Literature DB >> 22714546

Estimation and inference on correlations between biomarkers with repeated measures and left-censoring due to minimum detection levels.

Xianhong Xie1, Xiaonan Xue, Stephen J Gange, Howard D Strickler, Mimi Y Kim.   

Abstract

Statistical approaches for estimating and drawing inference on the correlation between two biomarkers that are repeatedly assessed over time and subject to left-censoring because minimum detection levels are lacking. We propose a linear mixed-effects model and estimate the parameters with the Monte Carlo expectation maximization (MCEM) method. Inferences regarding the model parameters and the correlation between the biomarkers are performed by applying Louis's method and the delta method. Simulation studies were conducted to compare the proposed MCEM method with existing methods including the maximum likelihood estimation method, the multiple imputation method, and two widely used ad hoc approaches: replacing the censored values with the detection limit or with half of the detection limit. The results show that the performance of the MCEM with respect to relative bias and coverage probability for the 95% confidence interval is superior to the detection limit and half of the detection limit approaches and exceeds that of the multiple imputation method at medium to high levels of censoring, and the standard error estimates from the MCEM method are close to ideal. The maximum likelihood estimation method can estimate the parameters accurately; however, a nonpositive definite information matrix can occur so that the variances are not estimable. These five methods are illustrated with data from a longitudinal human immunodeficiency virus study to estimate and draw inference on the correlation between human immunodeficiency virus RNA levels measured in plasma and in cervical secretions at multiple time points.
Copyright © 2012 John Wiley & Sons, Ltd.

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Year:  2012        PMID: 22714546      PMCID: PMC3875381          DOI: 10.1002/sim.5371

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  19 in total

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3.  Effect of menstrual cycle on HIV-1 levels in the peripheral blood and genital tract. WHS 001 Study Team.

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4.  Mixed effects models with censored data with application to HIV RNA levels.

Authors:  J P Hughes
Journal:  Biometrics       Date:  1999-06       Impact factor: 2.571

5.  Efficient Hybrid EM for Linear and Nonlinear Mixed Effects Models with Censored Response.

Authors:  Florin Vaida; Anthony P Fitzgerald; Victor Degruttola
Journal:  Comput Stat Data Anal       Date:  2007-08-15       Impact factor: 1.681

6.  Correlation, regression, and repeated data.

Authors:  J M Bland; D G Altman
Journal:  BMJ       Date:  1994-04-02

7.  Random-effects models for longitudinal data.

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Journal:  Biometrics       Date:  1982-12       Impact factor: 2.571

8.  Correlating two viral load assays with known detection limits.

Authors:  R H Lyles; J K Williams; R Chuachoowong
Journal:  Biometrics       Date:  2001-12       Impact factor: 2.571

9.  HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation.

Authors:  Kimdar Sherefa Kemal; Brian Foley; Harold Burger; Kathryn Anastos; Howard Minkoff; Christina Kitchen; Sean M Philpott; Wei Gao; Esther Robison; Susan Holman; Carolyn Dehner; Suzanne Beck; William A Meyer; Alan Landay; Andrea Kovacs; James Bremer; Barbara Weiser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-13       Impact factor: 11.205

10.  Joint modelling of bivariate longitudinal data with informative dropout and left-censoring, with application to the evolution of CD4+ cell count and HIV RNA viral load in response to treatment of HIV infection.

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Journal:  Stat Med       Date:  2005-01-15       Impact factor: 2.373

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  3 in total

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2.  Generalized linear mixed model for binary outcomes when covariates are subject to measurement errors and detection limits.

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Journal:  Stat Med       Date:  2017-10-05       Impact factor: 2.373

3.  Genital tract HIV RNA levels and their associations with human papillomavirus infection and risk of cervical precancer.

Authors:  Jeny Ghartey; Andrea Kovacs; Robert D Burk; L Stewart Massad; Howard Minkoff; Xianhong Xie; Gypsyamber Dʼsouza; Xiaonan Xue; D Heather Watts; Alexandra M Levine; Mark H Einstein; Christine Colie; Kathryn Anastos; Isam-Eldin Eltoum; Betsy C Herold; Joel M Palefsky; Howard D Strickler
Journal:  J Acquir Immune Defic Syndr       Date:  2014-07-01       Impact factor: 3.731

  3 in total

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