Literature DB >> 22718933

Assessment of whole-genome mapping in a well-defined outbreak of Salmonella enterica serotype Saintpaul.

P D Fey1, P C Iwen, E B Zentz, A M Briska, J K Henkhaus, K A Bryant, M A Larson, R K Noel, S H Hinrichs.   

Abstract

We investigated the use of whole-genome mapping and pulsed-field gel electrophoresis (PFGE) with isolates from an outbreak of Salmonella enterica serotype Saintpaul. PFGE and whole-genome mapping were concordant with 22 of 23 isolates. Whole-genome mapping is a viable alternative tool for the epidemiological analysis of Salmonella food-borne disease investigations.

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Year:  2012        PMID： 22718933      PMCID： PMC3421809          DOI： 10.1128/JCM.01320-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  15 in total

1.  Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Authors:  Susan Reslewic; Shiguo Zhou; Mike Place; Yaoping Zhang; Adam Briska; Steve Goldstein; Chris Churas; Rod Runnheim; Dan Forrest; Alex Lim; Alla Lapidus; Cliff S Han; Gary P Roberts; David C Schwartz
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

2.  Simultaneous analysis of multiple enzymes increases accuracy of pulsed-field gel electrophoresis in assigning genetic relationships among homogeneous Salmonella strains.

Authors:  Jie Zheng; Christine E Keys; Shaohua Zhao; Rafiq Ahmed; Jianghong Meng; Eric W Brown
Journal:  J Clin Microbiol       Date:  2010-10-27       Impact factor: 5.948

3.  Shotgun optical maps of the whole Escherichia coli O157:H7 genome.

Authors:  A Lim; E T Dimalanta; K D Potamousis; G Yen; J Apodoca; C Tao; J Lin; R Qi; J Skiadas; A Ramanathan; N T Perna; G Plunkett; V Burland; B Mau; J Hackett; F R Blattner; T S Anantharaman; B Mishra; D C Schwartz
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

4.  Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet.

Authors:  Efrain M Ribot; M A Fair; R Gautom; D N Cameron; S B Hunter; B Swaminathan; Timothy J Barrett
Journal:  Foodborne Pathog Dis       Date:  2006       Impact factor: 3.171

5.  Single-molecule approach to bacterial genomic comparisons via optical mapping.

Authors:  Shiguo Zhou; Andrew Kile; Michael Bechner; Michael Place; Erika Kvikstad; Wen Deng; Jun Wei; Jessica Severin; Rodney Runnheim; Christopher Churas; Daniel Forrest; Eileen T Dimalanta; Casey Lamers; Valerie Burland; Frederick R Blattner; David C Schwartz
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

6.  Outbreak of Salmonella serotype Saintpaul infections associated with eating alfalfa sprouts - United States, 2009.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2009-05-15       Impact factor: 17.586

7.  Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4.

Authors:  Ufuk Nalbantoglu; Khalid Sayood; Michael P Dempsey; Peter C Iwen; Stephen C Francesconi; Ravi D Barabote; Gary Xie; Thomas S Brettin; Steven H Hinrichs; Paul D Fey
Journal:  PLoS One       Date:  2010-02-03       Impact factor: 3.240

8.  Optical maps distinguish individual strains of Escherichia coli O157 : H7.

Authors:  Michael L Kotewicz; Scott A Jackson; J Eugene LeClerc; Thomas A Cebula
Journal:  Microbiology (Reading)       Date:  2007-06       Impact factor: 2.777

9.  Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.

Authors:  Shiguo Zhou; Erika Kvikstad; Andrew Kile; Jessica Severin; Dan Forrest; Rod Runnheim; Chris Churas; Jason W Hickman; Chris Mackenzie; Madhusudan Choudhary; Timothy Donohue; Samuel Kaplan; David C Schwartz
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

10.  Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups.

Authors:  William R Schwan; Adam Briska; Buffy Stahl; Trevor K Wagner; Emily Zentz; John Henkhaus; Steven D Lovrich; William A Agger; Steven M Callister; Brian DuChateau; Colin W Dykes
Journal:  Microbiology (Reading)       Date:  2010-04-08       Impact factor: 2.777
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  5 in total

Review 1.  Analysis of single nucleic acid molecules in micro- and nano-fluidics.

Authors:  Sarah M Friedrich; Helena C Zec; Tza-Huei Wang
Journal:  Lab Chip       Date:  2016-03-07       Impact factor: 6.799

2.  Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

Authors:  Ruth E Timme; James B Pettengill; Marc W Allard; Errol Strain; Rodolphe Barrangou; Chris Wehnes; Joann S Van Kessel; Jeffrey S Karns; Steven M Musser; Eric W Brown
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

3.  An outbreak of Salmonella Saintpaul in a Scottish childcare facility: the influence of parental under-reporting.

Authors:  Rachel M Thomson; Hazel J Henderson; Alison Smith-Palmer
Journal:  BMC Infect Dis       Date:  2019-10-15       Impact factor: 3.090

4.  Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping.

Authors:  Fatma Onmus-Leone; Jun Hang; Robert J Clifford; Yu Yang; Matthew C Riley; Robert A Kuschner; Paige E Waterman; Emil P Lesho
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

5.  Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity.

Authors:  A R Last; H Pickering; C H Roberts; F Coll; J Phelan; S E Burr; E Cassama; M Nabicassa; H M B Seth-Smith; J Hadfield; L T Cutcliffe; I N Clarke; D C W Mabey; R L Bailey; T G Clark; N R Thomson; M J Holland
Journal:  Genome Med       Date:  2018-02-26       Impact factor: 11.117
  5 in total

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