Literature DB >> 22719321

Bis{N(2),N(6)-bis-[(pyridin-3-yl)meth-yl]pyridine-2,6-dicarboxamide-κN}bis-(methanol-κO)bis-(thio-cyanato-κN)cobalt(II).

Guang-Rui Yang, Juan Ren, Guo-Ting Li.   

Abstract

In the title compound, [Co(NCS)(2)(C(19)H(17)N(5)O(2))(2)(CH(3)OH)(2)], the Co(II) atom lies on an inversion center and is coordinated by two isothio-cyanate N atoms, two O atoms of methanol mol-ecules and two pyridine N atoms in a slightly distorted octa-hedral environment. Inter-molecular O-H⋯O and N-H⋯N hydrogen bonds join the complex mol-ecules into layers parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22719321      PMCID: PMC3379100          DOI: 10.1107/S1600536812020326

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of pyridyl­carboxamides, see: Thompson (2002 ▶); Wu et al. (2008 ▶). For the architectures of complexes with pyridyl­carboxamide ligands and various metal ions, see: Uemura et al. (2002 ▶); Burchell et al. (2006 ▶).

Experimental

Crystal data

[Co(NCS)2(C19H17N5O2)2(CH4O)2] M = 933.93 Monoclinic, a = 9.6728 (19) Å b = 17.631 (4) Å c = 13.041 (3) Å β = 100.13 (3)° V = 2189.4 (8) Å3 Z = 2 Mo Kα radiation μ = 0.55 mm−1 T = 293 K 0.22 × 0.21 × 0.18 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.892, T max = 0.914 21676 measured reflections 3803 independent reflections 3435 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.101 S = 1.15 3803 reflections 291 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020326/yk2057sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020326/yk2057Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(NCS)2(C19H17N5O2)2(CH4O)2]F(000) = 970
Mr = 933.93Dx = 1.417 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4895 reflections
a = 9.6728 (19) Åθ = 2.1–30.8°
b = 17.631 (4) ŵ = 0.55 mm1
c = 13.041 (3) ÅT = 293 K
β = 100.13 (3)°Block, pink
V = 2189.4 (8) Å30.22 × 0.21 × 0.18 mm
Z = 2
Siemens SMART CCD diffractometer3803 independent reflections
Radiation source: fine-focus sealed tube3435 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
ω scanθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.892, Tmax = 0.914k = −20→20
21676 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0359P)2 + 0.829P] where P = (Fo2 + 2Fc2)/3
3803 reflections(Δ/σ)max < 0.001
291 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.50000.03328 (16)
S1−0.19041 (9)0.20444 (5)0.66597 (7)0.0607 (3)
O10.3791 (3)−0.10454 (13)0.85021 (19)0.0727 (7)
O20.0978 (2)0.10649 (12)1.22010 (16)0.0622 (6)
O3−0.0365 (2)0.08401 (12)0.38047 (17)0.0472 (5)
N10.2436 (2)0.02348 (12)1.01554 (16)0.0373 (5)
N20.3961 (2)0.02276 (14)0.86373 (18)0.0463 (6)
H2A0.36830.06350.89350.056*
N30.2057 (2)0.16022 (13)1.09943 (17)0.0443 (6)
H3A0.24680.15321.04510.053*
N40.2142 (2)0.03865 (13)0.54496 (17)0.0397 (5)
N50.3318 (3)0.30281 (16)1.4128 (2)0.0604 (7)
N6−0.0655 (3)0.07304 (14)0.60659 (18)0.0458 (6)
C10.3501 (3)−0.04486 (18)0.8894 (2)0.0471 (7)
C20.2582 (3)−0.04329 (16)0.9707 (2)0.0409 (7)
C30.1951 (3)−0.10950 (17)0.9980 (2)0.0533 (8)
H30.2049−0.15580.96280.064*
C40.1183 (3)−0.10634 (19)1.0772 (3)0.0583 (9)
H40.0753−0.15081.09830.070*
C50.1043 (3)−0.03805 (18)1.1255 (2)0.0497 (8)
H50.0521−0.03461.18060.060*
C60.1676 (3)0.02553 (15)1.0922 (2)0.0386 (7)
C70.1543 (3)0.10093 (17)1.1426 (2)0.0419 (7)
C80.4895 (3)0.0323 (2)0.7894 (2)0.0536 (8)
H8A0.5457−0.01450.78860.064*
H8B0.55540.07420.81340.064*
C90.4171 (3)0.04924 (16)0.6792 (2)0.0405 (7)
C100.2796 (3)0.02987 (16)0.6441 (2)0.0420 (7)
H100.22750.00900.69260.050*
C110.2886 (3)0.06854 (17)0.4779 (2)0.0509 (8)
H110.24530.07450.40710.061*
C120.4252 (4)0.0909 (2)0.5080 (3)0.0633 (9)
H120.47470.11320.45880.076*
C130.4904 (3)0.08126 (19)0.6091 (3)0.0566 (9)
H130.58530.09650.63060.068*
C140.1958 (4)0.23665 (17)1.1399 (2)0.0537 (8)
H14A0.09880.24521.15190.064*
H14B0.21450.27361.08670.064*
C150.2965 (3)0.25142 (15)1.2399 (2)0.0419 (7)
C160.4374 (4)0.23449 (18)1.2524 (3)0.0594 (9)
H160.47470.21111.19750.071*
C170.5232 (4)0.2516 (2)1.3443 (3)0.0665 (10)
H170.62070.24031.35410.080*
C180.4669 (4)0.28538 (19)1.4224 (3)0.0620 (9)
H180.52730.29681.48610.074*
C190.2503 (3)0.28563 (17)1.3221 (2)0.0522 (8)
H190.15330.29801.31390.063*
C20−0.1081 (5)0.1531 (2)0.3779 (3)0.0936 (15)
H20A−0.18990.14730.41220.140*
H20B−0.13940.16860.30530.140*
H20C−0.04530.19190.41430.140*
C21−0.1174 (3)0.12750 (16)0.6318 (2)0.0387 (6)
H10.005 (3)0.0815 (17)0.336 (2)0.045 (10)*
U11U22U33U12U13U23
Co10.0331 (3)0.0375 (3)0.0294 (3)0.0044 (2)0.0059 (2)0.0039 (2)
S10.0654 (6)0.0427 (5)0.0790 (6)0.0000 (4)0.0261 (5)−0.0131 (4)
O10.0898 (19)0.0547 (14)0.0772 (17)0.0137 (13)0.0244 (14)−0.0174 (13)
O20.0804 (17)0.0688 (15)0.0449 (13)0.0054 (12)0.0318 (12)0.0063 (11)
O30.0517 (13)0.0519 (13)0.0415 (12)0.0129 (10)0.0179 (11)0.0156 (10)
N10.0372 (13)0.0400 (13)0.0322 (12)0.0034 (10)−0.0006 (10)−0.0006 (10)
N20.0466 (15)0.0544 (16)0.0378 (13)0.0025 (12)0.0067 (11)−0.0090 (11)
N30.0574 (16)0.0449 (14)0.0341 (13)−0.0024 (12)0.0176 (12)−0.0015 (11)
N40.0358 (13)0.0479 (14)0.0352 (13)−0.0013 (11)0.0063 (10)0.0022 (11)
N50.0644 (19)0.0654 (18)0.0547 (17)−0.0038 (15)0.0195 (15)−0.0203 (14)
N60.0497 (15)0.0484 (15)0.0415 (14)0.0059 (12)0.0143 (12)−0.0012 (12)
C10.0476 (18)0.0490 (19)0.0406 (17)0.0103 (15)−0.0035 (14)−0.0062 (15)
C20.0404 (16)0.0441 (17)0.0344 (15)0.0043 (13)−0.0043 (12)0.0014 (13)
C30.056 (2)0.0406 (18)0.057 (2)0.0008 (15)−0.0057 (16)−0.0021 (15)
C40.060 (2)0.051 (2)0.062 (2)−0.0100 (16)0.0035 (17)0.0104 (17)
C50.0493 (18)0.057 (2)0.0419 (17)−0.0049 (15)0.0047 (14)0.0100 (15)
C60.0362 (15)0.0459 (17)0.0321 (15)0.0021 (13)0.0016 (12)0.0063 (12)
C70.0413 (16)0.0553 (19)0.0288 (15)0.0063 (14)0.0057 (13)0.0040 (13)
C80.0359 (17)0.077 (2)0.0457 (18)−0.0008 (16)0.0012 (14)−0.0087 (16)
C90.0336 (15)0.0451 (16)0.0421 (16)0.0006 (13)0.0049 (13)−0.0066 (13)
C100.0400 (16)0.0530 (18)0.0337 (15)−0.0002 (14)0.0082 (13)0.0005 (13)
C110.0484 (18)0.062 (2)0.0426 (18)−0.0015 (16)0.0094 (15)0.0125 (15)
C120.057 (2)0.080 (2)0.058 (2)−0.0173 (18)0.0216 (17)0.0120 (18)
C130.0409 (18)0.068 (2)0.061 (2)−0.0175 (16)0.0086 (16)−0.0059 (17)
C140.070 (2)0.0449 (18)0.0483 (18)0.0091 (16)0.0159 (16)−0.0003 (15)
C150.0495 (18)0.0343 (15)0.0444 (17)0.0026 (13)0.0153 (14)−0.0027 (13)
C160.063 (2)0.061 (2)0.060 (2)0.0124 (17)0.0266 (18)−0.0089 (17)
C170.053 (2)0.073 (2)0.075 (3)0.0072 (18)0.0156 (19)−0.009 (2)
C180.065 (2)0.057 (2)0.063 (2)−0.0105 (18)0.0105 (18)−0.0089 (18)
C190.0488 (18)0.0533 (19)0.059 (2)0.0015 (15)0.0220 (16)−0.0111 (16)
C200.148 (4)0.068 (2)0.072 (3)0.060 (3)0.040 (3)0.029 (2)
C210.0366 (16)0.0423 (16)0.0377 (16)−0.0074 (13)0.0080 (12)−0.0005 (13)
Co1—N6i2.074 (2)C4—H40.9500
Co1—N62.074 (2)C5—C61.384 (4)
Co1—O32.134 (2)C5—H50.9500
Co1—O3i2.134 (2)C6—C71.499 (4)
Co1—N4i2.162 (2)C8—C91.513 (4)
Co1—N42.162 (2)C8—H8A0.9900
S1—C211.627 (3)C8—H8B0.9900
O1—C11.224 (3)C9—C101.371 (4)
O2—C71.234 (3)C9—C131.373 (4)
O3—C201.399 (4)C10—H100.9500
O3—H10.76 (3)C11—C121.369 (4)
N1—C21.333 (3)C11—H110.9500
N1—C61.341 (3)C12—C131.369 (4)
N2—C11.336 (4)C12—H120.9500
N2—C81.447 (4)C13—H130.9500
N2—H2A0.8800C14—C151.507 (4)
N3—C71.325 (3)C14—H14A0.9900
N3—C141.456 (4)C14—H14B0.9900
N3—H3A0.8800C15—C191.372 (4)
N4—C111.334 (3)C15—C161.377 (4)
N4—C101.344 (3)C16—C171.366 (5)
N5—C181.327 (4)C16—H160.9500
N5—C191.335 (4)C17—C181.372 (5)
N6—C211.158 (3)C17—H170.9500
C1—C21.498 (4)C18—H180.9500
C2—C31.393 (4)C19—H190.9500
C3—C41.375 (4)C20—H20A0.9800
C3—H30.9500C20—H20B0.9800
C4—C51.377 (4)C20—H20C0.9800
N6i—Co1—N6180.00 (9)N3—C7—C6116.4 (2)
N6i—Co1—O388.41 (9)N2—C8—C9114.9 (2)
N6—Co1—O391.59 (9)N2—C8—H8A108.6
N6i—Co1—O3i91.59 (9)C9—C8—H8A108.6
N6—Co1—O3i88.41 (9)N2—C8—H8B108.6
O3—Co1—O3i180.0C9—C8—H8B108.6
N6i—Co1—N4i90.80 (9)H8A—C8—H8B107.5
N6—Co1—N4i89.20 (9)C10—C9—C13117.6 (3)
O3—Co1—N4i89.60 (9)C10—C9—C8121.8 (3)
O3i—Co1—N4i90.40 (9)C13—C9—C8120.4 (3)
N6i—Co1—N489.20 (9)N4—C10—C9123.9 (3)
N6—Co1—N490.80 (9)N4—C10—H10118.1
O3—Co1—N490.40 (9)C9—C10—H10118.1
O3i—Co1—N489.60 (9)N4—C11—C12122.0 (3)
N4i—Co1—N4180.0N4—C11—H11119.0
C20—O3—Co1129.8 (2)C12—C11—H11119.0
C20—O3—H1111 (2)C13—C12—C11119.9 (3)
Co1—O3—H1118 (2)C13—C12—H12120.1
C2—N1—C6117.7 (2)C11—C12—H12120.1
C1—N2—C8123.2 (3)C12—C13—C9119.2 (3)
C1—N2—H2A118.4C12—C13—H13120.4
C8—N2—H2A118.4C9—C13—H13120.4
C7—N3—C14121.5 (2)N3—C14—C15113.6 (2)
C7—N3—H3A119.2N3—C14—H14A108.9
C14—N3—H3A119.2C15—C14—H14A108.9
C11—N4—C10117.3 (2)N3—C14—H14B108.9
C11—N4—Co1123.2 (2)C15—C14—H14B108.9
C10—N4—Co1119.40 (18)H14A—C14—H14B107.7
C18—N5—C19116.7 (3)C19—C15—C16117.1 (3)
C21—N6—Co1154.7 (2)C19—C15—C14120.2 (3)
O1—C1—N2123.5 (3)C16—C15—C14122.7 (3)
O1—C1—C2121.3 (3)C17—C16—C15119.4 (3)
N2—C1—C2115.2 (3)C17—C16—H16120.3
N1—C2—C3122.9 (3)C15—C16—H16120.3
N1—C2—C1116.7 (3)C16—C17—C18119.2 (3)
C3—C2—C1120.5 (3)C16—C17—H17120.4
C4—C3—C2118.5 (3)C18—C17—H17120.4
C4—C3—H3120.7N5—C18—C17122.9 (3)
C2—C3—H3120.7N5—C18—H18118.5
C3—C4—C5119.3 (3)C17—C18—H18118.5
C3—C4—H4120.4N5—C19—C15124.6 (3)
C5—C4—H4120.4N5—C19—H19117.7
C4—C5—C6118.7 (3)C15—C19—H19117.7
C4—C5—H5120.7O3—C20—H20A109.5
C6—C5—H5120.7O3—C20—H20B109.5
N1—C6—C5122.9 (3)H20A—C20—H20B109.5
N1—C6—C7116.9 (2)O3—C20—H20C109.5
C5—C6—C7120.2 (3)H20A—C20—H20C109.5
O2—C7—N3122.6 (3)H20B—C20—H20C109.5
O2—C7—C6121.0 (3)N6—C21—S1179.4 (3)
N6i—Co1—O3—C20167.7 (3)C4—C5—C6—C7179.8 (3)
N6—Co1—O3—C20−12.3 (3)C14—N3—C7—O2−1.4 (4)
N4i—Co1—O3—C2076.9 (3)C14—N3—C7—C6178.5 (2)
N4—Co1—O3—C20−103.1 (3)N1—C6—C7—O2−173.0 (3)
N6i—Co1—N4—C1157.5 (2)C5—C6—C7—O26.5 (4)
N6—Co1—N4—C11−122.5 (2)N1—C6—C7—N37.2 (4)
O3—Co1—N4—C11−30.9 (2)C5—C6—C7—N3−173.4 (3)
O3i—Co1—N4—C11149.1 (2)C1—N2—C8—C994.9 (3)
N6i—Co1—N4—C10−119.7 (2)N2—C8—C9—C10−22.9 (4)
N6—Co1—N4—C1060.3 (2)N2—C8—C9—C13160.6 (3)
O3—Co1—N4—C10151.9 (2)C11—N4—C10—C9−0.5 (4)
O3i—Co1—N4—C10−28.1 (2)Co1—N4—C10—C9176.9 (2)
O3—Co1—N6—C2112.0 (5)C13—C9—C10—N41.7 (4)
O3i—Co1—N6—C21−168.0 (5)C8—C9—C10—N4−174.9 (3)
N4i—Co1—N6—C21−77.6 (5)C10—N4—C11—C12−1.2 (4)
N4—Co1—N6—C21102.4 (5)Co1—N4—C11—C12−178.4 (2)
C8—N2—C1—O1−2.3 (4)N4—C11—C12—C131.5 (5)
C8—N2—C1—C2177.9 (2)C11—C12—C13—C9−0.2 (5)
C6—N1—C2—C31.8 (4)C10—C9—C13—C12−1.4 (5)
C6—N1—C2—C1−176.7 (2)C8—C9—C13—C12175.3 (3)
O1—C1—C2—N1173.9 (3)C7—N3—C14—C1574.6 (4)
N2—C1—C2—N1−6.3 (4)N3—C14—C15—C19−133.0 (3)
O1—C1—C2—C3−4.7 (4)N3—C14—C15—C1649.6 (4)
N2—C1—C2—C3175.0 (3)C19—C15—C16—C170.5 (5)
N1—C2—C3—C4−2.2 (4)C14—C15—C16—C17178.0 (3)
C1—C2—C3—C4176.3 (3)C15—C16—C17—C180.0 (5)
C2—C3—C4—C51.0 (5)C19—N5—C18—C170.2 (5)
C3—C4—C5—C60.4 (5)C16—C17—C18—N5−0.3 (5)
C2—N1—C6—C5−0.3 (4)C18—N5—C19—C150.3 (5)
C2—N1—C6—C7179.1 (2)C16—C15—C19—N5−0.6 (5)
C4—C5—C6—N1−0.8 (4)C14—C15—C19—N5−178.2 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N5ii0.882.182.980 (3)151
O3—H1···O2iii0.76 (3)1.94 (3)2.679 (3)163 (3)
Table 1

Selected bond lengths (Å)

Co1—N62.074 (2)
Co1—O32.134 (2)
Co1—N42.162 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N5i0.882.182.980 (3)151
O3—H1⋯O2ii0.76 (3)1.94 (3)2.679 (3)163 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel flexible frameworks of porous cobalt(II) coordination polymers that show selective guest adsorption based on the switching of hydrogen-bond pairs of amide groups.

Authors:  Kazuhiro Uemura; Susumu Kitagawa; Mitsuru Kondo; Kôichi Fukui; Ryo Kitaura; Ho-Chol Chang; Tadashi Mizutani
Journal:  Chemistry       Date:  2002-08-16       Impact factor: 5.236

  2 in total

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