| Literature DB >> 22719321 |
Guang-Rui Yang, Juan Ren, Guo-Ting Li.
Abstract
In the title compound, [Co(NCS)(2)(C(19)H(17)N(5)O(2))(2)(CH(3)OH)(2)], the Co(II) atom lies on an inversion center and is coordinated by two isothio-cyanate N atoms, two O atoms of methanol mol-ecules and two pyridine N atoms in a slightly distorted octa-hedral environment. Inter-molecular O-H⋯O and N-H⋯N hydrogen bonds join the complex mol-ecules into layers parallel to the bc plane.Entities:
Year: 2012 PMID: 22719321 PMCID: PMC3379100 DOI: 10.1107/S1600536812020326
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(NCS)2(C19H17N5O2)2(CH4O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4895 reflections |
| θ = 2.1–30.8° | |
| µ = 0.55 mm−1 | |
| β = 100.13 (3)° | Block, pink |
| 0.22 × 0.21 × 0.18 mm | |
| Siemens SMART CCD diffractometer | 3803 independent reflections |
| Radiation source: fine-focus sealed tube | 3435 reflections with |
| Graphite monochromator | |
| ω scan | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 21676 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3803 reflections | (Δ/σ)max < 0.001 |
| 291 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.18 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.0000 | 0.0000 | 0.5000 | 0.03328 (16) | |
| S1 | −0.19041 (9) | 0.20444 (5) | 0.66597 (7) | 0.0607 (3) | |
| O1 | 0.3791 (3) | −0.10454 (13) | 0.85021 (19) | 0.0727 (7) | |
| O2 | 0.0978 (2) | 0.10649 (12) | 1.22010 (16) | 0.0622 (6) | |
| O3 | −0.0365 (2) | 0.08401 (12) | 0.38047 (17) | 0.0472 (5) | |
| N1 | 0.2436 (2) | 0.02348 (12) | 1.01554 (16) | 0.0373 (5) | |
| N2 | 0.3961 (2) | 0.02276 (14) | 0.86373 (18) | 0.0463 (6) | |
| H2A | 0.3683 | 0.0635 | 0.8935 | 0.056* | |
| N3 | 0.2057 (2) | 0.16022 (13) | 1.09943 (17) | 0.0443 (6) | |
| H3A | 0.2468 | 0.1532 | 1.0451 | 0.053* | |
| N4 | 0.2142 (2) | 0.03865 (13) | 0.54496 (17) | 0.0397 (5) | |
| N5 | 0.3318 (3) | 0.30281 (16) | 1.4128 (2) | 0.0604 (7) | |
| N6 | −0.0655 (3) | 0.07304 (14) | 0.60659 (18) | 0.0458 (6) | |
| C1 | 0.3501 (3) | −0.04486 (18) | 0.8894 (2) | 0.0471 (7) | |
| C2 | 0.2582 (3) | −0.04329 (16) | 0.9707 (2) | 0.0409 (7) | |
| C3 | 0.1951 (3) | −0.10950 (17) | 0.9980 (2) | 0.0533 (8) | |
| H3 | 0.2049 | −0.1558 | 0.9628 | 0.064* | |
| C4 | 0.1183 (3) | −0.10634 (19) | 1.0772 (3) | 0.0583 (9) | |
| H4 | 0.0753 | −0.1508 | 1.0983 | 0.070* | |
| C5 | 0.1043 (3) | −0.03805 (18) | 1.1255 (2) | 0.0497 (8) | |
| H5 | 0.0521 | −0.0346 | 1.1806 | 0.060* | |
| C6 | 0.1676 (3) | 0.02553 (15) | 1.0922 (2) | 0.0386 (7) | |
| C7 | 0.1543 (3) | 0.10093 (17) | 1.1426 (2) | 0.0419 (7) | |
| C8 | 0.4895 (3) | 0.0323 (2) | 0.7894 (2) | 0.0536 (8) | |
| H8A | 0.5457 | −0.0145 | 0.7886 | 0.064* | |
| H8B | 0.5554 | 0.0742 | 0.8134 | 0.064* | |
| C9 | 0.4171 (3) | 0.04924 (16) | 0.6792 (2) | 0.0405 (7) | |
| C10 | 0.2796 (3) | 0.02987 (16) | 0.6441 (2) | 0.0420 (7) | |
| H10 | 0.2275 | 0.0090 | 0.6926 | 0.050* | |
| C11 | 0.2886 (3) | 0.06854 (17) | 0.4779 (2) | 0.0509 (8) | |
| H11 | 0.2453 | 0.0745 | 0.4071 | 0.061* | |
| C12 | 0.4252 (4) | 0.0909 (2) | 0.5080 (3) | 0.0633 (9) | |
| H12 | 0.4747 | 0.1132 | 0.4588 | 0.076* | |
| C13 | 0.4904 (3) | 0.08126 (19) | 0.6091 (3) | 0.0566 (9) | |
| H13 | 0.5853 | 0.0965 | 0.6306 | 0.068* | |
| C14 | 0.1958 (4) | 0.23665 (17) | 1.1399 (2) | 0.0537 (8) | |
| H14A | 0.0988 | 0.2452 | 1.1519 | 0.064* | |
| H14B | 0.2145 | 0.2736 | 1.0867 | 0.064* | |
| C15 | 0.2965 (3) | 0.25142 (15) | 1.2399 (2) | 0.0419 (7) | |
| C16 | 0.4374 (4) | 0.23449 (18) | 1.2524 (3) | 0.0594 (9) | |
| H16 | 0.4747 | 0.2111 | 1.1975 | 0.071* | |
| C17 | 0.5232 (4) | 0.2516 (2) | 1.3443 (3) | 0.0665 (10) | |
| H17 | 0.6207 | 0.2403 | 1.3541 | 0.080* | |
| C18 | 0.4669 (4) | 0.28538 (19) | 1.4224 (3) | 0.0620 (9) | |
| H18 | 0.5273 | 0.2968 | 1.4861 | 0.074* | |
| C19 | 0.2503 (3) | 0.28563 (17) | 1.3221 (2) | 0.0522 (8) | |
| H19 | 0.1533 | 0.2980 | 1.3139 | 0.063* | |
| C20 | −0.1081 (5) | 0.1531 (2) | 0.3779 (3) | 0.0936 (15) | |
| H20A | −0.1899 | 0.1473 | 0.4122 | 0.140* | |
| H20B | −0.1394 | 0.1686 | 0.3053 | 0.140* | |
| H20C | −0.0453 | 0.1919 | 0.4143 | 0.140* | |
| C21 | −0.1174 (3) | 0.12750 (16) | 0.6318 (2) | 0.0387 (6) | |
| H1 | 0.005 (3) | 0.0815 (17) | 0.336 (2) | 0.045 (10)* |
| Co1 | 0.0331 (3) | 0.0375 (3) | 0.0294 (3) | 0.0044 (2) | 0.0059 (2) | 0.0039 (2) |
| S1 | 0.0654 (6) | 0.0427 (5) | 0.0790 (6) | 0.0000 (4) | 0.0261 (5) | −0.0131 (4) |
| O1 | 0.0898 (19) | 0.0547 (14) | 0.0772 (17) | 0.0137 (13) | 0.0244 (14) | −0.0174 (13) |
| O2 | 0.0804 (17) | 0.0688 (15) | 0.0449 (13) | 0.0054 (12) | 0.0318 (12) | 0.0063 (11) |
| O3 | 0.0517 (13) | 0.0519 (13) | 0.0415 (12) | 0.0129 (10) | 0.0179 (11) | 0.0156 (10) |
| N1 | 0.0372 (13) | 0.0400 (13) | 0.0322 (12) | 0.0034 (10) | −0.0006 (10) | −0.0006 (10) |
| N2 | 0.0466 (15) | 0.0544 (16) | 0.0378 (13) | 0.0025 (12) | 0.0067 (11) | −0.0090 (11) |
| N3 | 0.0574 (16) | 0.0449 (14) | 0.0341 (13) | −0.0024 (12) | 0.0176 (12) | −0.0015 (11) |
| N4 | 0.0358 (13) | 0.0479 (14) | 0.0352 (13) | −0.0013 (11) | 0.0063 (10) | 0.0022 (11) |
| N5 | 0.0644 (19) | 0.0654 (18) | 0.0547 (17) | −0.0038 (15) | 0.0195 (15) | −0.0203 (14) |
| N6 | 0.0497 (15) | 0.0484 (15) | 0.0415 (14) | 0.0059 (12) | 0.0143 (12) | −0.0012 (12) |
| C1 | 0.0476 (18) | 0.0490 (19) | 0.0406 (17) | 0.0103 (15) | −0.0035 (14) | −0.0062 (15) |
| C2 | 0.0404 (16) | 0.0441 (17) | 0.0344 (15) | 0.0043 (13) | −0.0043 (12) | 0.0014 (13) |
| C3 | 0.056 (2) | 0.0406 (18) | 0.057 (2) | 0.0008 (15) | −0.0057 (16) | −0.0021 (15) |
| C4 | 0.060 (2) | 0.051 (2) | 0.062 (2) | −0.0100 (16) | 0.0035 (17) | 0.0104 (17) |
| C5 | 0.0493 (18) | 0.057 (2) | 0.0419 (17) | −0.0049 (15) | 0.0047 (14) | 0.0100 (15) |
| C6 | 0.0362 (15) | 0.0459 (17) | 0.0321 (15) | 0.0021 (13) | 0.0016 (12) | 0.0063 (12) |
| C7 | 0.0413 (16) | 0.0553 (19) | 0.0288 (15) | 0.0063 (14) | 0.0057 (13) | 0.0040 (13) |
| C8 | 0.0359 (17) | 0.077 (2) | 0.0457 (18) | −0.0008 (16) | 0.0012 (14) | −0.0087 (16) |
| C9 | 0.0336 (15) | 0.0451 (16) | 0.0421 (16) | 0.0006 (13) | 0.0049 (13) | −0.0066 (13) |
| C10 | 0.0400 (16) | 0.0530 (18) | 0.0337 (15) | −0.0002 (14) | 0.0082 (13) | 0.0005 (13) |
| C11 | 0.0484 (18) | 0.062 (2) | 0.0426 (18) | −0.0015 (16) | 0.0094 (15) | 0.0125 (15) |
| C12 | 0.057 (2) | 0.080 (2) | 0.058 (2) | −0.0173 (18) | 0.0216 (17) | 0.0120 (18) |
| C13 | 0.0409 (18) | 0.068 (2) | 0.061 (2) | −0.0175 (16) | 0.0086 (16) | −0.0059 (17) |
| C14 | 0.070 (2) | 0.0449 (18) | 0.0483 (18) | 0.0091 (16) | 0.0159 (16) | −0.0003 (15) |
| C15 | 0.0495 (18) | 0.0343 (15) | 0.0444 (17) | 0.0026 (13) | 0.0153 (14) | −0.0027 (13) |
| C16 | 0.063 (2) | 0.061 (2) | 0.060 (2) | 0.0124 (17) | 0.0266 (18) | −0.0089 (17) |
| C17 | 0.053 (2) | 0.073 (2) | 0.075 (3) | 0.0072 (18) | 0.0156 (19) | −0.009 (2) |
| C18 | 0.065 (2) | 0.057 (2) | 0.063 (2) | −0.0105 (18) | 0.0105 (18) | −0.0089 (18) |
| C19 | 0.0488 (18) | 0.0533 (19) | 0.059 (2) | 0.0015 (15) | 0.0220 (16) | −0.0111 (16) |
| C20 | 0.148 (4) | 0.068 (2) | 0.072 (3) | 0.060 (3) | 0.040 (3) | 0.029 (2) |
| C21 | 0.0366 (16) | 0.0423 (16) | 0.0377 (16) | −0.0074 (13) | 0.0080 (12) | −0.0005 (13) |
| Co1—N6i | 2.074 (2) | C4—H4 | 0.9500 |
| Co1—N6 | 2.074 (2) | C5—C6 | 1.384 (4) |
| Co1—O3 | 2.134 (2) | C5—H5 | 0.9500 |
| Co1—O3i | 2.134 (2) | C6—C7 | 1.499 (4) |
| Co1—N4i | 2.162 (2) | C8—C9 | 1.513 (4) |
| Co1—N4 | 2.162 (2) | C8—H8A | 0.9900 |
| S1—C21 | 1.627 (3) | C8—H8B | 0.9900 |
| O1—C1 | 1.224 (3) | C9—C10 | 1.371 (4) |
| O2—C7 | 1.234 (3) | C9—C13 | 1.373 (4) |
| O3—C20 | 1.399 (4) | C10—H10 | 0.9500 |
| O3—H1 | 0.76 (3) | C11—C12 | 1.369 (4) |
| N1—C2 | 1.333 (3) | C11—H11 | 0.9500 |
| N1—C6 | 1.341 (3) | C12—C13 | 1.369 (4) |
| N2—C1 | 1.336 (4) | C12—H12 | 0.9500 |
| N2—C8 | 1.447 (4) | C13—H13 | 0.9500 |
| N2—H2A | 0.8800 | C14—C15 | 1.507 (4) |
| N3—C7 | 1.325 (3) | C14—H14A | 0.9900 |
| N3—C14 | 1.456 (4) | C14—H14B | 0.9900 |
| N3—H3A | 0.8800 | C15—C19 | 1.372 (4) |
| N4—C11 | 1.334 (3) | C15—C16 | 1.377 (4) |
| N4—C10 | 1.344 (3) | C16—C17 | 1.366 (5) |
| N5—C18 | 1.327 (4) | C16—H16 | 0.9500 |
| N5—C19 | 1.335 (4) | C17—C18 | 1.372 (5) |
| N6—C21 | 1.158 (3) | C17—H17 | 0.9500 |
| C1—C2 | 1.498 (4) | C18—H18 | 0.9500 |
| C2—C3 | 1.393 (4) | C19—H19 | 0.9500 |
| C3—C4 | 1.375 (4) | C20—H20A | 0.9800 |
| C3—H3 | 0.9500 | C20—H20B | 0.9800 |
| C4—C5 | 1.377 (4) | C20—H20C | 0.9800 |
| N6i—Co1—N6 | 180.00 (9) | N3—C7—C6 | 116.4 (2) |
| N6i—Co1—O3 | 88.41 (9) | N2—C8—C9 | 114.9 (2) |
| N6—Co1—O3 | 91.59 (9) | N2—C8—H8A | 108.6 |
| N6i—Co1—O3i | 91.59 (9) | C9—C8—H8A | 108.6 |
| N6—Co1—O3i | 88.41 (9) | N2—C8—H8B | 108.6 |
| O3—Co1—O3i | 180.0 | C9—C8—H8B | 108.6 |
| N6i—Co1—N4i | 90.80 (9) | H8A—C8—H8B | 107.5 |
| N6—Co1—N4i | 89.20 (9) | C10—C9—C13 | 117.6 (3) |
| O3—Co1—N4i | 89.60 (9) | C10—C9—C8 | 121.8 (3) |
| O3i—Co1—N4i | 90.40 (9) | C13—C9—C8 | 120.4 (3) |
| N6i—Co1—N4 | 89.20 (9) | N4—C10—C9 | 123.9 (3) |
| N6—Co1—N4 | 90.80 (9) | N4—C10—H10 | 118.1 |
| O3—Co1—N4 | 90.40 (9) | C9—C10—H10 | 118.1 |
| O3i—Co1—N4 | 89.60 (9) | N4—C11—C12 | 122.0 (3) |
| N4i—Co1—N4 | 180.0 | N4—C11—H11 | 119.0 |
| C20—O3—Co1 | 129.8 (2) | C12—C11—H11 | 119.0 |
| C20—O3—H1 | 111 (2) | C13—C12—C11 | 119.9 (3) |
| Co1—O3—H1 | 118 (2) | C13—C12—H12 | 120.1 |
| C2—N1—C6 | 117.7 (2) | C11—C12—H12 | 120.1 |
| C1—N2—C8 | 123.2 (3) | C12—C13—C9 | 119.2 (3) |
| C1—N2—H2A | 118.4 | C12—C13—H13 | 120.4 |
| C8—N2—H2A | 118.4 | C9—C13—H13 | 120.4 |
| C7—N3—C14 | 121.5 (2) | N3—C14—C15 | 113.6 (2) |
| C7—N3—H3A | 119.2 | N3—C14—H14A | 108.9 |
| C14—N3—H3A | 119.2 | C15—C14—H14A | 108.9 |
| C11—N4—C10 | 117.3 (2) | N3—C14—H14B | 108.9 |
| C11—N4—Co1 | 123.2 (2) | C15—C14—H14B | 108.9 |
| C10—N4—Co1 | 119.40 (18) | H14A—C14—H14B | 107.7 |
| C18—N5—C19 | 116.7 (3) | C19—C15—C16 | 117.1 (3) |
| C21—N6—Co1 | 154.7 (2) | C19—C15—C14 | 120.2 (3) |
| O1—C1—N2 | 123.5 (3) | C16—C15—C14 | 122.7 (3) |
| O1—C1—C2 | 121.3 (3) | C17—C16—C15 | 119.4 (3) |
| N2—C1—C2 | 115.2 (3) | C17—C16—H16 | 120.3 |
| N1—C2—C3 | 122.9 (3) | C15—C16—H16 | 120.3 |
| N1—C2—C1 | 116.7 (3) | C16—C17—C18 | 119.2 (3) |
| C3—C2—C1 | 120.5 (3) | C16—C17—H17 | 120.4 |
| C4—C3—C2 | 118.5 (3) | C18—C17—H17 | 120.4 |
| C4—C3—H3 | 120.7 | N5—C18—C17 | 122.9 (3) |
| C2—C3—H3 | 120.7 | N5—C18—H18 | 118.5 |
| C3—C4—C5 | 119.3 (3) | C17—C18—H18 | 118.5 |
| C3—C4—H4 | 120.4 | N5—C19—C15 | 124.6 (3) |
| C5—C4—H4 | 120.4 | N5—C19—H19 | 117.7 |
| C4—C5—C6 | 118.7 (3) | C15—C19—H19 | 117.7 |
| C4—C5—H5 | 120.7 | O3—C20—H20A | 109.5 |
| C6—C5—H5 | 120.7 | O3—C20—H20B | 109.5 |
| N1—C6—C5 | 122.9 (3) | H20A—C20—H20B | 109.5 |
| N1—C6—C7 | 116.9 (2) | O3—C20—H20C | 109.5 |
| C5—C6—C7 | 120.2 (3) | H20A—C20—H20C | 109.5 |
| O2—C7—N3 | 122.6 (3) | H20B—C20—H20C | 109.5 |
| O2—C7—C6 | 121.0 (3) | N6—C21—S1 | 179.4 (3) |
| N6i—Co1—O3—C20 | 167.7 (3) | C4—C5—C6—C7 | 179.8 (3) |
| N6—Co1—O3—C20 | −12.3 (3) | C14—N3—C7—O2 | −1.4 (4) |
| N4i—Co1—O3—C20 | 76.9 (3) | C14—N3—C7—C6 | 178.5 (2) |
| N4—Co1—O3—C20 | −103.1 (3) | N1—C6—C7—O2 | −173.0 (3) |
| N6i—Co1—N4—C11 | 57.5 (2) | C5—C6—C7—O2 | 6.5 (4) |
| N6—Co1—N4—C11 | −122.5 (2) | N1—C6—C7—N3 | 7.2 (4) |
| O3—Co1—N4—C11 | −30.9 (2) | C5—C6—C7—N3 | −173.4 (3) |
| O3i—Co1—N4—C11 | 149.1 (2) | C1—N2—C8—C9 | 94.9 (3) |
| N6i—Co1—N4—C10 | −119.7 (2) | N2—C8—C9—C10 | −22.9 (4) |
| N6—Co1—N4—C10 | 60.3 (2) | N2—C8—C9—C13 | 160.6 (3) |
| O3—Co1—N4—C10 | 151.9 (2) | C11—N4—C10—C9 | −0.5 (4) |
| O3i—Co1—N4—C10 | −28.1 (2) | Co1—N4—C10—C9 | 176.9 (2) |
| O3—Co1—N6—C21 | 12.0 (5) | C13—C9—C10—N4 | 1.7 (4) |
| O3i—Co1—N6—C21 | −168.0 (5) | C8—C9—C10—N4 | −174.9 (3) |
| N4i—Co1—N6—C21 | −77.6 (5) | C10—N4—C11—C12 | −1.2 (4) |
| N4—Co1—N6—C21 | 102.4 (5) | Co1—N4—C11—C12 | −178.4 (2) |
| C8—N2—C1—O1 | −2.3 (4) | N4—C11—C12—C13 | 1.5 (5) |
| C8—N2—C1—C2 | 177.9 (2) | C11—C12—C13—C9 | −0.2 (5) |
| C6—N1—C2—C3 | 1.8 (4) | C10—C9—C13—C12 | −1.4 (5) |
| C6—N1—C2—C1 | −176.7 (2) | C8—C9—C13—C12 | 175.3 (3) |
| O1—C1—C2—N1 | 173.9 (3) | C7—N3—C14—C15 | 74.6 (4) |
| N2—C1—C2—N1 | −6.3 (4) | N3—C14—C15—C19 | −133.0 (3) |
| O1—C1—C2—C3 | −4.7 (4) | N3—C14—C15—C16 | 49.6 (4) |
| N2—C1—C2—C3 | 175.0 (3) | C19—C15—C16—C17 | 0.5 (5) |
| N1—C2—C3—C4 | −2.2 (4) | C14—C15—C16—C17 | 178.0 (3) |
| C1—C2—C3—C4 | 176.3 (3) | C15—C16—C17—C18 | 0.0 (5) |
| C2—C3—C4—C5 | 1.0 (5) | C19—N5—C18—C17 | 0.2 (5) |
| C3—C4—C5—C6 | 0.4 (5) | C16—C17—C18—N5 | −0.3 (5) |
| C2—N1—C6—C5 | −0.3 (4) | C18—N5—C19—C15 | 0.3 (5) |
| C2—N1—C6—C7 | 179.1 (2) | C16—C15—C19—N5 | −0.6 (5) |
| C4—C5—C6—N1 | −0.8 (4) | C14—C15—C19—N5 | −178.2 (3) |
| H··· | ||||
| N3—H3 | 0.88 | 2.18 | 2.980 (3) | 151 |
| O3—H1···O2iii | 0.76 (3) | 1.94 (3) | 2.679 (3) | 163 (3) |
Selected bond lengths (Å)
| Co1—N6 | 2.074 (2) |
| Co1—O3 | 2.134 (2) |
| Co1—N4 | 2.162 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.88 | 2.18 | 2.980 (3) | 151 |
| O3—H1⋯O2ii | 0.76 (3) | 1.94 (3) | 2.679 (3) | 163 (3) |
Symmetry codes: (i) ; (ii) .