Literature DB >> 22717884

Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.

Sebastian Thole1, Daniela Kalhoefer, Sonja Voget, Martine Berger, Tim Engelhardt, Heiko Liesegang, Antje Wollherr, Staffan Kjelleberg, Rolf Daniel, Meinhard Simon, Torsten Thomas, Thorsten Brinkhoff.   

Abstract

Phaeobacter gallaeciensis, a member of the abundant marine Roseobacter clade, is known to be an effective colonizer of biotic and abiotic marine surfaces. Production of the antibiotic tropodithietic acid (TDA) makes P. gallaeciensis a strong antagonist of many bacteria, including fish and mollusc pathogens. In addition to TDA, several other secondary metabolites are produced, allowing the mutualistic bacterium to also act as an opportunistic pathogen. Here we provide the manually annotated genome sequences of the P. gallaeciensis strains DSM 17395 and 2.10, isolated at the Atlantic coast of north western Spain and near Sydney, Australia, respectively. Despite their isolation sites from the two different hemispheres, the genome comparison demonstrated a surprisingly high level of synteny (only 3% nucleotide dissimilarity and 88% and 93% shared genes). Minor differences in the genomes result from horizontal gene transfer and phage infection. Comparison of the P. gallaeciensis genomes with those of other roseobacters revealed unique genomic traits, including the production of iron-scavenging siderophores. Experiments supported the predicted capacity of both strains to grow on various algal osmolytes. Transposon mutagenesis was used to expand the current knowledge on the TDA biosynthesis pathway in strain DSM 17395. This first comparative genomic analysis of finished genomes of two closely related strains belonging to one species of the Roseobacter clade revealed features that provide competitive advantages and facilitate surface attachment and interaction with eukaryotic hosts.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22717884      PMCID: PMC3504968          DOI: 10.1038/ismej.2012.62

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  83 in total

1.  The flavoprotein MrsD catalyzes the oxidative decarboxylation reaction involved in formation of the peptidoglycan biosynthesis inhibitor mersacidin.

Authors:  Florian Majer; Dietmar G Schmid; Karsten Altena; Gabriele Bierbaum; Thomas Kupke
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

2.  Nucleotide sequence and genetic organization of the ferric enterobactin transport system: homology to other periplasmic binding protein-dependent systems in Escherichia coli.

Authors:  C M Shea; M A McIntosh
Journal:  Mol Microbiol       Date:  1991-06       Impact factor: 3.501

3.  Phylogenetic characterization and in situ detection of bacterial communities associated with seahorses (Hippocampus guttulatus) in captivity.

Authors:  José L Balcázar; Natuschka M Lee; José Pintado; Miquel Planas
Journal:  Syst Appl Microbiol       Date:  2010-01-25       Impact factor: 4.022

4.  Universal chemical assay for the detection and determination of siderophores.

Authors:  B Schwyn; J B Neilands
Journal:  Anal Biochem       Date:  1987-01       Impact factor: 3.365

Review 5.  A role for bacteriophages in the evolution and transfer of bacterial virulence determinants.

Authors:  B F Cheetham; M E Katz
Journal:  Mol Microbiol       Date:  1995-10       Impact factor: 3.501

6.  Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Authors:  A C R da Silva; J A Ferro; F C Reinach; C S Farah; L R Furlan; R B Quaggio; C B Monteiro-Vitorello; M A Van Sluys; N F Almeida; L M C Alves; A M do Amaral; M C Bertolini; L E A Camargo; G Camarotte; F Cannavan; J Cardozo; F Chambergo; L P Ciapina; R M B Cicarelli; L L Coutinho; J R Cursino-Santos; H El-Dorry; J B Faria; A J S Ferreira; R C C Ferreira; M I T Ferro; E F Formighieri; M C Franco; C C Greggio; A Gruber; A M Katsuyama; L T Kishi; R P Leite; E G M Lemos; M V F Lemos; E C Locali; M A Machado; A M B N Madeira; N M Martinez-Rossi; E C Martins; J Meidanis; C F M Menck; C Y Miyaki; D H Moon; L M Moreira; M T M Novo; V K Okura; M C Oliveira; V R Oliveira; H A Pereira; A Rossi; J A D Sena; C Silva; R F de Souza; L A F Spinola; M A Takita; R E Tamura; E C Teixeira; R I D Tezza; M Trindade dos Santos; D Truffi; S M Tsai; F F White; J C Setubal; J P Kitajima
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

7.  Growth phase-dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 17395, a member of the marine Roseobacter-clade.

Authors:  Hajo Zech; Sebastian Thole; Kerstin Schreiber; Daniela Kalhöfer; Sonja Voget; Thorsten Brinkhoff; Meinhard Simon; Dietmar Schomburg; Ralf Rabus
Journal:  Proteomics       Date:  2009-07       Impact factor: 3.984

8.  Antibacterial activity of marine culturable bacteria collected from a global sampling of ocean surface waters and surface swabs of marine organisms.

Authors:  Lone Gram; Jette Melchiorsen; Jesper Bartholin Bruhn
Journal:  Mar Biotechnol (NY)       Date:  2009-10-13       Impact factor: 3.619

9.  Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters.

Authors:  Haifeng Geng; Jesper Bartholin Bruhn; Kristian F Nielsen; Lone Gram; Robert Belas
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

10.  Characterization and analysis of early enzymes for petrobactin biosynthesis in Bacillus anthracis.

Authors:  Brian F Pfleger; Jung Yeop Lee; Ravindranadh V Somu; Courtney C Aldrich; Philip C Hanna; David H Sherman
Journal:  Biochemistry       Date:  2007-03-09       Impact factor: 3.162

View more
  68 in total

Review 1.  Microbial Surface Colonization and Biofilm Development in Marine Environments.

Authors:  Hongyue Dang; Charles R Lovell
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-23       Impact factor: 11.056

2.  Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.

Authors:  Katharina Wiegmann; Michael Hensler; Lars Wöhlbrand; Marcus Ulbrich; Dietmar Schomburg; Ralf Rabus
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

Review 3.  Evolutionary ecology of the marine Roseobacter clade.

Authors:  Haiwei Luo; Mary Ann Moran
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

4.  Influence of Iron on Production of the Antibacterial Compound Tropodithietic Acid and Its Noninhibitory Analog in Phaeobacter inhibens.

Authors:  Paul W D'Alvise; Christopher B W Phippen; Kristian F Nielsen; Lone Gram
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

5.  Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Authors:  Paul G Beyersmann; Olga Chertkov; Jörn Petersen; Anne Fiebig; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-07-30

6.  Diversity and transport of microorganisms in intertidal sands of the California coast.

Authors:  Alexandria B Boehm; Kevan M Yamahara; Lauren M Sassoubre
Journal:  Appl Environ Microbiol       Date:  2014-04-18       Impact factor: 4.792

Review 7.  Quorum Sensing and Quorum Quenching in the Phycosphere of Phytoplankton: a Case of Chemical Interactions in Ecology.

Authors:  Jean Luc Rolland; Didier Stien; Sophie Sanchez-Ferandin; Raphaël Lami
Journal:  J Chem Ecol       Date:  2016-11-07       Impact factor: 2.626

8.  Non-Redfield, nutrient synergy and flexible internal elemental stoichiometry in a marine bacterium.

Authors:  Kathleen Trautwein; Christoph Feenders; Reiner Hulsch; Hanna S Ruppersberg; Annemieke Strijkstra; Mirjam Kant; Jannes Vagts; Daniel Wünsch; Bernhard Michalke; Michael Maczka; Stefan Schulz; Helmut Hillebrand; Bernd Blasius; Ralf Rabus
Journal:  FEMS Microbiol Ecol       Date:  2017-05-01       Impact factor: 4.194

9.  Amino Acid and Sugar Catabolism in the Marine Bacterium Phaeobacter inhibens DSM 17395 from an Energetic Viewpoint.

Authors:  Daniel Wünsch; Kathleen Trautwein; Sabine Scheve; Christina Hinrichs; Christoph Feenders; Bernd Blasius; Dietmar Schomburg; Ralf Rabus
Journal:  Appl Environ Microbiol       Date:  2019-11-27       Impact factor: 4.792

Review 10.  Evolution of resistance to quorum-sensing inhibitors.

Authors:  Vipin C Kalia; Thomas K Wood; Prasun Kumar
Journal:  Microb Ecol       Date:  2013-11-06       Impact factor: 4.552

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.