Literature DB >> 22719415

5-Carbamoyl-2-methyl-1-(2-methyl-benz-yl)pyridinium bromide.

Kyung Beom Kim, Seung Man Yu, Cheal Kim, Youngmee Kim.   

Abstract

In the title mol-ecular salt, C(15)H(17)N(2)O(+)·Br(-), the benzene and pyridinium rings form a dihedral angle of 83.0 (1)°. In the crystal, N-H⋯Br and N-H⋯O hydrogen bonds link the components into chains along [010]. These chains are linked by weak C-H⋯O and C-H⋯Br hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719415      PMCID: PMC3379217          DOI: 10.1107/S1600536812018958

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was prepared as an NAD+ (nicotinamide adenine dinucleotide) model. For the role of reduced nicotinamide co-factors (NADH and NADPH) in enzyme-catalysed reactions, see: Hollmann et al. (2001 ▶); Lee et al. (2011 ▶); Maenaka et al. (2012 ▶); Park et al. (2008 ▶); Ruppert et al. (1988 ▶); Zhu et al. (2003 ▶, 2006 ▶). For the generation of NADH, see: Qing et al. (2006 ▶). For an efficient method of in situ regeneration, see: Song et al. (2008 ▶). For a related structure, see: Kim et al. (2012 ▶).

Experimental

Crystal data

C15H17N2OBr M = 321.22 Monoclinic, a = 8.4880 (17) Å b = 10.502 (2) Å c = 33.450 (7) Å β = 96.85 (3)° V = 2960.5 (10) Å3 Z = 8 Mo Kα radiation μ = 2.77 mm−1 T = 293 K 0.50 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.338, T max = 0.769 8103 measured reflections 2879 independent reflections 1857 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.096 S = 1.00 2879 reflections 174 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Brandenburg, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812018958/lh5461sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018958/lh5461Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018958/lh5461Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17N2O+·BrF(000) = 1312
Mr = 321.22Dx = 1.441 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2248 reflections
a = 8.4880 (17) Åθ = 2.3–25.2°
b = 10.502 (2) ŵ = 2.77 mm1
c = 33.450 (7) ÅT = 293 K
β = 96.85 (3)°Block, colorless
V = 2960.5 (10) Å30.50 × 0.20 × 0.10 mm
Z = 8
Bruker SMART CCD diffractometer2879 independent reflections
Radiation source: fine-focus sealed tube1857 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
φ and ω scansθmax = 26.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −9→10
Tmin = 0.338, Tmax = 0.769k = −12→8
8103 measured reflectionsl = −41→40
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0247P)2 + 1.3939P] where P = (Fo2 + 2Fc2)/3
2879 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.01684 (4)0.38708 (4)0.349683 (12)0.06234 (17)
N10.2074 (3)0.3760 (3)0.26330 (9)0.0686 (9)
H1A0.15990.40330.28300.082*
H1B0.21110.29570.25850.082*
N20.4953 (3)0.4466 (3)0.15096 (8)0.0435 (6)
O10.2735 (4)0.5725 (3)0.24558 (9)0.0862 (9)
C10.2742 (4)0.4572 (4)0.24056 (11)0.0577 (9)
C20.3589 (4)0.4032 (3)0.20721 (10)0.0466 (8)
C30.3794 (4)0.2738 (4)0.20086 (11)0.0590 (9)
H30.34140.21440.21800.071*
C40.4560 (4)0.2342 (3)0.16924 (11)0.0570 (9)
H40.46960.14750.16520.068*
C50.5131 (4)0.3198 (3)0.14343 (10)0.0468 (8)
C60.5919 (4)0.2774 (3)0.10809 (10)0.0599 (10)
H6A0.53540.31120.08380.090*
H6B0.59160.18610.10680.090*
H6C0.69930.30780.11090.090*
C70.4195 (3)0.4868 (3)0.18186 (9)0.0452 (8)
H70.40830.57370.18600.054*
C80.5564 (4)0.5431 (3)0.12466 (10)0.0503 (9)
H8A0.66350.51990.12010.060*
H8B0.56170.62460.13840.060*
C90.4566 (4)0.5572 (3)0.08456 (10)0.0500 (9)
C100.3025 (4)0.5121 (3)0.07804 (11)0.0609 (10)
H100.25790.47120.09860.073*
C110.2144 (5)0.5281 (4)0.04038 (14)0.0816 (13)
H110.11130.49710.03560.098*
C120.2825 (7)0.5909 (4)0.01029 (14)0.0939 (17)
H120.22480.6027−0.01490.113*
C130.4333 (7)0.6351 (4)0.01754 (14)0.0880 (14)
H130.47730.6767−0.00300.106*
C140.5231 (5)0.6206 (3)0.05406 (12)0.0664 (11)
C150.6904 (6)0.6707 (5)0.06056 (15)0.1029 (16)
H15A0.71390.71440.03680.154*
H15B0.76290.60100.06610.154*
H15C0.70100.72860.08290.154*
U11U22U33U12U13U23
Br10.0576 (3)0.0523 (3)0.0775 (3)−0.0027 (2)0.00950 (18)0.0134 (2)
N10.075 (2)0.078 (2)0.0571 (19)−0.0028 (19)0.0258 (17)−0.0019 (17)
N20.0468 (15)0.0348 (15)0.0494 (16)0.0015 (13)0.0076 (13)−0.0034 (13)
O10.118 (2)0.0592 (18)0.091 (2)0.0093 (18)0.0527 (18)−0.0127 (16)
C10.057 (2)0.065 (3)0.052 (2)0.007 (2)0.0107 (18)−0.001 (2)
C20.0435 (18)0.051 (2)0.0451 (19)0.0017 (16)0.0045 (15)−0.0026 (17)
C30.071 (2)0.045 (2)0.061 (2)−0.0051 (19)0.011 (2)0.0024 (18)
C40.072 (2)0.035 (2)0.065 (2)0.0027 (18)0.0104 (19)−0.0033 (18)
C50.0427 (19)0.037 (2)0.059 (2)0.0023 (16)0.0002 (16)−0.0075 (17)
C60.057 (2)0.053 (2)0.071 (2)0.0049 (18)0.0164 (19)−0.0177 (19)
C70.0461 (19)0.044 (2)0.0453 (19)0.0041 (16)0.0042 (16)−0.0068 (16)
C80.057 (2)0.038 (2)0.058 (2)−0.0058 (17)0.0144 (18)−0.0061 (17)
C90.064 (2)0.0372 (19)0.050 (2)0.0100 (18)0.0107 (18)−0.0060 (17)
C100.065 (2)0.054 (2)0.062 (3)0.018 (2)0.001 (2)−0.0070 (19)
C110.078 (3)0.073 (3)0.090 (3)0.029 (2)−0.008 (3)−0.021 (3)
C120.142 (5)0.079 (4)0.055 (3)0.046 (3)−0.014 (3)0.002 (2)
C130.129 (4)0.071 (3)0.064 (3)0.014 (3)0.013 (3)0.004 (2)
C140.103 (3)0.042 (2)0.055 (2)0.007 (2)0.014 (2)−0.0017 (19)
C150.137 (4)0.088 (3)0.092 (3)−0.044 (3)0.048 (3)0.005 (3)
N1—C11.315 (5)C7—H70.9300
N1—H1A0.8600C8—C91.506 (5)
N1—H1B0.8600C8—H8A0.9700
N2—C71.348 (4)C8—H8B0.9700
N2—C51.367 (4)C9—C101.384 (5)
N2—C81.476 (4)C9—C141.393 (5)
O1—C11.224 (4)C10—C111.397 (5)
C1—C21.508 (5)C10—H100.9300
C2—C71.363 (4)C11—C121.385 (7)
C2—C31.390 (5)C11—H110.9300
C3—C41.371 (5)C12—C131.357 (7)
C3—H30.9300C12—H120.9300
C4—C51.374 (5)C13—C141.369 (6)
C4—H40.9300C13—H130.9300
C5—C61.494 (4)C14—C151.505 (6)
C6—H6A0.9600C15—H15A0.9600
C6—H6B0.9600C15—H15B0.9600
C6—H6C0.9600C15—H15C0.9600
C1—N1—H1A120.0N2—C8—C9113.5 (3)
C1—N1—H1B120.0N2—C8—H8A108.9
H1A—N1—H1B120.0C9—C8—H8A108.9
C7—N2—C5121.3 (3)N2—C8—H8B108.9
C7—N2—C8118.4 (3)C9—C8—H8B108.9
C5—N2—C8120.3 (3)H8A—C8—H8B107.7
O1—C1—N1123.6 (4)C10—C9—C14120.4 (3)
O1—C1—C2118.9 (4)C10—C9—C8121.8 (3)
N1—C1—C2117.5 (3)C14—C9—C8117.7 (3)
C7—C2—C3118.1 (3)C9—C10—C11119.7 (4)
C7—C2—C1117.9 (3)C9—C10—H10120.2
C3—C2—C1124.0 (3)C11—C10—H10120.2
C4—C3—C2119.6 (3)C12—C11—C10119.2 (4)
C4—C3—H3120.2C12—C11—H11120.4
C2—C3—H3120.2C10—C11—H11120.4
C3—C4—C5121.4 (3)C13—C12—C11120.0 (4)
C3—C4—H4119.3C13—C12—H12120.0
C5—C4—H4119.3C11—C12—H12120.0
N2—C5—C4117.8 (3)C12—C13—C14122.3 (5)
N2—C5—C6120.4 (3)C12—C13—H13118.8
C4—C5—C6121.8 (3)C14—C13—H13118.8
C5—C6—H6A109.5C13—C14—C9118.4 (4)
C5—C6—H6B109.5C13—C14—C15120.3 (4)
H6A—C6—H6B109.5C9—C14—C15121.3 (4)
C5—C6—H6C109.5C14—C15—H15A109.5
H6A—C6—H6C109.5C14—C15—H15B109.5
H6B—C6—H6C109.5H15A—C15—H15B109.5
N2—C7—C2121.7 (3)C14—C15—H15C109.5
N2—C7—H7119.1H15A—C15—H15C109.5
C2—C7—H7119.1H15B—C15—H15C109.5
O1—C1—C2—C7−5.5 (5)C1—C2—C7—N2−179.2 (3)
N1—C1—C2—C7175.8 (3)C7—N2—C8—C9−103.9 (3)
O1—C1—C2—C3174.2 (4)C5—N2—C8—C974.9 (4)
N1—C1—C2—C3−4.5 (5)N2—C8—C9—C1017.3 (4)
C7—C2—C3—C4−1.4 (5)N2—C8—C9—C14−164.3 (3)
C1—C2—C3—C4178.9 (3)C14—C9—C10—C111.2 (5)
C2—C3—C4—C5−0.1 (5)C8—C9—C10—C11179.6 (3)
C7—N2—C5—C4−2.2 (4)C9—C10—C11—C12−0.9 (6)
C8—N2—C5—C4179.0 (3)C10—C11—C12—C130.4 (7)
C7—N2—C5—C6177.6 (3)C11—C12—C13—C14−0.2 (7)
C8—N2—C5—C6−1.1 (4)C12—C13—C14—C90.5 (6)
C3—C4—C5—N21.9 (5)C12—C13—C14—C15179.6 (4)
C3—C4—C5—C6−177.9 (3)C10—C9—C14—C13−1.0 (5)
C5—N2—C7—C20.8 (5)C8—C9—C14—C13−179.5 (3)
C8—N2—C7—C2179.5 (3)C10—C9—C14—C15179.9 (4)
C3—C2—C7—N21.1 (5)C8—C9—C14—C151.4 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br10.862.673.477 (3)157
N1—H1B···O1i0.862.353.207 (4)173
C3—H3···O1i0.932.223.149 (5)174
C4—H4···Br1i0.932.783.712 (4)175
C6—H6C···Br1ii0.962.733.638 (3)157
C8—H8B···Br1iii0.972.873.782 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Br10.862.673.477 (3)157
N1—H1B⋯O1i0.862.353.207 (4)173
C3—H3⋯O1i0.932.223.149 (5)174
C4—H4⋯Br1i0.932.783.712 (4)175
C6—H6C⋯Br1ii0.962.733.638 (3)157
C8—H8B⋯Br1iii0.972.873.782 (3)156

Symmetry codes: (i) ; (ii) ; (iii) .

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