Literature DB >> 22719322

[2-Formyl-4-methyl-6-({2-[2-(4-nitro-benzyl-amino)-ethyl-amino]-ethyl-imino}-meth-yl)phenolato]nickel(II) perchlorate.

Yang Wang, Jia-Wei Mao, Hui-Ting Song, Hong Zhou.   

Abstract

In the unsymmetrical title complex, [Ni(C(20)H(23)N(4)O(4))]ClO(4), the coordination geometry for the Ni(II) atom can be described as square planar. The aromatic rings in the two ligands are almost vertical, with a dihedral angle of 85.3°. In the crystal, cations and anions are linked by weak C(N)-H⋯O hydrogen bonding.

Entities:  

Year:  2012        PMID: 22719322      PMCID: PMC3379101          DOI: 10.1107/S1600536812021058

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Schiff base complexes containing polynitro­gen ligands, see: Gao et al. (2002 ▶); Souza et al. (2009 ▶); Tsubomura et al. (2000 ▶) and for nickel–Schiff base complexes, see: Wu et al. (2011 ▶); Cheng et al. (2011 ▶); Wang et al. (2008 ▶). For the synthesis, see: Zhou et al. (2009 ▶). For the preparation of 2,6-diformyl-4-methyl­phenol, see: Long & Hendrickson (1983 ▶); Mandal et al. (1989 ▶) and for the preparation of N 1-(2-amino­eth­yl)-N 2-(4-nitro­benz­yl)ethane-1,2-diamine, see: Hu et al. (2011 ▶); Jian et al. (2004 ▶).

Experimental

Crystal data

[Ni(C20H23N4O4)]ClO4 M = 541.58 Triclinic, a = 9.5240 (14) Å b = 9.6423 (14) Å c = 14.024 (2) Å α = 97.897 (2)° β = 109.415 (3)° γ = 107.453 (2)° V = 1117.7 (3) Å3 Z = 2 Mo Kα radiation μ = 1.04 mm−1 T = 291 K 0.28 × 0.24 × 0.22 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.739, T max = 0.786 6276 measured reflections 4314 independent reflections 3004 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.138 S = 1.10 4314 reflections 308 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.44 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021058/kp2412sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021058/kp2412Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C20H23N4O4)]ClO4Z = 2
Mr = 541.58F(000) = 560
Triclinic, P1Dx = 1.609 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.5240 (14) ÅCell parameters from 3108 reflections
b = 9.6423 (14) Åθ = 2.3–28.0°
c = 14.024 (2) ŵ = 1.04 mm1
α = 97.897 (2)°T = 291 K
β = 109.415 (3)°Block, orange
γ = 107.453 (2)°0.28 × 0.24 × 0.22 mm
V = 1117.7 (3) Å3
Bruker SMART APEX CCD diffractometer4314 independent reflections
Radiation source: sealed tube3004 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
phi and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→11
Tmin = 0.739, Tmax = 0.786k = −9→11
6276 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0689P)2 + 0.0812P] where P = (Fo2 + 2Fc2)/3
4314 reflections(Δ/σ)max < 0.001
308 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2128 (6)0.2151 (5)0.6715 (3)0.0490 (11)
H10.31120.26160.72810.059*
C20.1781 (4)0.2941 (4)0.5895 (3)0.0349 (8)
C30.0262 (4)0.2311 (4)0.5055 (3)0.0361 (8)
H3−0.04890.14210.50390.043*
C4−0.0125 (4)0.3010 (4)0.4249 (3)0.0371 (8)
C50.1016 (5)0.4324 (5)0.4308 (3)0.0474 (10)
H50.07620.47980.37760.057*
C60.2522 (5)0.4988 (4)0.5112 (3)0.0370 (8)
C70.2919 (4)0.4294 (4)0.5956 (3)0.0328 (8)
C80.3605 (5)0.6361 (5)0.5105 (3)0.0444 (9)
H80.33180.67090.45100.053*
C90.5962 (5)0.8644 (5)0.5798 (3)0.0418 (9)
H9A0.56530.94450.60550.050*
H9B0.58280.86060.50770.050*
C100.7678 (5)0.8907 (5)0.6473 (3)0.0456 (10)
H10A0.80730.82620.61280.055*
H10B0.83650.99490.66160.055*
C110.9105 (5)0.8406 (5)0.8155 (3)0.0472 (10)
H11A0.99460.93940.84980.057*
H11B0.94770.77920.77640.057*
C120.8651 (5)0.7671 (4)0.8951 (3)0.0400 (9)
H12A0.95050.73810.93620.048*
H12B0.84710.83680.94220.048*
C130.6434 (4)0.5655 (4)0.9063 (3)0.0353 (8)
H13A0.55980.46800.86660.042*
H13B0.72460.54950.96240.042*
C140.5743 (4)0.6609 (4)0.9526 (3)0.0312 (7)
C150.6606 (5)0.7570 (4)1.0532 (3)0.0390 (9)
H150.76320.76121.09120.047*
C160.5967 (5)0.8476 (5)1.0984 (3)0.0509 (11)
H160.65670.91501.16440.061*
C170.4424 (4)0.8333 (4)1.0419 (3)0.0341 (8)
C180.3494 (5)0.7342 (5)0.9422 (3)0.0424 (9)
H180.24460.72610.90620.051*
C190.4163 (5)0.6489 (5)0.8986 (3)0.0496 (11)
H190.35600.58250.83230.060*
C20−0.1760 (5)0.2319 (5)0.3341 (3)0.0455 (10)
H20A−0.22570.30530.32740.068*
H20B−0.24220.14610.34720.068*
H20C−0.16340.20080.27040.068*
Cl10.88876 (12)0.32607 (11)0.79500 (8)0.0463 (3)
N20.4978 (4)0.7171 (3)0.5876 (3)0.0393 (7)
N30.7633 (3)0.8528 (3)0.7458 (2)0.0307 (6)
H3A0.74380.92590.78170.037*
N40.7161 (4)0.6317 (4)0.8366 (3)0.0463 (8)
H40.75130.56150.81310.056*
N50.3722 (4)0.9276 (3)1.0862 (3)0.0393 (7)
Ni10.58985 (5)0.66844 (6)0.70964 (4)0.03821 (17)
O10.4300 (3)0.4860 (3)0.6787 (2)0.0460 (7)
O20.1258 (3)0.0957 (3)0.6725 (2)0.0457 (7)
O30.4487 (4)1.0016 (4)1.1791 (2)0.0542 (8)
O40.2448 (3)0.9331 (3)1.0331 (2)0.0458 (7)
O110.9790 (4)0.4623 (4)0.8000 (3)0.0642 (10)
O120.8093 (4)0.2515 (3)0.6896 (2)0.0553 (8)
O130.9309 (4)0.2177 (3)0.8403 (2)0.0494 (7)
O140.7706 (4)0.3386 (3)0.8214 (3)0.0527 (8)
U11U22U33U12U13U23
C10.057 (3)0.034 (2)0.0290 (19)−0.0028 (19)0.0020 (18)0.0108 (16)
C20.0257 (16)0.0219 (16)0.0395 (19)0.0004 (13)0.0019 (14)0.0016 (14)
C30.0340 (19)0.0333 (18)0.0306 (18)0.0112 (16)0.0044 (15)0.0006 (15)
C40.0330 (18)0.041 (2)0.0288 (17)0.0206 (16)0.0001 (14)−0.0013 (15)
C50.039 (2)0.048 (2)0.035 (2)0.0113 (18)−0.0043 (17)0.0095 (17)
C60.0396 (19)0.0278 (17)0.042 (2)0.0162 (15)0.0107 (16)0.0097 (15)
C70.0268 (16)0.0225 (16)0.0392 (19)0.0095 (14)0.0007 (14)0.0084 (14)
C80.046 (2)0.038 (2)0.043 (2)0.0146 (18)0.0089 (18)0.0186 (17)
C90.045 (2)0.040 (2)0.036 (2)0.0135 (17)0.0109 (17)0.0121 (16)
C100.051 (2)0.037 (2)0.042 (2)0.0060 (18)0.0174 (19)0.0155 (18)
C110.041 (2)0.043 (2)0.047 (2)0.0061 (18)0.0127 (18)0.0121 (18)
C120.0399 (19)0.0326 (18)0.0293 (18)0.0033 (16)0.0019 (15)0.0061 (14)
C130.0355 (19)0.0280 (17)0.042 (2)0.0137 (15)0.0111 (16)0.0147 (15)
C140.0332 (18)0.0202 (15)0.0344 (18)0.0082 (14)0.0076 (14)0.0083 (13)
C150.046 (2)0.0255 (18)0.0349 (19)0.0162 (16)0.0035 (17)0.0025 (14)
C160.049 (2)0.048 (2)0.037 (2)0.014 (2)0.0058 (18)−0.0099 (18)
C170.0376 (19)0.0390 (19)0.0334 (19)0.0109 (16)0.0239 (16)0.0147 (15)
C180.037 (2)0.049 (2)0.037 (2)0.0136 (18)0.0078 (16)0.0194 (17)
C190.039 (2)0.042 (2)0.038 (2)0.0032 (18)−0.0005 (17)−0.0135 (17)
C200.040 (2)0.046 (2)0.035 (2)0.0166 (19)0.0017 (17)−0.0023 (17)
Cl10.0463 (6)0.0431 (6)0.0465 (6)0.0159 (4)0.0142 (4)0.0146 (4)
N20.0400 (17)0.0305 (16)0.0445 (18)0.0154 (14)0.0107 (14)0.0117 (13)
N30.0364 (16)0.0258 (14)0.0349 (16)0.0115 (12)0.0196 (13)0.0092 (12)
N40.0458 (19)0.0414 (18)0.0373 (18)0.0090 (16)0.0078 (15)0.0043 (14)
N50.0464 (18)0.0294 (15)0.0393 (18)0.0135 (14)0.0147 (15)0.0071 (13)
Ni10.0278 (3)0.0389 (3)0.0393 (3)0.0069 (2)0.0085 (2)0.0086 (2)
O10.0350 (14)0.0392 (15)0.0425 (16)0.0036 (12)−0.0002 (12)0.0087 (12)
O20.0385 (15)0.0402 (15)0.0300 (13)−0.0050 (12)−0.0028 (11)0.0086 (11)
O30.0502 (17)0.0526 (18)0.0440 (17)0.0139 (14)0.0136 (14)−0.0118 (14)
O40.0422 (15)0.0493 (17)0.0461 (16)0.0191 (13)0.0152 (13)0.0142 (13)
O110.056 (2)0.055 (2)0.0561 (19)−0.0056 (16)0.0158 (16)0.0115 (15)
O120.0471 (16)0.0429 (16)0.0541 (18)0.0146 (13)−0.0071 (14)0.0198 (14)
O130.0488 (16)0.0480 (17)0.0433 (15)0.0168 (13)0.0077 (13)0.0165 (13)
O140.0452 (16)0.0505 (17)0.063 (2)0.0222 (14)0.0182 (15)0.0161 (15)
C1—O21.205 (5)C13—C141.478 (5)
C1—C21.466 (5)C13—N41.483 (5)
C1—H10.9300C13—H13A0.9700
C2—C71.394 (5)C13—H13B0.9700
C2—C31.411 (5)C14—C151.392 (5)
C3—C41.397 (5)C14—C191.402 (5)
C3—H30.9300C15—C161.400 (6)
C4—C51.370 (6)C15—H150.9300
C4—C201.522 (5)C16—C171.372 (6)
C5—C61.384 (5)C16—H160.9300
C5—H50.9300C17—C181.398 (5)
C6—C81.417 (6)C17—N51.465 (5)
C6—C71.437 (5)C18—C191.376 (6)
C7—O11.327 (4)C18—H180.9300
C8—N21.305 (5)C19—H190.9300
C8—H80.9300C20—H20A0.9600
C9—N21.489 (5)C20—H20B0.9600
C9—C101.513 (6)C20—H20C0.9600
C9—H9A0.9700Cl1—O111.314 (3)
C9—H9B0.9700Cl1—O141.328 (3)
C10—N31.487 (5)Cl1—O121.383 (3)
C10—H10A0.9700Cl1—O131.386 (3)
C10—H10B0.9700N2—Ni11.841 (3)
C11—N31.468 (5)N3—Ni11.893 (3)
C11—C121.513 (6)N3—H3A0.9100
C11—H11A0.9700N4—Ni11.936 (4)
C11—H11B0.9700N4—H40.9100
C12—N41.487 (5)N5—O41.216 (4)
C12—H12A0.9700N5—O31.241 (4)
C12—H12B0.9700Ni1—O11.829 (3)
O2—C1—C2126.2 (4)C15—C14—C13120.8 (3)
O2—C1—H1116.9C19—C14—C13120.4 (3)
C2—C1—H1116.9C14—C15—C16121.5 (4)
C7—C2—C3121.0 (3)C14—C15—H15119.2
C7—C2—C1120.5 (3)C16—C15—H15119.2
C3—C2—C1118.4 (3)C17—C16—C15117.5 (4)
C4—C3—C2120.7 (3)C17—C16—H16121.2
C4—C3—H3119.6C15—C16—H16121.2
C2—C3—H3119.6C16—C17—C18122.8 (4)
C5—C4—C3117.6 (3)C16—C17—N5119.0 (3)
C5—C4—C20121.9 (3)C18—C17—N5118.1 (3)
C3—C4—C20120.5 (4)C19—C18—C17118.5 (4)
C4—C5—C6124.0 (4)C19—C18—H18120.7
C4—C5—H5118.0C17—C18—H18120.8
C6—C5—H5118.0C18—C19—C14120.9 (4)
C5—C6—C8119.4 (4)C18—C19—H19119.6
C5—C6—C7118.8 (3)C14—C19—H19119.6
C8—C6—C7121.7 (3)C4—C20—H20A109.5
O1—C7—C2118.2 (3)C4—C20—H20B109.5
O1—C7—C6124.0 (3)H20A—C20—H20B109.5
C2—C7—C6117.8 (3)C4—C20—H20C109.5
N2—C8—C6124.6 (4)H20A—C20—H20C109.5
N2—C8—H8117.7H20B—C20—H20C109.5
C6—C8—H8117.7O11—Cl1—O14107.3 (2)
N2—C9—C10105.6 (3)O11—Cl1—O12106.0 (2)
N2—C9—H9A110.6O14—Cl1—O12102.5 (2)
C10—C9—H9A110.6O11—Cl1—O13129.9 (2)
N2—C9—H9B110.6O14—Cl1—O13105.0 (2)
C10—C9—H9B110.6O12—Cl1—O13103.12 (18)
H9A—C9—H9B108.8C8—N2—C9119.4 (3)
N3—C10—C9105.2 (3)C8—N2—Ni1126.6 (3)
N3—C10—H10A110.7C9—N2—Ni1114.0 (2)
C9—C10—H10A110.7C11—N3—C10115.1 (3)
N3—C10—H10B110.7C11—N3—Ni1109.1 (2)
C9—C10—H10B110.7C10—N3—Ni1108.2 (2)
H10A—C10—H10B108.8C11—N3—H3A108.1
N3—C11—C12105.3 (3)C10—N3—H3A108.1
N3—C11—H11A110.7Ni1—N3—H3A108.1
C12—C11—H11A110.7C13—N4—C12112.6 (3)
N3—C11—H11B110.7C13—N4—Ni1121.8 (3)
C12—C11—H11B110.7C12—N4—Ni1109.0 (3)
H11A—C11—H11B108.8C13—N4—H4103.8
N4—C12—C11107.6 (3)C12—N4—H4103.8
N4—C12—H12A110.2Ni1—N4—H4103.8
C11—C12—H12A110.2O4—N5—O3122.0 (3)
N4—C12—H12B110.2O4—N5—C17120.8 (3)
C11—C12—H12B110.2O3—N5—C17117.2 (3)
H12A—C12—H12B108.5O1—Ni1—N296.40 (13)
C14—C13—N4113.3 (3)O1—Ni1—N3176.88 (13)
C14—C13—H13A108.9N2—Ni1—N386.25 (13)
N4—C13—H13A108.9O1—Ni1—N490.39 (14)
C14—C13—H13B108.9N2—Ni1—N4171.64 (15)
N4—C13—H13B108.9N3—Ni1—N486.84 (14)
H13A—C13—H13B107.7C7—O1—Ni1126.2 (2)
C15—C14—C19118.7 (4)
O2—C1—C2—C7−177.4 (5)C13—C14—C19—C18178.2 (4)
O2—C1—C2—C33.6 (7)C6—C8—N2—C9−176.1 (4)
C7—C2—C3—C41.6 (6)C6—C8—N2—Ni14.6 (7)
C1—C2—C3—C4−179.4 (4)C10—C9—N2—C8−153.0 (4)
C2—C3—C4—C5−0.4 (6)C10—C9—N2—Ni126.4 (4)
C2—C3—C4—C20179.6 (4)C12—C11—N3—C10−167.1 (3)
C3—C4—C5—C60.5 (6)C12—C11—N3—Ni1−45.2 (4)
C20—C4—C5—C6−179.4 (4)C9—C10—N3—C11168.3 (3)
C4—C5—C6—C8−179.1 (4)C9—C10—N3—Ni146.0 (3)
C4—C5—C6—C7−1.8 (7)C14—C13—N4—C1269.5 (4)
C3—C2—C7—O1177.3 (3)C14—C13—N4—Ni1−62.8 (4)
C1—C2—C7—O1−1.7 (6)C11—C12—N4—C13−169.7 (3)
C3—C2—C7—C6−2.8 (6)C11—C12—N4—Ni1−31.3 (4)
C1—C2—C7—C6178.2 (4)C16—C17—N5—O4169.9 (4)
C5—C6—C7—O1−177.2 (4)C18—C17—N5—O4−8.8 (5)
C8—C6—C7—O10.1 (6)C16—C17—N5—O3−9.5 (5)
C5—C6—C7—C22.9 (6)C18—C17—N5—O3171.8 (3)
C8—C6—C7—C2−179.8 (4)C8—N2—Ni1—O10.3 (4)
C5—C6—C8—N2171.9 (4)C9—N2—Ni1—O1−179.0 (3)
C7—C6—C8—N2−5.4 (7)C8—N2—Ni1—N3178.7 (4)
N2—C9—C10—N3−45.3 (4)C9—N2—Ni1—N3−0.6 (3)
N3—C11—C12—N449.4 (4)C11—N3—Ni1—N2−152.1 (3)
N4—C13—C14—C15−97.3 (4)C10—N3—Ni1—N2−26.2 (3)
N4—C13—C14—C1986.9 (4)C11—N3—Ni1—N423.2 (3)
C19—C14—C15—C16−3.8 (6)C10—N3—Ni1—N4149.1 (3)
C13—C14—C15—C16−179.7 (4)C13—N4—Ni1—O1−42.5 (3)
C14—C15—C16—C173.0 (6)C12—N4—Ni1—O1−176.3 (3)
C15—C16—C17—C18−0.6 (6)C13—N4—Ni1—N3138.9 (3)
C15—C16—C17—N5−179.3 (4)C12—N4—Ni1—N35.1 (3)
C16—C17—C18—C19−0.8 (6)C2—C7—O1—Ni1−174.5 (3)
N5—C17—C18—C19177.8 (4)C6—C7—O1—Ni15.7 (6)
C17—C18—C19—C140.0 (6)N2—Ni1—O1—C7−5.3 (4)
C15—C14—C19—C182.3 (6)N4—Ni1—O1—C7179.6 (3)
Table 1

Selected bond lengths (Å)

N2—Ni11.841 (3)
N3—Ni11.893 (3)
N4—Ni11.936 (4)
Ni1—O11.829 (3)
  2 in total

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2.  DNA photonuclease activity of four new copper(II) complexes under UV and red light: theoretical/experimental correlations with active species generation.

Authors:  Bernardo de Souza; Adailton J Bortoluzzi; Tiago Bortolotto; Franciele Luane Fischer; Hernán Terenzi; Dalva E C Ferreira; William R Rocha; Ademir Neves
Journal:  Dalton Trans       Date:  2009-12-23       Impact factor: 4.390

  2 in total

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