Literature DB >> 22719289

catena-Poly[[[bis-(acetato-κ(2)O,O')aqua-cadmium]-μ-[(pyridin-3-yl)(pyridin-4-yl)methanone]-κ(2)N:N'] dihydrate].

Zhi-Wei Wang1, Ai-Min Li, Ya Zhang.   

Abstract

In the title complex, {[Cd(CH(3)COO)(2)(C(11)H(8)N(2)O)(H(2)O)]·2H(2)O}(n), the Cd(II) ion adopts an O(5)N(2) penta-gonal-bipyramidal coordination geometry with four acetate O atoms and one water O atom at the equatorial sites and two pyridine N atoms at the axial sites. The (pyridin-3-yl)(pyridin-4-yl)methanone ligand acts in a μ(2)-bridging mode, linking the metal atoms, leading to an infinite chain along [-110]. O-H⋯O hydrogen bonds involving the lattice water mol-ecules connect these chains into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719289      PMCID: PMC3379068          DOI: 10.1107/S1600536812019101

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of pyridyl-based derivatives, see: Zhao et al. (2004 ▶); Wang et al. (2009 ▶). For background to di-2-pyridinyl­methanone see: Boudalis et al. (2003 ▶). For the transition metal complexes of the positional isomers of di-2-pyridinyl­methanone, see: Chen, Guo et al. (2005 ▶); Chen et al. (2009 ▶); Chen, Du & Mak (2005 ▶); Chen & Mak (2005 ▶); Famum et al. (2009 ▶).

Experimental

Crystal data

[Cd(C2H3O2)2(C11H8N2O)(H2O)]·2H2O M = 468.73 Triclinic, a = 8.545 (2) Å b = 10.699 (3) Å c = 11.215 (3) Å α = 76.903 (5)° β = 87.833 (5)° γ = 77.160 (5)° V = 973.5 (5) Å3 Z = 2 Mo Kα radiation μ = 1.16 mm−1 T = 293 K 0.38 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.840, T max = 1.000 6828 measured reflections 4747 independent reflections 4041 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.084 S = 1.05 4747 reflections 235 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812019101/bt5902sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019101/bt5902Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C2H3O2)2(C11H8N2O)(H2O)]·2H2OZ = 2
Mr = 468.73F(000) = 472
Triclinic, P1Dx = 1.599 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.545 (2) ÅCell parameters from 215 reflections
b = 10.699 (3) Åθ = 1.9–28.4°
c = 11.215 (3) ŵ = 1.16 mm1
α = 76.903 (5)°T = 293 K
β = 87.833 (5)°Block, colorless
γ = 77.160 (5)°0.38 × 0.20 × 0.18 mm
V = 973.5 (5) Å3
Bruker SMART APEXII CCD area-detector diffractometer4747 independent reflections
Radiation source: fine-focus sealed tube4041 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
ω scansθmax = 28.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −11→11
Tmin = 0.840, Tmax = 1.000k = −9→14
6828 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0412P)2] P = (Fo2 + 2Fc2)/3
4747 reflections(Δ/σ)max = 0.001
235 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.73166 (2)0.608007 (18)0.821278 (16)0.03377 (8)
N10.8989 (3)0.4149 (2)0.7726 (2)0.0405 (6)
N21.5508 (3)−0.2090 (2)0.8722 (2)0.0417 (6)
O11.1137 (3)0.0944 (3)1.0377 (2)0.0685 (8)
C10.9091 (4)0.4024 (4)0.6568 (3)0.0582 (10)
H1A0.84910.46890.59710.070*
C21.0037 (5)0.2965 (4)0.6219 (3)0.0688 (12)
H2A1.00970.29280.53980.083*
C31.0909 (4)0.1944 (3)0.7093 (3)0.0548 (9)
H3A1.15410.12050.68750.066*
C41.0812 (3)0.2054 (3)0.8303 (3)0.0391 (6)
C50.9845 (3)0.3188 (3)0.8561 (3)0.0384 (6)
H5A0.97980.32760.93690.046*
C61.1627 (4)0.0998 (3)0.9342 (3)0.0435 (7)
C71.4426 (4)−0.2286 (3)0.9592 (3)0.0463 (7)
H7A1.4505−0.31321.00670.056*
C81.3195 (4)−0.1299 (3)0.9822 (3)0.0448 (7)
H8A1.2480−0.14811.04500.054*
C91.3027 (3)−0.0036 (3)0.9114 (2)0.0380 (6)
C101.4176 (4)0.0188 (3)0.8233 (3)0.0462 (7)
H10A1.41370.10280.77570.055*
C111.5389 (4)−0.0866 (3)0.8074 (3)0.0464 (7)
H11A1.6157−0.07060.74830.056*
O50.9921 (3)0.6479 (2)0.85165 (19)0.0476 (5)
O20.5727 (3)0.6074 (2)0.64724 (19)0.0518 (6)
O30.5016 (3)0.5111 (2)0.82736 (19)0.0484 (5)
O40.8583 (3)0.7585 (2)0.68529 (19)0.0520 (5)
C140.9794 (4)0.7337 (3)0.7540 (3)0.0421 (7)
C151.1079 (5)0.8105 (4)0.7191 (4)0.0762 (12)
H15A1.19390.76070.68020.114*
H15B1.14810.82760.79120.114*
H15C1.06370.89240.66350.114*
C120.4849 (4)0.5416 (3)0.7123 (3)0.0453 (7)
C130.3582 (5)0.4955 (5)0.6545 (4)0.0817 (13)
H13A0.35830.52740.56730.122*
H13B0.25480.52870.68560.122*
H13C0.38070.40110.67370.122*
O3W0.7517 (3)0.5164 (3)1.02658 (19)0.0601 (7)
O1W0.7280 (4)0.9615 (3)0.4905 (3)0.0903 (10)
O2W0.4924 (4)0.8260 (3)0.4497 (3)0.0989 (11)
H2WA0.51920.75280.50800.148*
H2WB0.40680.88250.46820.148*
H1WB0.67740.90790.46500.148*
H3WA0.83720.46771.07090.148*
H3WB0.67510.50701.08180.148*
H1WA0.78170.93480.56150.148*
U11U22U33U12U13U23
Cd10.03121 (12)0.02824 (11)0.03400 (12)0.00510 (7)0.00321 (7)−0.00279 (8)
N10.0415 (13)0.0352 (13)0.0381 (12)0.0071 (10)−0.0005 (10)−0.0097 (10)
N20.0393 (13)0.0308 (12)0.0453 (13)0.0059 (10)0.0064 (10)−0.0027 (10)
O10.0837 (19)0.0541 (15)0.0451 (12)0.0237 (13)0.0146 (12)−0.0053 (11)
C10.062 (2)0.054 (2)0.0431 (17)0.0222 (17)−0.0081 (15)−0.0130 (15)
C20.079 (3)0.073 (3)0.0398 (17)0.029 (2)−0.0093 (16)−0.0260 (17)
C30.058 (2)0.0506 (19)0.0475 (17)0.0171 (16)−0.0052 (15)−0.0219 (15)
C40.0375 (15)0.0319 (14)0.0416 (15)0.0074 (11)−0.0004 (11)−0.0103 (12)
C50.0388 (15)0.0332 (15)0.0380 (14)0.0055 (12)0.0028 (11)−0.0109 (12)
C60.0488 (17)0.0332 (15)0.0428 (15)0.0041 (13)0.0027 (13)−0.0103 (12)
C70.0456 (17)0.0302 (15)0.0507 (17)0.0053 (12)0.0112 (13)0.0012 (13)
C80.0457 (17)0.0333 (15)0.0453 (16)0.0015 (13)0.0140 (13)−0.0002 (13)
C90.0393 (15)0.0320 (14)0.0362 (14)0.0058 (11)0.0024 (11)−0.0075 (11)
C100.0501 (18)0.0297 (15)0.0476 (16)0.0032 (13)0.0068 (13)0.0012 (13)
C110.0425 (17)0.0376 (16)0.0496 (17)0.0018 (13)0.0105 (13)−0.0022 (13)
O50.0453 (12)0.0503 (13)0.0417 (11)−0.0059 (10)−0.0038 (9)−0.0024 (10)
O20.0492 (13)0.0550 (14)0.0410 (11)−0.0053 (11)0.0027 (9)0.0038 (10)
O30.0477 (12)0.0551 (14)0.0379 (11)−0.0097 (10)0.0043 (9)−0.0030 (10)
O40.0488 (13)0.0518 (13)0.0474 (12)−0.0076 (10)−0.0047 (10)0.0027 (10)
C140.0388 (16)0.0416 (16)0.0456 (16)−0.0042 (13)0.0069 (12)−0.0149 (14)
C150.071 (3)0.080 (3)0.085 (3)−0.039 (2)0.014 (2)−0.015 (2)
C120.0355 (15)0.0491 (18)0.0477 (17)0.0001 (13)0.0037 (13)−0.0129 (14)
C130.069 (3)0.124 (4)0.070 (3)−0.035 (3)0.007 (2)−0.046 (3)
O3W0.0433 (12)0.0789 (18)0.0368 (11)0.0075 (12)0.0039 (9)0.0095 (11)
O1W0.110 (3)0.079 (2)0.0571 (16)0.0117 (18)0.0076 (16)0.0015 (15)
O2W0.129 (3)0.067 (2)0.0707 (19)0.0134 (19)0.0083 (18)0.0106 (16)
Cd1—O3W2.286 (2)C7—H7A0.9300
Cd1—O42.372 (2)C8—C91.383 (4)
Cd1—N2i2.375 (2)C8—H8A0.9300
Cd1—N12.398 (2)C9—C101.386 (4)
Cd1—O52.408 (2)C10—C111.391 (4)
Cd1—O32.410 (2)C10—H10A0.9300
Cd1—O22.422 (2)C11—H11A0.9300
Cd1—C142.747 (3)O5—C141.250 (4)
N1—C51.323 (3)O2—C121.245 (4)
N1—C11.333 (4)O3—C121.262 (4)
N2—C111.330 (4)O4—C141.257 (4)
N2—C71.332 (4)C14—C151.502 (5)
N2—Cd1ii2.375 (2)C15—H15A0.9600
O1—C61.213 (4)C15—H15B0.9600
C1—C21.364 (5)C15—H15C0.9600
C1—H1A0.9300C12—C131.507 (5)
C2—C31.384 (4)C13—H13A0.9600
C2—H2A0.9300C13—H13B0.9600
C3—C41.386 (4)C13—H13C0.9600
C3—H3A0.9300O3W—H3WA0.8900
C4—C51.391 (4)O3W—H3WB0.8900
C4—C61.494 (4)O1W—H1WB0.8902
C5—H5A0.9300O1W—H1WA0.8899
C6—C91.496 (4)O2W—H2WA0.8900
C7—C81.378 (4)O2W—H2WB0.8900
O3W—Cd1—O4134.73 (9)O1—C6—C4120.6 (3)
O3W—Cd1—N2i86.76 (9)O1—C6—C9118.9 (3)
O4—Cd1—N2i88.26 (9)C4—C6—C9120.5 (2)
O3W—Cd1—N192.22 (8)N2—C7—C8123.3 (3)
O4—Cd1—N195.29 (9)N2—C7—H7A118.3
N2i—Cd1—N1175.86 (9)C8—C7—H7A118.3
O3W—Cd1—O583.51 (8)C7—C8—C9119.7 (3)
O4—Cd1—O554.23 (7)C7—C8—H8A120.2
N2i—Cd1—O5103.67 (9)C9—C8—H8A120.2
N1—Cd1—O580.18 (9)C8—C9—C10117.5 (3)
O3W—Cd1—O384.81 (8)C8—C9—C6118.4 (3)
O4—Cd1—O3139.62 (7)C10—C9—C6124.2 (3)
N2i—Cd1—O386.02 (9)C9—C10—C11118.9 (3)
N1—Cd1—O389.90 (9)C9—C10—H10A120.6
O5—Cd1—O3164.34 (7)C11—C10—H10A120.6
O3W—Cd1—O2138.18 (9)N2—C11—C10123.5 (3)
O4—Cd1—O287.04 (8)N2—C11—H11A118.3
N2i—Cd1—O293.99 (9)C10—C11—H11A118.3
N1—Cd1—O284.09 (8)C14—O5—Cd191.75 (18)
O5—Cd1—O2136.00 (7)C12—O2—Cd192.67 (19)
O3—Cd1—O253.64 (7)C12—O3—Cd192.80 (19)
O3W—Cd1—C14109.10 (9)C14—O4—Cd193.23 (18)
O4—Cd1—C1427.19 (8)O5—C14—O4120.7 (3)
N2i—Cd1—C1496.00 (9)O5—C14—C15120.0 (3)
N1—Cd1—C1488.13 (9)O4—C14—C15119.3 (3)
O5—Cd1—C1427.06 (8)O5—C14—Cd161.19 (16)
O3—Cd1—C14166.01 (8)O4—C14—Cd159.58 (16)
O2—Cd1—C14112.38 (8)C15—C14—Cd1176.2 (2)
C5—N1—C1117.5 (2)C14—C15—H15A109.5
C5—N1—Cd1122.83 (18)C14—C15—H15B109.5
C1—N1—Cd1119.61 (19)H15A—C15—H15B109.5
C11—N2—C7117.1 (2)C14—C15—H15C109.5
C11—N2—Cd1ii122.53 (19)H15A—C15—H15C109.5
C7—N2—Cd1ii119.83 (19)H15B—C15—H15C109.5
N1—C1—C2122.9 (3)O2—C12—O3120.8 (3)
N1—C1—H1A118.5O2—C12—C13120.3 (3)
C2—C1—H1A118.5O3—C12—C13118.9 (3)
C1—C2—C3119.8 (3)C12—C13—H13A109.5
C1—C2—H2A120.1C12—C13—H13B109.5
C3—C2—H2A120.1H13A—C13—H13B109.5
C2—C3—C4118.1 (3)C12—C13—H13C109.5
C2—C3—H3A120.9H13A—C13—H13C109.5
C4—C3—H3A120.9H13B—C13—H13C109.5
C3—C4—C5117.8 (3)Cd1—O3W—H3WA129.2
C3—C4—C6123.5 (3)Cd1—O3W—H3WB130.0
C5—C4—C6118.6 (2)H3WA—O3W—H3WB100.0
N1—C5—C4123.9 (3)H1WB—O1W—H1WA120.0
N1—C5—H5A118.1H2WA—O2W—H2WB113.1
C4—C5—H5A118.1
O3W—Cd1—N1—C5−12.4 (3)O3W—Cd1—O2—C125.4 (2)
O4—Cd1—N1—C5122.9 (3)O4—Cd1—O2—C12−172.26 (19)
N2i—Cd1—N1—C5−88.0 (11)N2i—Cd1—O2—C12−84.20 (19)
O5—Cd1—N1—C570.6 (2)N1—Cd1—O2—C1292.11 (19)
O3—Cd1—N1—C5−97.2 (3)O5—Cd1—O2—C12161.38 (17)
O2—Cd1—N1—C5−150.6 (3)O3—Cd1—O2—C12−2.13 (17)
C14—Cd1—N1—C596.7 (3)C14—Cd1—O2—C12177.63 (18)
O3W—Cd1—N1—C1168.4 (3)O3W—Cd1—O3—C12−172.87 (19)
O4—Cd1—N1—C1−56.3 (3)O4—Cd1—O3—C1217.4 (2)
N2i—Cd1—N1—C192.7 (11)N2i—Cd1—O3—C12100.03 (19)
O5—Cd1—N1—C1−108.6 (3)N1—Cd1—O3—C12−80.64 (19)
O3—Cd1—N1—C183.6 (3)O5—Cd1—O3—C12−131.0 (3)
O2—Cd1—N1—C130.1 (3)O2—Cd1—O3—C122.10 (17)
C14—Cd1—N1—C1−82.6 (3)C14—Cd1—O3—C121.2 (4)
C5—N1—C1—C2−0.4 (6)O3W—Cd1—O4—C1423.0 (2)
Cd1—N1—C1—C2178.9 (4)N2i—Cd1—O4—C14106.73 (19)
N1—C1—C2—C31.8 (7)N1—Cd1—O4—C14−75.40 (19)
C1—C2—C3—C4−1.5 (7)O5—Cd1—O4—C14−1.53 (16)
C2—C3—C4—C5−0.1 (6)O3—Cd1—O4—C14−171.49 (16)
C2—C3—C4—C6177.0 (4)O2—Cd1—O4—C14−159.18 (19)
C1—N1—C5—C4−1.3 (5)Cd1—O5—C14—O4−2.7 (3)
Cd1—N1—C5—C4179.4 (2)Cd1—O5—C14—C15175.8 (3)
C3—C4—C5—N11.6 (5)Cd1—O4—C14—O52.8 (3)
C6—C4—C5—N1−175.7 (3)Cd1—O4—C14—C15−175.8 (3)
C3—C4—C6—O1−156.8 (4)O3W—Cd1—C14—O519.8 (2)
C5—C4—C6—O120.3 (5)O4—Cd1—C14—O5−177.3 (3)
C3—C4—C6—C921.1 (5)N2i—Cd1—C14—O5108.46 (18)
C5—C4—C6—C9−161.8 (3)N1—Cd1—C14—O5−71.88 (18)
C11—N2—C7—C81.5 (5)O3—Cd1—C14—O5−153.9 (3)
Cd1ii—N2—C7—C8−170.5 (3)O2—Cd1—C14—O5−154.70 (17)
N2—C7—C8—C91.3 (5)O3W—Cd1—C14—O4−162.90 (17)
C7—C8—C9—C10−3.2 (5)N2i—Cd1—C14—O4−74.26 (19)
C7—C8—C9—C6176.7 (3)N1—Cd1—C14—O4105.40 (19)
O1—C6—C9—C833.5 (5)O5—Cd1—C14—O4177.3 (3)
C4—C6—C9—C8−144.4 (3)O3—Cd1—C14—O423.4 (4)
O1—C6—C9—C10−146.6 (4)O2—Cd1—C14—O422.6 (2)
C4—C6—C9—C1035.5 (5)O3W—Cd1—C14—C15−89 (4)
C8—C9—C10—C112.5 (5)O4—Cd1—C14—C1574 (4)
C6—C9—C10—C11−177.4 (3)N2i—Cd1—C14—C15−1 (4)
C7—N2—C11—C10−2.2 (5)N1—Cd1—C14—C15179 (100)
Cd1ii—N2—C11—C10169.5 (3)O5—Cd1—C14—C15−109 (4)
C9—C10—C11—N20.3 (5)O3—Cd1—C14—C1597 (4)
O3W—Cd1—O5—C14−161.18 (19)O2—Cd1—C14—C1596 (4)
O4—Cd1—O5—C141.54 (17)Cd1—O2—C12—O33.8 (3)
N2i—Cd1—O5—C14−76.13 (19)Cd1—O2—C12—C13−175.3 (3)
N1—Cd1—O5—C14105.42 (18)Cd1—O3—C12—O2−3.8 (3)
O3—Cd1—O5—C14156.8 (2)Cd1—O3—C12—C13175.3 (3)
O2—Cd1—O5—C1434.7 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O40.892.062.773 (2)136
O1W—H1WB···O2w0.892.002.834 (3)155
O2W—H2WA···O20.891.932.811 (4)173
O2W—H2WB···O1wiii0.891.952.803 (2)162
O3W—H3WA···O5iv0.891.802.679 (2)172
O3W—H3WB···O3v0.891.812.693 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O40.892.062.773 (2)136
O1W—H1WB⋯O2w0.892.002.834 (3)155
O2W—H2WA⋯O20.891.932.811 (4)173
O2W—H2WB⋯O1wi0.891.952.803 (2)162
O3W—H3WA⋯O5ii0.891.802.679 (2)172
O3W—H3WB⋯O3iii0.891.812.693 (3)170

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Control of channel size for selective guest inclusion with inlaid anionic building blocks in a porous cationic metal-organic host framework.

Authors:  Xu-Dong Chen; Chong-Qing Wan; Herman H-Y Sung; Ian D Williams; Thomas C W Mak
Journal:  Chemistry       Date:  2009-06-22       Impact factor: 5.236

3.  Design and synthesis of 3d-4f metal-based zeolite-type materials with a 3D nanotubular structure encapsulated "water" pipe.

Authors:  Bin Zhao; Peng Cheng; Xiaoyan Chen; Cai Cheng; Wei Shi; Daizheng Liao; Shiping Yan; Zonghui Jiang
Journal:  J Am Chem Soc       Date:  2004-03-17       Impact factor: 15.419

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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