Literature DB >> 22711791

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Ian Walsh1, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C E Tosatto, Federico Fogolari.   

Abstract

MOTIVATION: Electrostatic calculations are an important tool for deciphering many functional mechanisms in proteins. Generalized Born (GB) models offer a fast and convenient computational approximation over other implicit solvent-based electrostatic models. Here we present a novel GB-based web server, using the program Bluues, to calculate numerous electrostatic features including pKa-values and surface potentials. The output is organized allowing both experts and beginners to rapidly sift the data. A novel feature of the Bluues server is that it explicitly allows to find electrostatic differences between wild-type and mutant structures. AVAILABILITY: The Bluues server, examples and extensive help files are available for non-commercial use at URL: http://protein.bio.unipd.it/bluues/.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22711791     DOI： 10.1093/bioinformatics/bts343

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  25 in total

1.  Biodistribution of Filamentous Plant Virus Nanoparticles: Pepino Mosaic Virus versus Potato Virus X.

Authors:  Duc H T Le; Eduardo Méndez-López; Chao Wang; Ulrich Commandeur; Miguel A Aranda; Nicole F Steinmetz
Journal:  Biomacromolecules       Date:  2018-12-18       Impact factor: 6.988

2.  Ultrasmall silica nanoparticles directly ligate the T cell receptor complex.

Authors:  Bradley Vis; Rachel E Hewitt; Tom P Monie; Camilla Fairbairn; Suzanne D Turner; Stephen D Kinrade; Jonathan J Powell
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

3.  Ca2+ binding to F-ATP synthase β subunit triggers the mitochondrial permeability transition.

Authors:  Valentina Giorgio; Victoria Burchell; Marco Schiavone; Claudio Bassot; Giovanni Minervini; Valeria Petronilli; Francesco Argenton; Michael Forte; Silvio Tosatto; Giovanna Lippe; Paolo Bernardi
Journal:  EMBO Rep       Date:  2017-05-15       Impact factor: 8.807

4.  Development of Diagnostic Fragment Ion Library for Glycated Peptides of Human Serum Albumin: Targeted Quantification in Prediabetic, Diabetic, and Microalbuminuria Plasma by Parallel Reaction Monitoring, SWATH, and MSE.

Authors:  Arvind M Korwar; Garikapati Vannuruswamy; Mashanipalya G Jagadeeshaprasad; Ramesha H Jayaramaiah; Shweta Bhat; Bhaskaran S Regin; Sureshkumar Ramaswamy; Ashok P Giri; Viswanathan Mohan; Muthuswamy Balasubramanyam; Mahesh J Kulkarni
Journal:  Mol Cell Proteomics       Date:  2015-05-28       Impact factor: 5.911

5.  Phytochemicals from Ayurvedic plants as potential medicaments for ovarian cancer: an in silico analysis.

Authors:  Sahar Qazi; Khalid Raza
Journal:  J Mol Model       Date:  2021-03-25       Impact factor: 1.810

6.  Large protein complex interfaces have evolved to promote cotranslational assembly.

Authors:  Mihaly Badonyi; Joseph A Marsh
Journal:  Elife       Date:  2022-07-28       Impact factor: 8.713

7.  Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification.

Authors:  Phuong Pham; Samir A Afif; Mayuko Shimoda; Kazuhiko Maeda; Nobuo Sakaguchi; Lars C Pedersen; Myron F Goodman
Journal:  DNA Repair (Amst)       Date:  2016-05-13

8.  The clinical spectrum of CASQ1-related myopathy.

Authors:  Claudio Semplicini; Cinzia Bertolin; Luca Bello; Boris Pantic; Francesca Guidolin; Sara Vianello; Francesco Catapano; Irene Colombo; Maurizio Moggio; Bruno F Gavassini; Giovanna Cenacchi; Valentina Papa; Marco Previtero; Chiara Calore; Gianni Sorarù; Giovanni Minervini; Silvio C E Tosatto; Roberto Stramare; Elena Pegoraro
Journal:  Neurology       Date:  2018-09-26       Impact factor: 9.910

9.  Alterations in plasma membrane ion channel structures stimulate NLRP3 inflammasome activation in APOL1 risk milieu.

Authors:  Alok Jha; Vinod Kumar; Shabirul Haque; Kamesh Ayasolla; Shourav Saha; Xiqian Lan; Ashwani Malhotra; Moin A Saleem; Karl Skorecki; Pravin C Singhal
Journal:  FEBS J       Date:  2019-12-02       Impact factor: 5.542

10.  Structure, folding dynamics, and amyloidogenesis of D76N β2-microglobulin: roles of shear flow, hydrophobic surfaces, and α-crystallin.

Authors:  P Patrizia Mangione; Gennaro Esposito; Annalisa Relini; Sara Raimondi; Riccardo Porcari; Sofia Giorgetti; Alessandra Corazza; Federico Fogolari; Amanda Penco; Yuji Goto; Young-Ho Lee; Hisashi Yagi; Ciro Cecconi; Mohsin M Naqvi; Julian D Gillmore; Philip N Hawkins; Fabrizio Chiti; Ranieri Rolandi; Graham W Taylor; Mark B Pepys; Monica Stoppini; Vittorio Bellotti
Journal:  J Biol Chem       Date:  2013-09-06       Impact factor: 5.157
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.