Literature DB >> 22719424

2,5-Bis[(3-chloro-benz-yl)sulfan-yl]-1,3,4-thia-diazole.

Na-Bo Sun1, Jian-Zhong Jin, Wei Ke.   

Abstract

The complete mol-ecule of the title compound, C(16)H(12)Cl(2)N(2)S(3), is generated by crystallographic twofold symmetry, with the S atom of the thiadiazole ring lying on the rotation axis. The dihedral angle between the mean planes of the 1,3,4-thia-diazole and benzene rings is 87.19 (7)°. In the crystal, mol-ecules are linked by C-H⋯N inter-actions and short S⋯S contacts [3.3389 (9) Å] occur.

Entities:  

Year:  2012        PMID: 22719424      PMCID: PMC3379226          DOI: 10.1107/S1600536812019150

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Liu et al. (2012 ▶); Tan et al. (2012 ▶). For a related structure, see: Liu & Liu (2011 ▶. For the biological activity of related compounds, see: Liu et al. (2011a ▶,b ▶).

Experimental

Crystal data

C16H12Cl2N2S3 M = 399.36 Monoclinic, a = 17.200 (3) Å b = 5.6604 (11) Å c = 17.524 (4) Å β = 92.56 (3)° V = 1704.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.75 mm−1 T = 113 K 0.12 × 0.10 × 0.06 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.916, T max = 0.957 5343 measured reflections 1491 independent reflections 1382 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.063 S = 1.17 1491 reflections 105 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear (Rigaku/MSC, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019150/hb6758sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019150/hb6758Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019150/hb6758Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12Cl2N2S3F(000) = 816
Mr = 399.36Dx = 1.556 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 17.200 (3) ÅCell parameters from 2634 reflections
b = 5.6604 (11) Åθ = 3.3–27.9°
c = 17.524 (4) ŵ = 0.75 mm1
β = 92.56 (3)°T = 113 K
V = 1704.4 (6) Å3Block, colorless
Z = 40.12 × 0.10 × 0.06 mm
Rigaku Saturn CCD diffractometer1491 independent reflections
Radiation source: rotating anode1382 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.028
ω scansθmax = 25.0°, θmin = 3.3°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)h = −20→20
Tmin = 0.916, Tmax = 0.957k = −6→6
5343 measured reflectionsl = −14→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.063H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0254P)2 + 1.1171P] where P = (Fo2 + 2Fc2)/3
1491 reflections(Δ/σ)max = 0.001
105 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.03445 (2)−0.05340 (7)0.41412 (2)0.01769 (13)
S20.00000.13382 (10)0.25000.01979 (16)
Cl10.36343 (2)−0.14225 (8)0.42335 (3)0.03039 (14)
N10.01164 (7)−0.3031 (2)0.28829 (7)0.0161 (3)
C10.22023 (9)0.0583 (3)0.41728 (9)0.0198 (3)
H10.2061−0.05990.45080.024*
C20.29495 (9)0.0682 (3)0.39189 (9)0.0206 (4)
C30.31795 (9)0.2422 (3)0.34242 (9)0.0255 (4)
H30.36870.24640.32630.031*
C40.26429 (10)0.4097 (3)0.31736 (10)0.0284 (4)
H40.27890.52780.28400.034*
C50.18844 (10)0.4023 (3)0.34188 (9)0.0232 (4)
H50.15250.51500.32450.028*
C60.16605 (9)0.2277 (3)0.39205 (8)0.0171 (3)
C70.08449 (9)0.2289 (3)0.42062 (9)0.0190 (3)
H7A0.05400.34480.39160.023*
H7B0.08690.27930.47360.023*
C80.01873 (8)−0.0905 (3)0.31589 (8)0.0136 (3)
U11U22U33U12U13U23
S10.0171 (2)0.0229 (2)0.0129 (2)−0.00199 (16)−0.00114 (15)0.00075 (15)
S20.0314 (3)0.0127 (3)0.0149 (3)0.000−0.0042 (2)0.000
Cl10.0197 (2)0.0303 (3)0.0404 (3)0.00735 (18)−0.00680 (18)0.00062 (19)
N10.0158 (6)0.0171 (7)0.0153 (6)−0.0004 (6)0.0002 (5)0.0007 (5)
C10.0191 (8)0.0213 (8)0.0187 (8)−0.0008 (7)−0.0024 (6)−0.0009 (7)
C20.0169 (8)0.0213 (8)0.0230 (8)0.0029 (7)−0.0063 (6)−0.0050 (7)
C30.0143 (8)0.0314 (10)0.0308 (9)−0.0037 (7)0.0006 (7)−0.0027 (8)
C40.0230 (10)0.0274 (10)0.0348 (10)−0.0044 (8)0.0018 (7)0.0074 (8)
C50.0198 (9)0.0204 (9)0.0289 (9)0.0020 (7)−0.0031 (7)0.0004 (7)
C60.0153 (8)0.0201 (8)0.0156 (7)−0.0020 (7)−0.0030 (6)−0.0070 (6)
C70.0166 (8)0.0214 (8)0.0190 (8)−0.0002 (7)−0.0009 (6)−0.0061 (7)
C80.0096 (7)0.0164 (8)0.0149 (8)0.0001 (6)0.0006 (6)0.0018 (6)
S1—C81.7432 (15)C2—C31.382 (2)
S1—C71.8161 (17)C3—C41.381 (2)
S2—C8i1.7367 (15)C3—H30.9300
S2—C81.7368 (15)C4—C51.392 (2)
Cl1—C21.7471 (17)C4—H40.9300
N1—C81.301 (2)C5—C61.389 (2)
N1—N1i1.383 (2)C5—H50.9300
C1—C21.380 (2)C6—C71.511 (2)
C1—C61.395 (2)C7—H7A0.9700
C1—H10.9300C7—H7B0.9700
C8—S1—C7102.72 (7)C6—C5—C4120.47 (16)
C8i—S2—C886.03 (10)C6—C5—H5119.8
C8—N1—N1i112.28 (8)C4—C5—H5119.8
C2—C1—C6119.25 (15)C5—C6—C1119.31 (15)
C2—C1—H1120.4C5—C6—C7119.64 (15)
C6—C1—H1120.4C1—C6—C7121.02 (14)
C1—C2—C3121.89 (15)C6—C7—S1114.82 (11)
C1—C2—Cl1119.68 (13)C6—C7—H7A108.6
C3—C2—Cl1118.43 (13)S1—C7—H7A108.6
C4—C3—C2118.87 (15)C6—C7—H7B108.6
C4—C3—H3120.6S1—C7—H7B108.6
C2—C3—H3120.6H7A—C7—H7B107.5
C3—C4—C5120.22 (16)N1—C8—S2114.69 (11)
C3—C4—H4119.9N1—C8—S1119.12 (11)
C5—C4—H4119.9S2—C8—S1125.76 (9)
C6—C1—C2—C30.4 (2)C5—C6—C7—S1131.52 (14)
C6—C1—C2—Cl1179.77 (12)C1—C6—C7—S1−50.67 (18)
C1—C2—C3—C4−0.5 (3)C8—S1—C7—C6−69.17 (13)
Cl1—C2—C3—C4−179.85 (13)N1i—N1—C8—S2−1.62 (19)
C2—C3—C4—C50.1 (3)N1i—N1—C8—S1171.24 (12)
C3—C4—C5—C60.4 (3)C8i—S2—C8—N10.62 (7)
C4—C5—C6—C1−0.5 (2)C8i—S2—C8—S1−171.70 (14)
C4—C5—C6—C7177.37 (15)C7—S1—C8—N1154.09 (12)
C2—C1—C6—C50.1 (2)C7—S1—C8—S2−33.91 (11)
C2—C1—C6—C7−177.73 (14)
D—H···AD—HH···AD···AD—H···A
C3—H3···N1ii0.932.593.514 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯N1i0.932.593.514 (2)172

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-(4-Pyrid-yl)-1,3,4-thia-diazole-2(3H)-thione.

Authors:  Xu-Feng Liu; Xing-Hai Liu
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