| Literature DB >> 22709783 |
Soumitra Roy1, Arbansjit Sandhu, Angelica Medina, David S Clawson, James M Wilson.
Abstract
Adenoviruses can cause infectious diarrheal disease or respiratory infections in humans; 2 recent reports have indicated probable human infection with simian adenoviruses (SAdVs). To assess the possibility of animal-to-human transmission of SAdVs, we tested fecal samples from asymptomatic rhesus macaques housed in 5 primate facilities in the United States and cultured 23 SAdV isolates. Of these, 9 were purified and completely sequenced; 3 SAdV samples from the American Type Culture Collection (SAdV-6, SAdV-18, and SAdV-20) were also completely sequenced. The sequence of SAdV-18 was closely related to that of human adenovirus F across the whole genome, and the new isolates were found to harbor 2 fiber genes similar to those of human adenovirus (HAdV) strains HAdV-40 and HAdV-41, which can cause infectious diarrhea. The high prevalence of adenoviruses in fecal samples from asymptomatic rhesus macaques and the similarity of the isolates to human strains indicates the possibility of animal-to-human transmission of SAdVs.Entities:
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Year: 2012 PMID: 22709783 PMCID: PMC3376797 DOI: 10.3201/eid1807.111665
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Characterization of adenovirus isolates from rhesus fecal samples obtained from primate facilities in the United States*
| Isolate | Source† | Particle titer | Total yield | Sequence analysis |
|---|---|---|---|---|
| A1123 | ONPRC | 4.0 × 1011 | 9.6 × 1011 | Hexon similar to SAdV-3 |
| A1128 | Covance | 6.0 × 1011 | 1.3 × 1012 | Hexon similar to SAdV-3 |
| A1129 | Covance | 6.1 × 1011 | 3.8 × 1013 | Hexon (A1128) |
|
| Covance | 4.7 × 1012 | 1.8 × 1012 | Full genome |
| A1161 | Covance | 2.0 × 1012 | 4.3 × 1013 | Hexon similar to SAdV-48 |
|
| Covance | 5.4 × 1012 | 5.4 × 1012 | Full genome |
| A1166 | Covance | 2.8 × 1012 | 1.3 × 1011 | Hexon (A1161) |
| A1169 | Covance | 1.1 × 1011 | 2.5 × 1013 | Hexon (A1161) |
|
| Covance | 5.2 × 1012 | 2.3 × 1012 | Full genome |
| A1179 | Covance | 4.6 × 1012 | 1.0 × 1013 | Hexon (A1128) |
|
| GTP | 1.8 × 1012 | 2.6 × 1012 | Full genome |
| A1261 | GTP | 8.7 × 1011 | 9.0 × 1012 | Hexon (A1285) |
|
| GTP | 2.7 × 1012 | 2.0 × 1013 | Full genome |
|
| Covance | 5.4 × 1012 | 7.3 × 1011 | Full genome |
| A1297 | Covance | 3.7 × 1011 | 7.0 × 1011 | Hexon (A1163) |
|
| Covance | 6.1 × 1011 | 8.4 × 1011 | Full genome |
| A1313 | TNPRC | 6.5 × 1011 | 1.4 × 1013 | Hexon similar to A1312 |
|
| TNPRC | 2.4 × 1012 | 1.0 × 1012 | Full genome |
| A1328 | NEPRC | 6.7 × 1011 | 2.7 × 1012 | Hexon similar to SAdV-49 |
| A1329 | TNPRC | 3.7 × 1012 | 9.2 × 1012 | Hexon (A1312) |
|
| NEPRC | 6.0 × 1012 | 2.8 × 1013 | Full genome |
| A1339 | TNPRC | 3.1 × 1012 | 5.7 × 1012 | Hexon (A1163) |
| A1340 | Covance | 5.1 × 1012 | 3.1 × 1013 | Hexon (A1335) |
*The total yield and the particle titer obtained from a 50-plate (150-mm) preparation are shown. In each case, the hexon region was PCR amplified and sequenced. Boldface indicates the 9 isolates that were completely sequenced. For the other isolates, the hexon sequences that are identical or very closely related (<5% nucleotide sequence dissimilarity) are indicated in parentheses. SAdV, simian adenovirus. † ONPRC, Oregon National Primate Research Center (Beaverton, OR, USA); Covance, Covance, (Vienna, VA, USA); GTP, primate facility of the Gene Therapy Program at the University of Pennsylvania (Philadelphia, PA, USA); TNPRC, Tulane National Primate Research Center (Covington, LA, USA); NEPRC, New England Primate Research Center (Southborough, MA, USA).
Figure 1Phylogenetic trees of the genes coding for A) DNA polymerase, B) E4 34K, C) E1a, and D) hexons of macaque adenoviruses identified in study of prevalence of adenoviruses in fecal samples from rhesus macaques, United States. Members of the human adenovirus (HAdV) species HAdV-A (HAdV-12), HAdV-G, and HAdV-F that are thought to have the closest phylogenetic proximity to macaque adenoviruses are included for comparison. Branch support values are indicated. Simian adenoviruses (SAdV) SAdV-1 and SAdV-7 have been grouped together with HAdV-52 into HAdV-G; the other macaque adenoviruses (except for SAdV-18, SAdV-20, and the titi monkey adenovirus) have been grouped into SAdV-A and SAdV-B. SAdV-18 is seen to be closely related to HAdV-F (HAdV-40 and HAdV-41) in all the trees. Scale bars indicate number of substitutions per site.
E3 region proteins of the 11 macaque adenoviruses belonging to SAdV-B isolates from macaque fecal samples compared with the E3 regions of other macaque adenoviruses*
| Adenovirus type | 12.5K | CR1-α | CR1-β | RID-α, RID-β, and 14.7K |
|---|---|---|---|---|
| SAdV-A | ||||
| SAdV-3 | Present | Present | Present | Present |
| SAdV-6 | Present | Present | Present | Present |
| SAdV-48 | Present | Present | Present | Present |
| SAdV-B | ||||
| A1173 | Present | Present | Present | Present |
| A1285 | Present | Present | Present | Present |
| A1312 | Present | Present | Present | Present |
| A1139 | Present | Fused† | Present | |
| A1163 | Present | Fused† | Present | |
| A1258 | Present | Fused† | Present | |
| A1296 | Present | Fused† | Present | |
| A1327 | Present | Fused† | Present | |
| A1335 | Present | Fused† | Present | |
| SAdV-49 | Present | Fused† | Present | |
| SAdV-50 | Present | Fused† | Present | |
| HAdV-G | ||||
| SAdV-1 | Present | Present | Present | Present |
| HAdV-52 | Present | Present | Present | Present |
| SAdV-7 | Present | Not present | Not present | Not present |
| Not yet classified | ||||
| SAdV-18 | Present | Not present | Not present | Not present |
| SAdV-20 | Present | Present | Present | Present |
*SAdV, simian adenovirus; HAdV, human adenovirus. †Some members of SAdV-B were found to have a novel configuration in which 2 CR1 proteins were fused into a single open reading frame (see Figure 2, Figure 3).
Figure 2Open reading frames (ORFs) in the right ends of the genomes of 2 macaque adenovirus isolates identified in study of prevalence of adenoviruses in fecal samples from rhesus macaques, United States. A) Isolate A1312 right end (9,606 bp); B) isolate A1139 right end (9,591 bp). ORFs for the E3 proteins CR1-α and CR1-β are present in A1312 but have been combined into a single ORF in A1139. The 2 fiber genes, in which a long fiber protein (fiber 1) is followed by a shorter fiber protein (fiber 2), are also shown. ITR, inverted terminal repeat.
Figure 3Sequence alignments of a subset of simian adenovirus type B (SAdV-B) isolates identified in study of prevalence of adenoviruses in fecal samples from rhesus macaques, United States. The putative fused E3 CR1-αβ protein from isolate A1139 (see Table 2) and the corresponding separately encoded CR1-α and CR1-β proteins from isolate A1312 are shown. The N-terminal (N) and C-terminal (C) sections of the fused A1139 CR1-αβ proteins have been separately aligned with the A1312 CR1-α and CR1-β proteins, respectively. Gray shading indicates homologous regions, red font indicates identical residues, and underlining indicates hydrophobic regions.
Figure 4Neighbor-joining alignment of amino acid sequences for the fiber knob domains of macaque adenoviruses (5 representative members of simian adenovirus type B [SAdV-B]) and representative members from each human adenovirus (HAdV) species, with bootstrapping at 1,000 replicates. Alignment was performed by using CLC Bio version 6.1 software (CLC Bio, Aarhus, Denmark). Bootstrap values (percentages) are indicated on the nodes. SAdV-1 and SAdV-7 have been grouped together with HAdV-52 into HAdV-G; the other macaque adenoviruses (except for SAdV-18, SAdV-20, and the titi monkey adenovirus) have been grouped into SAdV-A and SAdV-B. Scale bar indicates number of substitutions per site.
Figure 5Sequence alignments of the amino acid sequences of human adenovirus (HAdV) 40 long fiber (fiber 2) with simian adenovirus (SAdV) 18 fiber (upper lines) and HAdV-40 short fiber (fiber 1) with macaque adenovirus isolate A1173 (lower lines). Gray shading indicates homologous regions, red font indicates identical residues, underlining indicates N-terminal 30 residues that constitute the tail, and boxes indicate C-terminal knob domains. Intervening shaft domains harboring varying numbers of the ≈16-residue β-spiral repeat sequences are separated by asterisks and numbered sequentially.