| Literature DB >> 22709801 |
Ana M Palomar1, Paula Santibáñez, David Mazuelas, Lidia Roncero, Sonia Santibáñez, Aránzazu Portillo, José A Oteo.
Abstract
We amplified gene sequences from Anaplasma phagocytophilum, Borrelia garinii, B. valaisiana, B. turdi, Rickettsia monacensis, R. helvetica, R. sibirica sibirica, and Rickettsia spp. (including Candidatus Rickettsia vini) in ticks removed from birds in Spain. The findings support the role of passerine birds as possible dispersers of these tick-borne pathogens.Entities:
Mesh:
Year: 2012 PMID: 22709801 PMCID: PMC3376802 DOI: 10.3201/eid1807.111777
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
PCR primer pairs used in study of the role of birds in dispersal of etiologic agents of tick-borne zoonoses, Spain, 2009*
| Bacteria | Gene target | Primer name | Primer sequence, 5′ → 3′ | Amplified fragment, bp | Annealing temp., °C | Ref. |
|---|---|---|---|---|---|---|
| 16S rRNA, nested | ge3a | CACATGCAAGTCGAACGGATTATTC | 932 | 55 | ( | |
| ge10r | TTCCGTTAAGAAGGAT CTAATCTCC | |||||
| ge9f | AACGGATTATTCTTTATAGCTTGCT | 546 | 55 | ( | ||
| ge2 | GGCAGTATTAAAAGCAGCTCCAGG | |||||
|
| msp3F | CCAGCGTTTAGCAAGATAAGAG | 334 | 56 | ( | |
| msp3R | GCCCAGTAACAACATCATAAGC | |||||
| Outer 1 | AARGAATTGGCAGTTCAATC | 497 | 52 | ( | ||
| Outer 2 | GCATTTTCWATTTTAGCAAGTGATG | |||||
| Inner 1 | ACATATTCAGATGCAGACAGAGGTTCTA | 389 | 55 | ( | ||
| Inner 2 | GAAGGTGCTGTAGCAGGTGCTGGCTGT | |||||
| 5S-23S intergenic spacer, nested | 23SC1 | TAAGCTGACTAATACTAATTACCC | 380 | 52 | ( | |
| 23SN1 | ACCATAGACTCTTATTACTTTGAC | |||||
| 5SCB | GAGAGTAGGTTATTGCCAGGG | 226 | 55 | ( | ||
| 23SN2 | ACCATAGACTCTTATTACTTTGACCA | |||||
| Rr190.70p | ATGGCGAATATTTCTCCAAAA | 631 | 46 | ( | ||
| Rr190.701n | GTTCCGTTAATGGCAGCATCT | |||||
| Rr190.70p | ATGGCGAATATTTCTCCAAAA | 532 | 48 | ( | ||
| Rr190.602n | AGTGCAGCATTCGCTCCCCCT | |||||
| rompB OF | GTAACCGGAAGTAATCGTTTCGTAA | 511 | 54 | ( | ||
| rompB OR | GCTTTATAACCAGCTAAACCACC | |||||
| rompB SFG IF | GTTTAATACGTGCTGCTAACCAA | 420 | 56 | ( | ||
| rompB SFG/TG IR | GGTTTGGCCCATATACCATAAG | |||||
| RpCS.877p | GGGGGCCTGCTCACGGCGG | 381 | 48 | ( | ||
| RpCS1258n | ATTGCAAAAAGTACAGTGAACA | |||||
| RpCS.896p | GGCTAATGAAGCAGTGATAA | 337 | 54 | ( | ||
| RpCS.1233n | GCGACGGTATACCCATAGC |
*Temp., temperature; ref., reference; msp, p44 major surface protein gene; flaB, flagellin gene; ompB, 120-kDa genus common antigen gene; ompA, 190-kDa protein antigen gene; gltA, citrate synthase gene. †R = A/G; W = A/T.
Anaplasma phagocytophilum, Borrelia burgdorferi s.l., and Rickettsia spp. detected in ticks removed from birds, Spain, 2009
| Bacteria | Tick | Bird species (no. specimens) | Gene targets | |
|---|---|---|---|---|
| Species | Stage | |||
|
|
| 1 L |
| |
|
|
| 4 L, 2 N | ||
| 3 L, 4 N | ||||
| 1 L |
| |||
| 1 L | ||||
| 1 L | ||||
|
| 1 F | |||
| 1 L | 5–23S is | |||
|
| 1 L | |||
|
| 1 L | |||
|
| 1 L, 1 N | |||
| 2 L |
| |||
| 1 L, 1 N | ||||
| 1 L | ||||
| 1 L |
| |||
|
|
| 1 F | ||
|
|
| 1 N |
| |
|
|
| 1 N |
| |
|
|
| 1 L |
| |
|
| 1 N, 1 L | |||
|
| 4 L | |||
| 2 N |
| |||
| 1 L |
| |||
|
| 20 N | |||
| 5 L | ||||
|
| 2 L | |||
*L, larva; msp, p44 major surface protein gene; N, nymph; flaB, flagellin gene; 5S-23S is, 5S-23S rRNA intergenic spacer; ompB, 120-kDa genus common antigen gene; ompA, 190-kDa protein antigen gene; gltA, citrate synthase gene. †Same identity with >1 validly published Rickettsia species.
FigureThe phylogenetic position of Candidatus Rickettsia vini based on the ompA nucleotide sequences in a study of the role of birds in dispersal of etiologic agents of tick-borne zoonoses, Spain, 2009. The evolutionary history was inferred by using the neighbor-joining method. The optimal tree with the sum of branch length = 1.09961140 is shown. The percentage of replicate trees in which the associated taxa clustered in the bootstrap test (1,000 replicates) is shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed by using the Kimura 2-parameter method and are in the units of the number of base substitutions per site. Codon positions included were 1st+2nd+3rd+Noncoding. All positions containing gaps and missing data were eliminated from the dataset. A total of 563 positions were in the final dataset. Phylogenetic analyses were conducted in MEGA4 (16 in Technical Appendix).