Literature DB >> 22719345

Tetra-μ(3)-iodido-tetra-kis-{[ethyl 2-(1H-benzimidazol-1-yl)acetate-κN(3)]copper(I)}.

Lili Yang1, Zhengyi Zhang.   

Abstract

The complex mol-ecule of the tetra-nuclear cubane-type title compound, [Cu(4)I(4)(C(11)H(12)N(2)O(2))(4)], has crystallographically imposed fourfold inversion symmetry. The Cu(I) ions are coordinated in a distorted tetra-hedral geometry by an N atom of a benzimidazole ring system and three μ(3)-iodide ions, forming a Cu(4)I(4) core. In the crystal, complex mol-ecules are connected into a three-dimensional network by C-H⋯O hydrogen bonds involving H and O atoms of adjacent eth-oxy-carbonyl groups.

Entities:  

Year:  2012        PMID: 22719345      PMCID: PMC3379124          DOI: 10.1107/S160053681202257X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications in physiological and pharmacological fields of benzimidazoyl derivatives or complexes based on the benzimidazoyl unit, see: Ramla et al. (2007 ▶); Barreca et al. (2007 ▶); Cetinkaya et al. (1999 ▶); Snyderwine et al. (1997 ▶); Skog & Solyakov (2002 ▶); Garner et al. (1999 ▶). For applications of copper complexes in biology or medicine, see: Sorrell 1989 ▶. For related structures, see: Sun et al. (2011 ▶); Liu et al. (2011 ▶); Toth et al. (1987 ▶).

Experimental

Crystal data

[Cu4I4(C11H12N2O2)4] M = 1578.66 Tetragonal, a = 21.196 (11) Å c = 11.581 (7) Å V = 5203 (5) Å3 Z = 4 Mo Kα radiation μ = 4.04 mm−1 T = 296 K 0.24 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.768, T max = 0.784 13042 measured reflections 2422 independent reflections 2018 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.053 S = 1.03 2422 reflections 155 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202257X/rz2757sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202257X/rz2757Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu4I4(C11H12N2O2)4]Dx = 2.015 Mg m3
Mr = 1578.66Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 4922 reflections
Hall symbol: -I 4adθ = 2.7–27.9°
a = 21.196 (11) ŵ = 4.04 mm1
c = 11.581 (7) ÅT = 296 K
V = 5203 (5) Å3Block, red
Z = 40.24 × 0.22 × 0.18 mm
F(000) = 3040
Bruker APEXII CCD diffractometer2422 independent reflections
Radiation source: fine-focus sealed tube2018 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
φ and ω scansθmax = 25.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −14→25
Tmin = 0.768, Tmax = 0.784k = −25→24
13042 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.053H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0216P)2 + 3.0196P] where P = (Fo2 + 2Fc2)/3
2422 reflections(Δ/σ)max = 0.004
155 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I11.102882 (10)0.771393 (11)0.517267 (18)0.04331 (9)
O20.78785 (12)1.08340 (12)0.5233 (2)0.0575 (7)
C90.81754 (17)1.02891 (18)0.5439 (3)0.0471 (9)
C110.7103 (2)1.1347 (3)0.4120 (7)0.143 (3)
H11A0.71031.17190.45930.214*
H11B0.66991.13020.37530.214*
H11C0.74251.13830.35410.214*
C80.88524 (16)1.04277 (16)0.5783 (3)0.0506 (9)
H8A0.90521.06790.51860.061*
H8B0.88551.06710.64930.061*
C100.72251 (18)1.0806 (2)0.4824 (4)0.0664 (11)
H10A0.71601.04240.43790.080*
H10B0.69391.08000.54770.080*
O10.79545 (12)0.97762 (12)0.5333 (2)0.0598 (7)
N20.92099 (13)0.98507 (12)0.5952 (2)0.0443 (7)
N10.96375 (13)0.89215 (13)0.5503 (2)0.0435 (7)
C70.93802 (16)0.94424 (16)0.5110 (3)0.0440 (8)
H70.93210.95230.43280.053*
C50.93545 (16)0.95618 (15)0.7004 (3)0.0428 (8)
C60.96267 (15)0.89832 (15)0.6711 (3)0.0405 (8)
C40.92889 (18)0.97605 (18)0.8156 (3)0.0556 (10)
H40.91111.01480.83470.067*
C30.95049 (19)0.9346 (2)0.8988 (3)0.0626 (11)
H30.94720.94570.97620.075*
C10.98362 (18)0.85733 (18)0.7569 (3)0.0538 (10)
H11.00140.81850.73850.065*
C20.97706 (18)0.87645 (19)0.8701 (3)0.0603 (10)
H20.99070.84990.92890.072*
Cu10.98756 (2)0.81434 (2)0.45656 (4)0.04928 (13)
U11U22U33U12U13U23
I10.03946 (14)0.04686 (15)0.04360 (13)−0.00175 (11)−0.00630 (9)−0.00031 (10)
O20.0476 (15)0.0452 (15)0.0798 (18)0.0054 (13)−0.0103 (13)0.0033 (13)
C90.047 (2)0.047 (2)0.0474 (19)0.003 (2)0.0016 (17)−0.0051 (17)
C110.068 (3)0.104 (4)0.256 (9)0.012 (4)−0.033 (4)0.080 (5)
C80.047 (2)0.0350 (19)0.070 (2)0.0048 (18)−0.0008 (18)−0.0054 (17)
C100.050 (2)0.074 (3)0.076 (3)0.004 (2)−0.011 (2)0.006 (2)
O10.0576 (17)0.0428 (15)0.0789 (18)−0.0059 (14)−0.0057 (14)−0.0100 (13)
N20.0445 (17)0.0343 (15)0.0542 (17)0.0042 (14)−0.0006 (14)−0.0027 (13)
N10.0467 (17)0.0391 (16)0.0446 (15)0.0054 (14)−0.0011 (13)−0.0027 (13)
C70.042 (2)0.043 (2)0.0469 (19)0.0004 (17)−0.0031 (16)−0.0032 (16)
C50.0369 (18)0.042 (2)0.049 (2)−0.0038 (16)0.0005 (16)−0.0007 (16)
C60.0400 (19)0.0360 (18)0.0456 (18)0.0006 (16)0.0008 (15)−0.0037 (15)
C40.057 (2)0.053 (2)0.058 (2)0.002 (2)0.0094 (19)−0.0157 (19)
C30.071 (3)0.074 (3)0.043 (2)−0.002 (2)0.0065 (19)−0.007 (2)
C10.062 (3)0.044 (2)0.055 (2)0.003 (2)−0.0007 (18)0.0030 (17)
C20.068 (3)0.062 (3)0.051 (2)−0.001 (2)0.001 (2)0.009 (2)
Cu10.0551 (3)0.0414 (2)0.0513 (3)0.0049 (2)0.0002 (2)−0.0078 (2)
I1—Cu12.7015 (14)N1—C61.406 (4)
I1—Cu1i2.7244 (16)N1—Cu12.038 (3)
I1—Cu1ii2.7334 (14)C7—H70.9300
O2—C91.337 (4)C5—C61.397 (4)
O2—C101.465 (4)C5—C41.406 (5)
C9—O11.190 (4)C6—C11.392 (5)
C9—C81.518 (5)C4—C31.383 (5)
C11—C101.432 (6)C4—H40.9300
C11—H11A0.9600C3—C21.395 (5)
C11—H11B0.9600C3—H30.9300
C11—H11C0.9600C1—C21.379 (5)
C10—H10A0.9700C1—H10.9300
C10—H10B0.9700C2—H20.9300
C8—N21.452 (4)Cu1—I1iii2.7244 (16)
C8—H8A0.9700Cu1—Cu1iii2.7252 (13)
C8—H8B0.9700Cu1—Cu1i2.7252 (13)
N2—C71.353 (4)Cu1—I1ii2.7334 (14)
N2—C51.397 (4)Cu1—Cu1ii2.7780 (17)
N1—C71.313 (4)
Cu1—I1—Cu1i60.299 (15)C1—C6—C5120.5 (3)
Cu1—I1—Cu1ii61.477 (17)C1—C6—N1130.3 (3)
Cu1i—I1—Cu1ii59.912 (15)C5—C6—N1109.3 (3)
C9—O2—C10117.9 (3)C3—C4—C5116.0 (3)
O1—C9—O2125.9 (3)C3—C4—H4122.0
O1—C9—C8125.1 (3)C5—C4—H4122.0
O2—C9—C8108.9 (3)C4—C3—C2122.0 (4)
C10—C11—H11A109.5C4—C3—H3119.0
C10—C11—H11B109.5C2—C3—H3119.0
H11A—C11—H11B109.5C2—C1—C6117.5 (3)
C10—C11—H11C109.5C2—C1—H1121.2
H11A—C11—H11C109.5C6—C1—H1121.2
H11B—C11—H11C109.5C1—C2—C3121.8 (4)
N2—C8—C9111.5 (3)C1—C2—H2119.1
N2—C8—H8A109.3C3—C2—H2119.1
C9—C8—H8A109.3N1—Cu1—I1110.98 (8)
N2—C8—H8B109.3N1—Cu1—I1iii104.30 (9)
C9—C8—H8B109.3I1—Cu1—I1iii114.311 (17)
H8A—C8—H8B108.0N1—Cu1—Cu1iii138.82 (8)
C11—C10—O2108.8 (4)I1—Cu1—Cu1iii110.146 (17)
C11—C10—H10A109.9I1iii—Cu1—Cu1iii59.43 (4)
O2—C10—H10A109.9N1—Cu1—Cu1i147.54 (8)
C11—C10—H10B109.9I1—Cu1—Cu1i60.27 (4)
O2—C10—H10B109.9I1iii—Cu1—Cu1i60.21 (4)
H10A—C10—H10B108.3Cu1iii—Cu1—Cu1i61.29 (3)
C7—N2—C5106.8 (3)N1—Cu1—I1ii103.14 (8)
C7—N2—C8125.5 (3)I1—Cu1—I1ii110.098 (19)
C5—N2—C8126.9 (3)I1iii—Cu1—I1ii113.280 (17)
C7—N1—C6105.1 (3)Cu1iii—Cu1—I1ii59.88 (4)
C7—N1—Cu1126.8 (2)Cu1i—Cu1—I1ii109.193 (17)
C6—N1—Cu1127.6 (2)N1—Cu1—Cu1ii147.30 (8)
N1—C7—N2113.5 (3)I1—Cu1—Cu1ii59.827 (16)
N1—C7—H7123.2I1iii—Cu1—Cu1ii107.917 (17)
N2—C7—H7123.2Cu1iii—Cu1—Cu1ii59.357 (16)
C6—C5—N2105.3 (3)Cu1i—Cu1—Cu1ii59.357 (16)
C6—C5—C4122.3 (3)I1ii—Cu1—Cu1ii58.696 (16)
N2—C5—C4132.4 (3)
C10—O2—C9—O1−0.9 (5)C5—C6—C1—C2−0.7 (5)
C10—O2—C9—C8176.7 (3)N1—C6—C1—C2179.2 (3)
O1—C9—C8—N21.1 (5)C6—C1—C2—C30.0 (6)
O2—C9—C8—N2−176.6 (3)C4—C3—C2—C10.4 (6)
C9—O2—C10—C11−150.6 (4)C7—N1—Cu1—I1135.7 (3)
C9—C8—N2—C768.8 (4)C6—N1—Cu1—I1−54.4 (3)
C9—C8—N2—C5−100.2 (4)C7—N1—Cu1—I1iii12.1 (3)
C6—N1—C7—N21.2 (4)C6—N1—Cu1—I1iii−177.9 (3)
Cu1—N1—C7—N2173.0 (2)C7—N1—Cu1—Cu1iii−47.5 (3)
C5—N2—C7—N1−1.7 (4)C6—N1—Cu1—Cu1iii122.5 (2)
C8—N2—C7—N1−172.6 (3)C7—N1—Cu1—Cu1i68.4 (3)
C7—N2—C5—C61.5 (3)C6—N1—Cu1—Cu1i−121.6 (3)
C8—N2—C5—C6172.1 (3)C7—N1—Cu1—I1ii−106.4 (3)
C7—N2—C5—C4179.3 (4)C6—N1—Cu1—I1ii63.5 (3)
C8—N2—C5—C4−10.0 (6)C7—N1—Cu1—Cu1ii−157.8 (2)
N2—C5—C6—C1179.2 (3)C6—N1—Cu1—Cu1ii12.1 (4)
C4—C5—C6—C11.0 (5)Cu1i—I1—Cu1—N1−145.25 (9)
N2—C5—C6—N1−0.8 (4)Cu1ii—I1—Cu1—N1145.04 (9)
C4—C5—C6—N1−178.9 (3)Cu1i—I1—Cu1—I1iii−27.64 (3)
C7—N1—C6—C1179.8 (4)Cu1ii—I1—Cu1—I1iii−97.34 (2)
Cu1—N1—C6—C18.2 (5)Cu1i—I1—Cu1—Cu1iii36.98 (3)
C7—N1—C6—C5−0.2 (4)Cu1ii—I1—Cu1—Cu1iii−32.73 (3)
Cu1—N1—C6—C5−171.9 (2)Cu1ii—I1—Cu1—Cu1i−69.703 (11)
C6—C5—C4—C3−0.6 (5)Cu1i—I1—Cu1—I1ii101.19 (3)
N2—C5—C4—C3−178.2 (3)Cu1ii—I1—Cu1—I1ii31.49 (3)
C5—C4—C3—C2−0.1 (6)Cu1i—I1—Cu1—Cu1ii69.703 (11)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O1iv0.972.603.531 (5)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O1i0.972.603.531 (5)162

Symmetry code: (i) .

  7 in total

1.  Discovery of novel benzimidazolones as potent non-nucleoside reverse transcriptase inhibitors active against wild-type and mutant HIV-1 strains.

Authors:  Maria Letizia Barreca; Angela Rao; Laura De Luca; Nunzio Iraci; Anna-Maria Monforte; Giovanni Maga; Erik De Clercq; Christophe Pannecouque; Jan Balzarini; Alba Chimirri
Journal:  Bioorg Med Chem Lett       Date:  2007-01-19       Impact factor: 2.823

2.  Metabolism of food-derived heterocyclic amines in nonhuman primates.

Authors:  E G Snyderwine; R J Turesky; K W Turteltaub; C D Davis; N Sadrieh; H A Schut; M Nagao; T Sugimura; U P Thorgeirsson; R H Adamson; S S Thorgeirsson
Journal:  Mutat Res       Date:  1997-05-12       Impact factor: 2.433

3.  Synthesis and inhibitory activity of new benzimidazole derivatives against Burkitt's lymphoma promotion.

Authors:  Mostafa M Ramla; Mohamed A Omar; H Tokuda; Hoda I El-Diwani
Journal:  Bioorg Med Chem       Date:  2007-04-10       Impact factor: 3.641

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Comparative biotransformation studies of MeIQx and PhIP in animal models and humans.

Authors:  R C Garner; T J Lightfoot; B C Cupid; D Russell; J M Coxhead; W Kutschera; A Priller; W Rom; P Steier; D J Alexander; S H Leveson; K H Dingley; R J Mauthe; K W Turteltaub
Journal:  Cancer Lett       Date:  1999-09-01       Impact factor: 8.679

6.  New derivatives of benzimidazole and their antimicrobial activity.

Authors:  E Cetínkaya; B Alici; Y Gök; R Durmaz; S Günal
Journal:  J Chemother       Date:  1999-04       Impact factor: 1.714

Review 7.  Heterocyclic amines in poultry products: a literature review.

Authors:  K Skog; A Solyakov
Journal:  Food Chem Toxicol       Date:  2002-08       Impact factor: 6.023

  7 in total

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