Literature DB >> 22719436

3,3'-[1,2-Phenyl-enebis(methyl-ene)]bis-(1-ethyl-1H-benzimidazol-1-ium) bis-(hexa-flourophosphate).

Rosenani A Haque, Muhammad Adnan Iqbal, Mohd Mustaqim Rosli, Hoong-Kun Fun.   

Abstract

In the title compound, C(26)H(28)N(4) (2+)·2PF(6) (-), the complete cation is generated by a crystallographic twofold axis. The benz-imidazole ring is almost planar (r.m.s. deviation = 0.0207 Å) and makes dihedral angles of 50.12 (2)° with its symmetry-related component and 65.81 (2)° with the central benzene ring. In the crystal, mol-ecules are linked into a three-dimensional network by C-H⋯F inter-actions. A π-π inter-action with a centroid-centroid distance of 3.530 (1) Å is observed. Four F atoms of the hexa-fluoro-phosphate anion are disordered over two sets of sites in a 0.889 (6):0.111 (6) ratio.

Entities:  

Year:  2012        PMID: 22719436      PMCID: PMC3379238          DOI: 10.1107/S1600536812019344

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological applications of benzimidazoles, see: Narasimhan et al. (2012 ▶). For a related structure, see: Haque et al. (2012 ▶).

Experimental

Crystal data

C26H28N4 2+·2PF6 − M = 686.46 Monoclinic, a = 23.2016 (5) Å b = 8.1526 (2) Å c = 16.9992 (4) Å β = 121.274 (1)° V = 2748.23 (11) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.26 × 0.26 × 0.14 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.933, T max = 0.963 14787 measured reflections 3921 independent reflections 3156 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.098 S = 1.05 3921 reflections 217 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812019344/hb6760sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019344/hb6760Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H28N42+·2PF6F(000) = 1400
Mr = 686.46Dx = 1.659 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3899 reflections
a = 23.2016 (5) Åθ = 2.5–29.7°
b = 8.1526 (2) ŵ = 0.27 mm1
c = 16.9992 (4) ÅT = 100 K
β = 121.274 (1)°Block, colourless
V = 2748.23 (11) Å30.26 × 0.26 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3921 independent reflections
Radiation source: fine-focus sealed tube3156 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 29.8°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −32→31
Tmin = 0.933, Tmax = 0.963k = −11→9
14787 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0339P)2 + 4.2095P] where P = (Fo2 + 2Fc2)/3
3921 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.89811 (2)0.80829 (6)0.89390 (3)0.01579 (11)
F50.84112 (5)0.94532 (13)0.83897 (7)0.0220 (2)
F60.95467 (6)0.67136 (15)0.94831 (8)0.0323 (3)
F10.95400 (8)0.92423 (17)0.89472 (17)0.0309 (5)0.889 (6)
F20.91321 (10)0.8889 (2)0.98909 (10)0.0303 (5)0.889 (6)
F30.84260 (11)0.6929 (2)0.8940 (2)0.0311 (5)0.889 (6)
F40.88302 (12)0.7290 (2)0.79927 (10)0.0314 (5)0.889 (6)
F1A0.9350 (7)0.9043 (15)0.8457 (11)0.024 (3)*0.111 (6)
F2A0.9323 (8)0.9133 (18)0.9770 (10)0.032 (4)*0.111 (6)
F4A0.8573 (8)0.7032 (18)0.7950 (10)0.029 (3)*0.111 (6)
F3A0.8547 (9)0.713 (2)0.9237 (11)0.024 (4)*0.111 (6)
N10.16728 (7)0.66335 (17)1.09095 (9)0.0146 (3)
N20.10920 (7)0.67626 (18)0.94040 (9)0.0154 (3)
C10.10867 (8)0.7060 (2)1.01737 (11)0.0157 (3)
H1A0.07170.75131.01920.019*
C20.20844 (8)0.5997 (2)1.06084 (11)0.0142 (3)
C30.27289 (8)0.5312 (2)1.10913 (12)0.0174 (3)
H3A0.29820.52541.17440.021*
C40.29766 (9)0.4723 (2)1.05606 (13)0.0206 (4)
H4A0.34100.42261.08590.025*
C50.26085 (9)0.4833 (2)0.95923 (13)0.0212 (4)
H5A0.28020.44240.92570.025*
C60.19723 (9)0.5525 (2)0.91211 (12)0.0174 (3)
H6A0.17230.56100.84690.021*
C70.17168 (8)0.6091 (2)0.96517 (11)0.0150 (3)
C80.05184 (8)0.6967 (2)0.84619 (11)0.0163 (3)
H8A0.06630.76240.81050.020*
H8B0.01570.75820.84800.020*
C90.02370 (8)0.5336 (2)0.79767 (11)0.0151 (3)
C100.04406 (8)0.3851 (2)0.84445 (12)0.0178 (3)
H10A0.07400.38450.90930.021*
C110.02104 (9)0.2372 (2)0.79734 (12)0.0200 (4)
H11A0.03420.13640.83010.024*
C120.18631 (9)0.6741 (2)1.18835 (11)0.0186 (3)
H12A0.21760.76751.21790.022*
H12B0.21040.57271.22080.022*
C130.12542 (9)0.6968 (2)1.19816 (13)0.0212 (4)
H13A0.14020.70151.26360.032*
H13B0.09440.60441.16920.032*
H13C0.10240.79921.16810.032*
U11U22U33U12U13U23
P10.0129 (2)0.0162 (2)0.0174 (2)0.00054 (16)0.00725 (17)0.00099 (17)
F50.0197 (5)0.0208 (5)0.0221 (5)0.0054 (4)0.0084 (4)0.0053 (4)
F60.0233 (6)0.0279 (6)0.0390 (7)0.0116 (5)0.0115 (5)0.0080 (5)
F10.0212 (8)0.0261 (7)0.0505 (14)−0.0047 (6)0.0224 (9)−0.0001 (7)
F20.0303 (9)0.0381 (9)0.0169 (6)0.0070 (7)0.0083 (6)−0.0039 (6)
F30.0263 (9)0.0207 (8)0.0519 (15)−0.0042 (7)0.0244 (11)0.0045 (10)
F40.0382 (11)0.0331 (9)0.0228 (7)0.0058 (8)0.0157 (7)−0.0062 (6)
N10.0127 (6)0.0161 (7)0.0134 (6)0.0006 (5)0.0056 (5)−0.0010 (5)
N20.0112 (6)0.0185 (7)0.0137 (6)0.0007 (5)0.0044 (5)−0.0010 (6)
C10.0122 (7)0.0179 (8)0.0151 (7)0.0008 (6)0.0057 (6)−0.0011 (6)
C20.0126 (7)0.0133 (7)0.0157 (7)−0.0015 (6)0.0067 (6)−0.0014 (6)
C30.0132 (8)0.0175 (8)0.0175 (8)0.0002 (6)0.0051 (7)0.0007 (7)
C40.0131 (8)0.0216 (9)0.0238 (9)0.0034 (7)0.0074 (7)0.0021 (7)
C50.0198 (9)0.0219 (9)0.0268 (9)0.0000 (7)0.0155 (8)−0.0023 (8)
C60.0168 (8)0.0189 (8)0.0161 (8)−0.0025 (6)0.0082 (7)−0.0023 (7)
C70.0112 (7)0.0142 (8)0.0165 (8)−0.0017 (6)0.0050 (6)−0.0009 (6)
C80.0117 (7)0.0202 (8)0.0114 (7)−0.0004 (6)0.0022 (6)0.0006 (6)
C90.0102 (7)0.0201 (8)0.0143 (8)−0.0008 (6)0.0059 (6)−0.0009 (6)
C100.0117 (8)0.0235 (9)0.0147 (8)−0.0010 (6)0.0045 (6)0.0018 (7)
C110.0146 (8)0.0191 (8)0.0227 (9)0.0014 (6)0.0072 (7)0.0042 (7)
C120.0193 (8)0.0216 (9)0.0121 (7)0.0021 (7)0.0062 (7)−0.0011 (7)
C130.0260 (9)0.0195 (9)0.0227 (9)0.0017 (7)0.0158 (8)0.0017 (7)
P1—F2A1.481 (14)C4—C51.410 (3)
P1—F3A1.552 (19)C4—H4A0.9500
P1—F41.5947 (14)C5—C61.382 (2)
P1—F31.5957 (18)C5—H5A0.9500
P1—F11.5987 (13)C6—C71.390 (2)
P1—F61.6011 (12)C6—H6A0.9500
P1—F21.6077 (15)C8—C91.522 (2)
P1—F51.6082 (11)C8—H8A0.9900
P1—F1A1.656 (11)C8—H8B0.9900
P1—F4A1.674 (14)C9—C101.390 (2)
N1—C11.330 (2)C9—C9i1.409 (3)
N1—C21.397 (2)C10—C111.391 (3)
N1—C121.478 (2)C10—H10A0.9500
N2—C11.337 (2)C11—C11i1.383 (3)
N2—C71.395 (2)C11—H11A0.9500
N2—C81.467 (2)C12—C131.518 (2)
C1—H1A0.9500C12—H12A0.9900
C2—C71.392 (2)C12—H12B0.9900
C2—C31.395 (2)C13—H13A0.9800
C3—C41.383 (2)C13—H13B0.9800
C3—H3A0.9500C13—H13C0.9800
F2A—P1—F3A95.5 (8)N1—C1—H1A124.8
F2A—P1—F4157.6 (7)N2—C1—H1A124.8
F3A—P1—F4106.7 (6)C7—C2—C3121.92 (15)
F2A—P1—F3111.9 (7)C7—C2—N1106.67 (14)
F4—P1—F390.44 (11)C3—C2—N1131.37 (15)
F2A—P1—F167.6 (7)C4—C3—C2115.88 (16)
F3A—P1—F1162.7 (6)C4—C3—H3A122.1
F4—P1—F190.05 (9)C2—C3—H3A122.1
F3—P1—F1179.50 (11)C3—C4—C5122.29 (16)
F2A—P1—F688.8 (6)C3—C4—H4A118.9
F3A—P1—F686.5 (7)C5—C4—H4A118.9
F4—P1—F689.14 (8)C6—C5—C4121.35 (16)
F3—P1—F690.47 (9)C6—C5—H5A119.3
F1—P1—F689.39 (7)C4—C5—H5A119.3
F3A—P1—F273.4 (6)C5—C6—C7116.48 (16)
F4—P1—F2179.76 (10)C5—C6—H6A121.8
F3—P1—F289.66 (11)C7—C6—H6A121.8
F1—P1—F289.86 (9)C6—C7—C2122.06 (15)
F6—P1—F291.07 (7)C6—C7—N2131.37 (16)
F2A—P1—F591.4 (6)C2—C7—N2106.53 (14)
F3A—P1—F593.4 (7)N2—C8—C9112.54 (14)
F4—P1—F590.69 (7)N2—C8—H8A109.1
F3—P1—F589.39 (9)C9—C8—H8A109.1
F1—P1—F590.75 (7)N2—C8—H8B109.1
F6—P1—F5179.78 (9)C9—C8—H8B109.1
F2—P1—F589.10 (7)H8A—C8—H8B107.8
F2A—P1—F1A92.3 (7)C10—C9—C9i119.25 (10)
F3A—P1—F1A171.2 (7)C10—C9—C8121.89 (14)
F4—P1—F1A65.9 (5)C9i—C9—C8118.85 (9)
F3—P1—F1A154.6 (5)C9—C10—C11120.70 (15)
F6—P1—F1A97.8 (4)C9—C10—H10A119.6
F2—P1—F1A114.0 (5)C11—C10—H10A119.7
F5—P1—F1A82.2 (4)C11i—C11—C10119.87 (10)
F2A—P1—F4A175.5 (8)C11i—C11—H11A120.1
F3A—P1—F4A86.9 (7)C10—C11—H11A120.1
F3—P1—F4A70.3 (5)N1—C12—C13112.13 (14)
F1—P1—F4A110.2 (5)N1—C12—H12A109.2
F6—P1—F4A95.2 (5)C13—C12—H12A109.2
F2—P1—F4A159.0 (6)N1—C12—H12B109.2
F5—P1—F4A84.6 (5)C13—C12—H12B109.2
F1A—P1—F4A85.1 (6)H12A—C12—H12B107.9
C1—N1—C2108.21 (13)C12—C13—H13A109.5
C1—N1—C12127.07 (14)C12—C13—H13B109.5
C2—N1—C12124.68 (14)H13A—C13—H13B109.5
C1—N2—C7108.18 (14)C12—C13—H13C109.5
C1—N2—C8125.72 (14)H13A—C13—H13C109.5
C7—N2—C8125.88 (14)H13B—C13—H13C109.5
N1—C1—N2110.39 (14)
C2—N1—C1—N2−0.89 (19)N1—C2—C7—C6−178.67 (15)
C12—N1—C1—N2−178.83 (15)C3—C2—C7—N2177.24 (15)
C7—N2—C1—N10.45 (19)N1—C2—C7—N2−0.69 (18)
C8—N2—C1—N1175.33 (15)C1—N2—C7—C6177.89 (18)
C1—N1—C2—C70.97 (18)C8—N2—C7—C63.0 (3)
C12—N1—C2—C7178.98 (15)C1—N2—C7—C20.18 (18)
C1—N1—C2—C3−176.69 (18)C8—N2—C7—C2−174.70 (15)
C12—N1—C2—C31.3 (3)C1—N2—C8—C9−109.15 (18)
C7—C2—C3—C4−0.5 (2)C7—N2—C8—C964.8 (2)
N1—C2—C3—C4176.88 (17)N2—C8—C9—C109.8 (2)
C2—C3—C4—C51.2 (3)N2—C8—C9—C9i−169.32 (17)
C3—C4—C5—C6−0.8 (3)C9i—C9—C10—C113.6 (3)
C4—C5—C6—C7−0.4 (3)C8—C9—C10—C11−175.57 (16)
C5—C6—C7—C21.2 (3)C9—C10—C11—C11i1.8 (3)
C5—C6—C7—N2−176.25 (17)C1—N1—C12—C1315.8 (2)
C3—C2—C7—C6−0.7 (3)C2—N1—C12—C13−161.87 (15)
D—H···AD—HH···AD···AD—H···A
C1—H1A···F6ii0.952.423.142 (3)133
C3—H3A···F5iii0.952.453.374 (2)166
C5—H5A···F5iv0.952.523.420 (3)159
C6—H6A···F4v0.952.533.392 (2)151
C8—H8B···F1ii0.992.393.350 (3)164
C13—H13C···F1vi0.982.553.523 (2)174
C13—H13C···F5vi0.982.503.166 (2)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯F6i0.952.423.142 (3)133
C3—H3A⋯F5ii0.952.453.374 (2)166
C5—H5A⋯F5iii0.952.523.420 (3)159
C6—H6A⋯F4iv0.952.533.392 (2)151
C8—H8B⋯F1i0.992.393.350 (3)164
C13—H13C⋯F1v0.982.553.523 (2)174
C13—H13C⋯F5v0.982.503.166 (2)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Rosenani A Haque; Muhammad Adnan Iqbal; Hoong-Kun Fun; Suhana Arshad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

3.  Structure validation in chemical crystallography.

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