Literature DB >> 22715996

Standardisation of methods in soil microbiology: progress and challenges.

Laurent Philippot1, Karl Ritz, Pascal Pandard, Sara Hallin, Fabrice Martin-Laurent.   

Abstract

A plethora of methods have been developed over the few last decades to enable a better understanding of the ecology of soil microbial communities and their roles in soil functioning. However, there is generally considerable variation (both subtle and more extensive) in the actual realisation of these methods, and limited efforts have been devoted to their standardisation, despite this being crucial to underpin data comparison and integration. Ensuring comparable data across studies through standardisation is arguably best-practice, as well as necessary to effectively meet the objectives of various schemas, which require assessment of the consequences of the global change and intensification of human activities on the functioning of the soil ecosystem and its biological diversity. This article presents an overview of the existing and forthcoming ISO standards in soil microbiology and highlights possible future research efforts to be undertaken for developing new standards. We also discuss some practical and theoretical bottlenecks and hurdles that have limited standardisation in soil microbiology up to now.
© 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

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Year:  2012        PMID: 22715996     DOI: 10.1111/j.1574-6941.2012.01436.x

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

1.  ECOFUN-MICROBIODIV: an FP7 European project for developing and evaluating innovative tools for assessing the impact of pesticides on soil functional microbial diversity--towards new pesticide registration regulation?

Authors:  Fabrice Martin-Laurent; Ellen Kandeler; Ines Petric; Simonida Djuric; Dimitrios G Karpouzas
Journal:  Environ Sci Pollut Res Int       Date:  2012-12-08       Impact factor: 4.223

2.  "LOVE TO HATE" pesticides: felicity or curse for the soil microbial community? An FP7 IAPP Marie Curie project aiming to establish tools for the assessment of the mechanisms controlling the interactions of pesticides with soil microorganisms.

Authors:  D G Karpouzas; G Tsiamis; M Trevisan; F Ferrari; C Malandain; O Sibourg; F Martin-Laurent
Journal:  Environ Sci Pollut Res Int       Date:  2016-07-28       Impact factor: 4.223

3.  Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed.

Authors:  Pia K Wüst; Heiko Nacke; Kristin Kaiser; Sven Marhan; Johannes Sikorski; Ellen Kandeler; Rolf Daniel; Jörg Overmann
Journal:  Appl Environ Microbiol       Date:  2016-04-18       Impact factor: 4.792

4.  Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods.

Authors:  Paula Arribas; Carmelo Andújar; Kristine Bohmann; Jeremy R deWaard; Evan P Economo; Vasco Elbrecht; Stefan Geisen; Marta Goberna; Henrik Krehenwinkel; Vojtech Novotny; Lucie Zinger; Thomas J Creedy; Emmanouil Meramveliotakis; Víctor Noguerales; Isaac Overcast; Hélène Morlon; Anna Papadopoulou; Alfried P Vogler; Brent C Emerson
Journal:  Gigascience       Date:  2022-07-19       Impact factor: 7.658

5.  Land Spreading of Wastewaters from the Fruit-Packaging Industry and Potential Effects on Soil Microbes: Effects of the Antioxidant Ethoxyquin and Its Metabolites on Ammonia Oxidizers.

Authors:  Evangelia S Papadopoulou; Bella Tsachidou; Sławomir Sułowicz; Urania Menkissoglu-Spiroudi; Dimitrios G Karpouzas
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

6.  Profiling soil microbial communities with next-generation sequencing: the influence of DNA kit selection and technician technical expertise.

Authors:  Taha Soliman; Sung-Yin Yang; Tomoko Yamazaki; Holger Jenke-Kodama
Journal:  PeerJ       Date:  2017-12-19       Impact factor: 2.984

7.  Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD).

Authors:  Anja Narr; Ali Nawaz; Lukas Y Wick; Hauke Harms; Antonis Chatzinotas
Journal:  Front Microbiol       Date:  2017-10-10       Impact factor: 5.640

8.  Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities.

Authors:  Andrea Cavalieri; Frederik Bak; Adriana M Garcia-Lemos; Jacob Weiner; Mette Haubjerg Nicolaisen; Ole Nybroe
Journal:  Front Microbiol       Date:  2020-05-26       Impact factor: 5.640

9.  Rhizosphere bacterial carbon turnover is higher in nucleic acids than membrane lipids: implications for understanding soil carbon cycling.

Authors:  Ashish A Malik; Helena Dannert; Robert I Griffiths; Bruce C Thomson; Gerd Gleixner
Journal:  Front Microbiol       Date:  2015-04-09       Impact factor: 5.640

10.  Ecotoxicological Impact of the Bioherbicide Leptospermone on the Microbial Community of Two Arable Soils.

Authors:  Sana Romdhane; Marion Devers-Lamrani; Lise Barthelmebs; Christophe Calvayrac; Cédric Bertrand; Jean-François Cooper; Franck E Dayan; Fabrice Martin-Laurent
Journal:  Front Microbiol       Date:  2016-05-24       Impact factor: 5.640

  10 in total

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