17—C18—H18A109.3
C12—C11—H11A107.2N3—C18—H18B109.3
C10—C11—H11B107.2C17—C18—H18B109.3
C12—C11—H11B107.2H18A—C18—H18B108.0
C6—C1—C2—C31.0 (3)C10—N2—C9—N1−175.4 (2)
C1—C2—C3—C4−0.2 (3)C10—N2—C9—S15.7 (3)
C1—C2—C3—Br1178.34 (17)C8—S1—C9—N1−0.78 (18)
C2—C3—C4—C5−0.7 (3)C8—S1—C9—N2178.24 (19)
Br1—C3—C4—C5−179.21 (16)C9—N2—C10—O1−1.9 (3)
C3—C4—C5—C60.8 (3)C9—N2—C10—C11178.70 (19)
C4—C5—C6—C10.0 (3)O1—C10—C11—C12162.6 (2)
C4—C5—C6—C7178.56 (19)N2—C10—C11—C12−18.0 (3)
C2—C1—C6—C5−0.9 (3)C10—C11—C12—C1373.2 (3)
C2—C1—C6—C7−179.45 (19)C18—N3—C13—C12157.54 (18)
C9—N1—C7—C8−0.6 (3)C14—N3—C13—C12−80.2 (2)
C9—N1—C7—C6178.28 (19)C11—C12—C13—N3−84.7 (2)
C5—C6—C7—C823.5 (3)C18—N3—C14—C15−58.9 (2)
C1—C6—C7—C8−158.0 (2)C13—N3—C14—C15179.05 (17)
C5—C6—C7—N1−155.2 (2)N3—C14—C15—C1656.3 (2)
C1—C6—C7—N123.3 (3)C14—C15—C16—C17−52.9 (3)
N1—C7—C8—S10.0 (3)C15—C16—C17—C1853.2 (2)
C6—C7—C8—S1−178.77 (17)C14—N3—C18—C1759.7 (2)
C9—S1—C8—C70.39 (18)C13—N3—C18—C17−177.78 (17)
C7—N1—C9—N2−178.11 (19)C16—C17—C18—N3−57.3 (2)
C7—N1—C9—S10.9 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···N30.93 (3)1.83 (3)2.742 (2)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯N30.93 (3)1.83 (3)2.742 (2)167 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Disubstituted thiazoles, Part III. Synthesis and antitumor activity of ethyl 2-substituted-aminothiazole-4-carboxylate analogs.

Authors:  H I el-Subbagh; A H Abadi; J Lehmann
Journal:  Arch Pharm (Weinheim)       Date:  1999-04       Impact factor: 3.751

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  [2-(Biphenyl-4-yl)-1,3-thia-zol-4-yl]methanol.

Authors:  Manpreet Kaur; Jerry P Jasinski; Amanda C Keeley; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-19
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.