Literature DB >> 22719369

Diaqua-bis-(2,2'-bi-1H-imidazole)-man-ganese(II) benzene-1,4-di-carboxyl-ate.

Lining Yang, Yanxiang Zhi, Jiahui Hei, Yanqing Miao.   

Abstract

The asymmetric unit of the title compound, [Mn(C(6)H(6)N(4))(2)(H(2)O)(2)](C(8)H(4)O(4)), contains one-half each of the centrosymmetric cation and anion. The Mn(II) atom is coordinated by four N atoms [Mn-N = 2.2168 (14) and 2.2407 (14) Å] from two 2,2'-biimidazole ligands and two water mol-ecules [Mn-O = 2.2521 (14) Å] in a distorted octa-hedral geometry. Inter-molecular N-H⋯O and O-H⋯O hydrogen bonds consol-idate the crystal packing, which also exhibits π-π inter-actions between five-membered rings, with a centroid-centroid distance of 3.409 (2) Å.

Entities:  

Year:  2012        PMID: 22719369      PMCID: PMC3379148          DOI: 10.1107/S160053681202199X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Fortin & Beauchamp (2001 ▶); Sang et al. (2002 ▶); Atencio et al. (2004 ▶); Wang et al. (2007 ▶). For background to supra­molecular assemblies, see: Ramirez et al. (2002 ▶); Baca et al. (2003 ▶).

Experimental

Crystal data

[Mn(C6H6N4)2(H2O)2](C8H4O4) M = 523.38 Monoclinic, a = 8.2666 (10) Å b = 10.9027 (13) Å c = 12.6734 (16) Å β = 93.986 (2)° V = 1139.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.63 mm−1 T = 293 K 0.46 × 0.19 × 0.07 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.761, T max = 0.960 5689 measured reflections 2024 independent reflections 1712 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.075 S = 1.04 2024 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202199X/cv5293sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202199X/cv5293Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C6H6N4)2(H2O)2](C8H4O4)F(000) = 538
Mr = 523.38Dx = 1.525 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.2666 (10) ÅCell parameters from 2178 reflections
b = 10.9027 (13) Åθ = 3.0–26.9°
c = 12.6734 (16) ŵ = 0.63 mm1
β = 93.986 (2)°T = 293 K
V = 1139.5 (2) Å3Block, yellow
Z = 20.46 × 0.19 × 0.07 mm
Bruker SMART CCD area-detector diffractometer2024 independent reflections
Radiation source: fine-focus sealed tube1712 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 25.1°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −6→9
Tmin = 0.761, Tmax = 0.960k = −13→12
5689 measured reflectionsl = −14→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0403P)2 + 0.2933P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2024 reflectionsΔρmax = 0.20 e Å3
167 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0048 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.00000.50000.50000.02879 (15)
N10.24692 (16)0.58566 (12)0.51483 (10)0.0273 (3)
N20.48208 (17)0.58683 (13)0.60838 (11)0.0289 (3)
H2A0.55800.56730.65520.035*
N30.12437 (17)0.39115 (14)0.62924 (11)0.0316 (4)
N40.34624 (18)0.37195 (14)0.73441 (11)0.0354 (4)
H40.44220.38510.76280.042*
O10.62726 (17)0.39434 (14)0.85633 (11)0.0517 (4)
O20.72528 (16)0.54524 (15)0.76328 (11)0.0501 (4)
O30.08176 (19)0.36279 (14)0.38200 (11)0.0431 (4)
C10.3431 (2)0.67589 (16)0.47712 (14)0.0322 (4)
H10.31360.72800.42100.039*
C20.4879 (2)0.67729 (16)0.53438 (14)0.0335 (4)
H20.57440.72980.52500.040*
C30.3359 (2)0.53425 (15)0.59437 (13)0.0248 (4)
C40.2721 (2)0.43418 (15)0.65354 (12)0.0272 (4)
C50.2410 (2)0.28425 (19)0.76286 (16)0.0432 (5)
H50.25920.22680.81660.052*
C60.1051 (2)0.29636 (18)0.69827 (15)0.0403 (5)
H60.01280.24790.70030.048*
C70.7311 (2)0.47488 (17)0.84132 (14)0.0342 (4)
C80.8711 (2)0.48881 (15)0.92349 (14)0.0297 (4)
C90.8507 (2)0.45947 (17)1.02814 (14)0.0337 (4)
H90.75040.43231.04760.040*
C100.9791 (2)0.47042 (17)1.10393 (14)0.0345 (4)
H100.96430.45021.17390.041*
H3A0.135 (3)0.390 (3)0.330 (2)0.080*
H3B0.104 (3)0.292 (3)0.391 (2)0.080*
U11U22U33U12U13U23
Mn10.0234 (2)0.0332 (2)0.0286 (2)−0.00110 (16)−0.00624 (14)0.00314 (16)
N10.0261 (8)0.0281 (8)0.0272 (7)0.0002 (6)−0.0017 (6)0.0020 (6)
N20.0229 (8)0.0310 (8)0.0321 (8)−0.0009 (6)−0.0041 (6)−0.0006 (6)
N30.0259 (8)0.0362 (9)0.0316 (8)−0.0039 (7)−0.0047 (6)0.0066 (6)
N40.0290 (8)0.0414 (9)0.0342 (8)−0.0042 (7)−0.0085 (6)0.0097 (7)
O10.0465 (9)0.0514 (9)0.0536 (9)−0.0173 (7)−0.0224 (7)0.0128 (7)
O20.0357 (8)0.0730 (10)0.0397 (8)−0.0108 (7)−0.0124 (6)0.0198 (7)
O30.0497 (9)0.0394 (8)0.0410 (8)−0.0008 (7)0.0093 (6)−0.0038 (7)
C10.0342 (10)0.0297 (10)0.0327 (9)0.0005 (8)0.0015 (8)0.0055 (8)
C20.0306 (10)0.0300 (10)0.0404 (10)−0.0061 (8)0.0045 (8)0.0008 (8)
C30.0229 (9)0.0249 (9)0.0261 (8)0.0011 (7)−0.0007 (7)−0.0022 (7)
C40.0260 (9)0.0291 (9)0.0261 (9)0.0005 (7)−0.0026 (7)0.0014 (7)
C50.0409 (11)0.0451 (12)0.0426 (11)−0.0073 (9)−0.0056 (9)0.0216 (9)
C60.0327 (10)0.0434 (12)0.0439 (11)−0.0111 (9)−0.0035 (8)0.0144 (9)
C70.0289 (10)0.0397 (11)0.0331 (10)−0.0006 (8)−0.0055 (8)−0.0006 (8)
C80.0299 (10)0.0273 (9)0.0308 (9)0.0027 (7)−0.0066 (7)−0.0007 (7)
C90.0268 (10)0.0384 (10)0.0354 (10)−0.0015 (8)−0.0021 (7)0.0008 (8)
C100.0354 (11)0.0398 (11)0.0274 (9)−0.0008 (8)−0.0026 (8)0.0010 (8)
Mn1—N32.2168 (14)O2—C71.250 (2)
Mn1—N3i2.2168 (14)O3—H3A0.87 (3)
Mn1—N12.2407 (14)O3—H3B0.80 (3)
Mn1—N1i2.2407 (14)C1—C21.356 (2)
Mn1—O32.2521 (14)C1—H10.9300
Mn1—O3i2.2521 (14)C2—H20.9300
N1—C31.330 (2)C3—C41.444 (2)
N1—C11.372 (2)C5—C61.350 (3)
N2—C31.338 (2)C5—H50.9300
N2—C21.364 (2)C6—H60.9300
N2—H2A0.8600C7—C81.510 (2)
N3—C41.324 (2)C8—C10ii1.383 (3)
N3—C61.370 (2)C8—C91.386 (3)
N4—C41.341 (2)C9—C101.386 (2)
N4—C51.358 (2)C9—H90.9300
N4—H40.8600C10—C8ii1.383 (3)
O1—C71.252 (2)C10—H100.9300
N3—Mn1—N3i180.0C2—C1—N1109.46 (15)
N3—Mn1—N177.77 (5)C2—C1—H1125.3
N3i—Mn1—N1102.23 (5)N1—C1—H1125.3
N3—Mn1—N1i102.23 (5)C1—C2—N2106.73 (15)
N3i—Mn1—N1i77.77 (5)C1—C2—H2126.6
N1—Mn1—N1i180.00 (6)N2—C2—H2126.6
N3—Mn1—O389.42 (6)N1—C3—N2111.53 (15)
N3i—Mn1—O390.58 (6)N1—C3—C4120.62 (15)
N1—Mn1—O391.08 (5)N2—C3—C4127.86 (15)
N1i—Mn1—O388.92 (5)N3—C4—N4111.31 (15)
N3—Mn1—O3i90.58 (6)N3—C4—C3120.73 (15)
N3i—Mn1—O3i89.42 (6)N4—C4—C3127.95 (15)
N1—Mn1—O3i88.92 (5)C6—C5—N4106.95 (16)
N1i—Mn1—O3i91.08 (5)C6—C5—H5126.5
O3—Mn1—O3i180.00 (5)N4—C5—H5126.5
C3—N1—C1105.24 (14)C5—C6—N3109.40 (16)
C3—N1—Mn1109.91 (11)C5—C6—H6125.3
C1—N1—Mn1144.74 (11)N3—C6—H6125.3
C3—N2—C2107.05 (14)O2—C7—O1124.18 (17)
C3—N2—H2A126.5O2—C7—C8118.01 (17)
C2—N2—H2A126.5O1—C7—C8117.81 (16)
C4—N3—C6105.36 (14)C10ii—C8—C9119.03 (16)
C4—N3—Mn1110.79 (11)C10ii—C8—C7121.06 (16)
C6—N3—Mn1143.79 (12)C9—C8—C7119.91 (16)
C4—N4—C5106.97 (15)C8—C9—C10120.33 (17)
C4—N4—H4126.5C8—C9—H9119.8
C5—N4—H4126.5C10—C9—H9119.8
Mn1—O3—H3A117.7 (18)C8ii—C10—C9120.64 (17)
Mn1—O3—H3B129 (2)C8ii—C10—H10119.7
H3A—O3—H3B108 (3)C9—C10—H10119.7
N3—Mn1—N1—C3−3.35 (11)C1—N1—C3—C4179.99 (15)
N3i—Mn1—N1—C3176.65 (11)Mn1—N1—C3—C42.77 (19)
N1i—Mn1—N1—C3118.74 (12)C2—N2—C3—N10.25 (19)
O3—Mn1—N1—C3−92.52 (11)C2—N2—C3—C4−179.90 (17)
O3i—Mn1—N1—C387.48 (11)C6—N3—C4—N4−0.3 (2)
N3—Mn1—N1—C1−178.7 (2)Mn1—N3—C4—N4177.63 (11)
N3i—Mn1—N1—C11.3 (2)C6—N3—C4—C3178.54 (16)
N1i—Mn1—N1—C1−56.59 (18)Mn1—N3—C4—C3−3.5 (2)
O3—Mn1—N1—C192.1 (2)C5—N4—C4—N30.4 (2)
O3i—Mn1—N1—C1−87.9 (2)C5—N4—C4—C3−178.38 (18)
N3i—Mn1—N3—C4−180 (81)N1—C3—C4—N30.5 (3)
N1—Mn1—N3—C43.61 (11)N2—C3—C4—N3−179.33 (16)
N1i—Mn1—N3—C4−176.39 (11)N1—C3—C4—N4179.15 (16)
O3—Mn1—N3—C494.84 (12)N2—C3—C4—N4−0.7 (3)
O3i—Mn1—N3—C4−85.16 (12)C4—N4—C5—C6−0.3 (2)
N3i—Mn1—N3—C6−3 (81)N4—C5—C6—N30.1 (2)
N1—Mn1—N3—C6−179.8 (2)C4—N3—C6—C50.1 (2)
N1i—Mn1—N3—C60.2 (2)Mn1—N3—C6—C5−176.60 (16)
O3—Mn1—N3—C6−88.5 (2)O2—C7—C8—C10ii−30.4 (3)
O3i—Mn1—N3—C691.5 (2)O1—C7—C8—C10ii150.38 (18)
C3—N1—C1—C20.00 (19)O2—C7—C8—C9150.21 (18)
Mn1—N1—C1—C2175.45 (14)O1—C7—C8—C9−29.0 (3)
N1—C1—C2—N20.1 (2)C10ii—C8—C9—C10−0.3 (3)
C3—N2—C2—C1−0.24 (19)C7—C8—C9—C10179.15 (17)
C1—N1—C3—N2−0.15 (18)C8—C9—C10—C8ii0.3 (3)
Mn1—N1—C3—N2−177.37 (11)
D—H···AD—HH···AD···AD—H···A
O3—H3B···O1iii0.80 (3)2.09 (3)2.850 (2)159 (3)
O3—H3A···O2iv0.87 (3)1.85 (3)2.711 (2)170 (3)
N4—H4···O10.861.872.7101 (19)165
N2—H2A···O20.861.892.7482 (19)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3B⋯O1i0.80 (3)2.09 (3)2.850 (2)159 (3)
O3—H3A⋯O2ii0.87 (3)1.85 (3)2.711 (2)170 (3)
N4—H4⋯O10.861.872.7101 (19)165
N2—H2A⋯O20.861.892.7482 (19)173

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Preparations, characterizations, and structures of (biimidazole)dihalobis(triphenylphosphine)rhenium(III) salts: strong ion-pairing and acid-base properties.

Authors:  S Fortin; A L Beauchamp
Journal:  Inorg Chem       Date:  2001-01-01       Impact factor: 5.165

3.  Robust hydrogen-bonded self-assemblies from biimidazole complexes. Synthesis and structural characterization of [M(biimidazole)2(OH2)2]2+ (M = Co2+, Ni2+) complexes and carboxylate modules.

Authors:  Reinaldo Atencio; Mirbel Chacón; Teresa González; Alexander Briceño; Giuseppe Agrifoglio; Anibal Sierraalta
Journal:  Dalton Trans       Date:  2004-01-16       Impact factor: 4.390

  3 in total

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