Literature DB >> 22719405

1-(Adamantan-1-ylcarbon-yl)-3-(2,6-difluoro-4-hy-droxy-phen-yl)thio-urea.

Shaaban K Mohamed, Abdel-Aal M Jaber, Sohail Saeed, Khuram Shahzad Ahmad, Wing-Tak Wong.   

Abstract

In the title mol-ecule, C(18)H(20)F(2)N(2)O(2)S, the 2,6-difluoro-4-hy-droxy-phenyl ring and the carbonyl-thio-urea group are each essentially planar, with maximum deviations of atoms from their mean planes of 0.0113 (14) and 0.1017 (15) Å, respectively; the dihedral angle between these two planes is 71.03 (6)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, N-H⋯O and O-H⋯S hydrogen bonds connect the mol-ecules into chains running diagonally across the bc plane. C-H⋯S and C-H⋯F contacts are also observed.

Entities:  

Year:  2012        PMID: 22719405      PMCID: PMC3379207          DOI: 10.1107/S1600536812018806

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background studies of thio­urea derivatives, see: Saeed et al. (2011 ▶). For a related structure, see: Saeed et al. (2010 ▶).

Experimental

Crystal data

C18H20F2N2O2S M = 366.42 Triclinic, a = 7.3985 (9) Å b = 10.4953 (13) Å c = 12.4094 (15) Å α = 65.554 (2)° β = 79.372 (2)° γ = 89.766 (2)° V = 859.34 (18) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.38 × 0.36 × 0.08 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.920, T max = 0.982 4824 measured reflections 2976 independent reflections 2399 reflections with I > 2σ(I) R int = 0.010

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.100 S = 1.04 2976 reflections 238 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018806/pv2537sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018806/pv2537Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018806/pv2537Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20F2N2O2SZ = 2
Mr = 366.42F(000) = 384
Triclinic, P1Dx = 1.416 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3985 (9) ÅCell parameters from 4824 reflections
b = 10.4953 (13) Åθ = 2.8–25.0°
c = 12.4094 (15) ŵ = 0.22 mm1
α = 65.554 (2)°T = 296 K
β = 79.372 (2)°Plate, colourless
γ = 89.766 (2)°0.38 × 0.36 × 0.08 mm
V = 859.34 (18) Å3
Bruker SMART 1000 CCD diffractometer2976 independent reflections
Radiation source: fine-focus sealed tube2399 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.010
ω & φ scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −8→8
Tmin = 0.920, Tmax = 0.982k = −9→12
4824 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0409P)2 + 0.3498P] where P = (Fo2 + 2Fc2)/3
2976 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.98449 (8)−0.02031 (6)0.68281 (5)0.05290 (18)
F11.3675 (2)0.16253 (18)0.66290 (12)0.0801 (5)
F20.81301 (19)0.25665 (16)0.85556 (13)0.0769 (4)
O11.2972 (3)0.08462 (19)1.06720 (15)0.0659 (5)
H1O1.212 (4)0.076 (3)1.128 (3)0.095 (11)*
O20.8566 (3)0.42734 (17)0.47025 (18)0.0918 (7)
N11.0107 (3)0.2470 (2)0.64901 (16)0.0533 (5)
H10.993 (3)0.327 (3)0.613 (2)0.061 (7)*
N20.8692 (3)0.19619 (19)0.51851 (15)0.0481 (4)
H20.838 (3)0.132 (2)0.5017 (18)0.046 (6)*
C11.0863 (3)0.2106 (2)0.75458 (17)0.0465 (5)
C21.2611 (3)0.1657 (2)0.76211 (18)0.0508 (5)
C31.3321 (3)0.1234 (2)0.86477 (18)0.0521 (5)
H31.45010.09260.86620.063*
C41.2233 (3)0.1278 (2)0.96622 (17)0.0467 (5)
C51.0489 (3)0.1751 (2)0.96344 (18)0.0491 (5)
H50.97680.18031.03110.059*
C60.9851 (3)0.2141 (2)0.85798 (19)0.0484 (5)
C70.9559 (3)0.1514 (2)0.61553 (16)0.0433 (5)
C80.8121 (3)0.3264 (2)0.45461 (19)0.0517 (5)
C90.6926 (3)0.3338 (2)0.36480 (16)0.0417 (4)
C100.5468 (3)0.4380 (2)0.3671 (2)0.0615 (6)
H10A0.46910.40410.44710.074*
H10B0.60720.52850.34880.074*
C110.4287 (4)0.4539 (3)0.2740 (3)0.0733 (8)
H110.33570.52000.27610.088*
C120.3332 (3)0.3132 (3)0.3014 (3)0.0759 (8)
H12A0.25370.27680.38100.091*
H12B0.25730.32460.24260.091*
C130.4766 (3)0.2112 (2)0.2971 (2)0.0541 (5)
H130.41430.12040.31510.065*
C140.5933 (3)0.1922 (2)0.39204 (18)0.0457 (5)
H14A0.68340.12510.39120.055*
H14B0.51450.15590.47180.055*
C150.8154 (3)0.3888 (3)0.23861 (19)0.0575 (6)
H15A0.90720.32320.23630.069*
H15B0.87930.47830.21970.069*
C160.6960 (4)0.4067 (3)0.1452 (2)0.0684 (7)
H160.77440.44320.06430.082*
C170.6014 (3)0.2650 (3)0.1738 (2)0.0631 (6)
H17A0.52970.27440.11330.076*
H17B0.69320.19900.17280.076*
C180.5517 (4)0.5102 (3)0.1499 (2)0.0811 (9)
H18A0.61290.60030.13200.097*
H18B0.47780.52380.08960.097*
U11U22U33U12U13U23
S10.0726 (4)0.0439 (3)0.0474 (3)0.0169 (3)−0.0265 (3)−0.0185 (2)
F10.0762 (10)0.1176 (13)0.0479 (8)0.0208 (9)−0.0104 (7)−0.0372 (8)
F20.0675 (9)0.0973 (11)0.0828 (10)0.0420 (8)−0.0378 (8)−0.0454 (9)
O10.0662 (11)0.0889 (13)0.0456 (9)0.0123 (9)−0.0283 (8)−0.0240 (9)
O20.1500 (18)0.0459 (10)0.1119 (15)0.0241 (10)−0.0993 (14)−0.0348 (10)
N10.0806 (14)0.0408 (10)0.0478 (10)0.0158 (10)−0.0380 (10)−0.0175 (9)
N20.0674 (12)0.0421 (10)0.0468 (10)0.0137 (9)−0.0317 (9)−0.0221 (8)
C10.0626 (13)0.0406 (11)0.0417 (11)0.0084 (10)−0.0255 (10)−0.0165 (9)
C20.0556 (13)0.0596 (13)0.0379 (11)0.0067 (10)−0.0114 (9)−0.0203 (10)
C30.0463 (12)0.0630 (14)0.0465 (12)0.0087 (10)−0.0163 (9)−0.0194 (10)
C40.0523 (12)0.0483 (12)0.0398 (11)0.0010 (9)−0.0199 (9)−0.0142 (9)
C50.0561 (13)0.0529 (12)0.0414 (11)0.0070 (10)−0.0134 (9)−0.0214 (10)
C60.0515 (12)0.0458 (11)0.0549 (12)0.0139 (9)−0.0240 (10)−0.0226 (10)
C70.0497 (11)0.0473 (11)0.0370 (10)0.0114 (9)−0.0172 (9)−0.0183 (9)
C80.0689 (14)0.0439 (12)0.0497 (12)0.0104 (10)−0.0311 (11)−0.0192 (10)
C90.0494 (11)0.0394 (10)0.0394 (10)0.0077 (9)−0.0197 (9)−0.0152 (9)
C100.0797 (16)0.0561 (14)0.0650 (14)0.0285 (12)−0.0339 (12)−0.0335 (12)
C110.0812 (18)0.0689 (17)0.0902 (19)0.0416 (14)−0.0524 (16)−0.0393 (15)
C120.0513 (14)0.090 (2)0.096 (2)0.0159 (13)−0.0330 (14)−0.0404 (16)
C130.0497 (12)0.0524 (13)0.0647 (14)0.0012 (10)−0.0258 (11)−0.0232 (11)
C140.0472 (11)0.0448 (11)0.0428 (11)0.0029 (9)−0.0128 (9)−0.0145 (9)
C150.0553 (13)0.0594 (14)0.0500 (12)−0.0110 (11)−0.0106 (10)−0.0152 (11)
C160.0849 (18)0.0748 (17)0.0357 (11)−0.0125 (14)−0.0149 (11)−0.0124 (11)
C170.0784 (16)0.0709 (16)0.0530 (13)0.0091 (13)−0.0310 (12)−0.0314 (12)
C180.124 (2)0.0520 (14)0.0721 (17)0.0101 (15)−0.0662 (17)−0.0112 (13)
S1—C71.675 (2)C10—C111.529 (3)
F1—C21.346 (2)C10—H10A0.9700
F2—C61.349 (2)C10—H10B0.9700
O1—C41.362 (2)C11—C181.512 (4)
O1—H1O0.87 (3)C11—C121.517 (4)
O2—C81.211 (2)C11—H110.9800
N1—C71.325 (3)C12—C131.514 (3)
N1—C11.425 (2)C12—H12A0.9700
N1—H10.79 (2)C12—H12B0.9700
N2—C71.377 (2)C13—C171.510 (3)
N2—C81.377 (3)C13—C141.534 (3)
N2—H20.83 (2)C13—H130.9800
C1—C61.376 (3)C14—H14A0.9700
C1—C21.380 (3)C14—H14B0.9700
C2—C31.369 (3)C15—C161.535 (3)
C3—C41.382 (3)C15—H15A0.9700
C3—H30.9300C15—H15B0.9700
C4—C51.382 (3)C16—C171.519 (3)
C5—C61.373 (3)C16—C181.531 (4)
C5—H50.9300C16—H160.9800
C8—C91.523 (2)C17—H17A0.9700
C9—C151.531 (3)C17—H17B0.9700
C9—C101.538 (3)C18—H18A0.9700
C9—C141.538 (3)C18—H18B0.9700
C4—O1—H1O109 (2)C18—C11—H11109.4
C7—N1—C1122.30 (17)C12—C11—H11109.4
C7—N1—H1119.5 (17)C10—C11—H11109.4
C1—N1—H1118.0 (17)C13—C12—C11109.5 (2)
C7—N2—C8129.89 (18)C13—C12—H12A109.8
C7—N2—H2113.5 (14)C11—C12—H12A109.8
C8—N2—H2116.3 (14)C13—C12—H12B109.8
C6—C1—C2115.57 (17)C11—C12—H12B109.8
C6—C1—N1121.27 (19)H12A—C12—H12B108.2
C2—C1—N1123.14 (19)C17—C13—C12110.9 (2)
F1—C2—C3118.07 (19)C17—C13—C14109.09 (17)
F1—C2—C1118.10 (17)C12—C13—C14109.23 (19)
C3—C2—C1123.83 (19)C17—C13—H13109.2
C2—C3—C4118.00 (19)C12—C13—H13109.2
C2—C3—H3121.0C14—C13—H13109.2
C4—C3—H3121.0C13—C14—C9109.91 (16)
O1—C4—C5122.39 (19)C13—C14—H14A109.7
O1—C4—C3116.74 (19)C9—C14—H14A109.7
C5—C4—C3120.87 (17)C13—C14—H14B109.7
C6—C5—C4118.13 (19)C9—C14—H14B109.7
C6—C5—H5120.9H14A—C14—H14B108.2
C4—C5—H5120.9C9—C15—C16109.42 (18)
F2—C6—C5118.48 (19)C9—C15—H15A109.8
F2—C6—C1117.93 (17)C16—C15—H15A109.8
C5—C6—C1123.58 (19)C9—C15—H15B109.8
N1—C7—N2117.75 (17)C16—C15—H15B109.8
N1—C7—S1124.67 (14)H15A—C15—H15B108.2
N2—C7—S1117.59 (15)C17—C16—C18110.1 (2)
O2—C8—N2120.81 (18)C17—C16—C15109.17 (19)
O2—C8—C9123.18 (18)C18—C16—C15109.3 (2)
N2—C8—C9116.01 (17)C17—C16—H16109.4
C8—C9—C15108.41 (17)C18—C16—H16109.4
C8—C9—C10107.81 (16)C15—C16—H16109.4
C15—C9—C10109.33 (17)C13—C17—C16109.20 (19)
C8—C9—C14114.03 (15)C13—C17—H17A109.8
C15—C9—C14108.57 (16)C16—C17—H17A109.8
C10—C9—C14108.62 (17)C13—C17—H17B109.8
C11—C10—C9109.65 (17)C16—C17—H17B109.8
C11—C10—H10A109.7H17A—C17—H17B108.3
C9—C10—H10A109.7C11—C18—C16109.77 (19)
C11—C10—H10B109.7C11—C18—H18A109.7
C9—C10—H10B109.7C16—C18—H18A109.7
H10A—C10—H10B108.2C11—C18—H18B109.7
C18—C11—C12109.5 (2)C16—C18—H18B109.7
C18—C11—C10108.9 (2)H18A—C18—H18B108.2
C12—C11—C10110.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.79 (2)2.09 (2)2.692 (2)133 (2)
N1—H1···O2i0.79 (2)2.52 (2)3.185 (3)142 (2)
O1—H1O···S1ii0.87 (3)2.36 (3)3.212 (2)169 (3)
C14—H14A···S1iii0.972.843.761 (2)159
C14—H14B···F1iv0.972.453.354 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.79 (2)2.09 (2)2.692 (2)133 (2)
N1—H1⋯O2i0.79 (2)2.52 (2)3.185 (3)142 (2)
O1—H1O⋯S1ii0.87 (3)2.36 (3)3.212 (2)169 (3)
C14—H14A⋯S1iii0.972.843.761 (2)159
C14—H14B⋯F1iv0.972.453.354 (3)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Novel Guanidine Compound against Multidrug-Resistant Cystic Fibrosis-Associated Bacterial Species.

Authors:  Aamer Saeed; Alejandra Bosch; Marisa Bettiol; Diana L Nossa González; Mauricio Federico Erben; Yanina Lamberti
Journal:  Molecules       Date:  2018-05-11       Impact factor: 4.411

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.