Literature DB >> 22706378

Rare TP53 genetic variant associated with glioma risk and outcome.

Kathleen M Egan1, L Burton Nabors, Jeffrey J Olson, Alvaro N Monteiro, James E Browning, Melissa H Madden, Reid C Thompson.   

Abstract

Validation of a recent finding linking a rare variant in TP53 to the risk of glioma, the most common primary brain tumour, is reported here. This study genotyped the single nucleotide polymorphism (SNP) rs78378222 in 566 glioma cases and 603 controls. The variant 'C' allele (with an allelic frequency of 1.1% in controls) was associated with a 3.5-fold excess in glioma risk (odds ratio 3.54; p=0.0001). Variant carriers had significantly improved survival (hazard ratio 0.52; p=0.009) when compared to non-carriers. The rs78378222 SNP is the first confirmed rare susceptibility variant in glioma. Results may shed light on the aetiology and progression of these tumours.

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Year:  2012        PMID: 22706378      PMCID: PMC3576847          DOI: 10.1136/jmedgenet-2012-100941

Source DB:  PubMed          Journal:  J Med Genet        ISSN: 0022-2593            Impact factor:   6.318


  6 in total

1.  A germline variant in the TP53 polyadenylation signal confers cancer susceptibility.

Authors:  Simon N Stacey; Patrick Sulem; Aslaug Jonasdottir; Gisli Masson; Julius Gudmundsson; Daniel F Gudbjartsson; Olafur T Magnusson; Sigurjon A Gudjonsson; Bardur Sigurgeirsson; Kristin Thorisdottir; Rafn Ragnarsson; Kristrun R Benediktsdottir; Bjørn A Nexø; Anne Tjønneland; Kim Overvad; Peter Rudnai; Eugene Gurzau; Kvetoslava Koppova; Kari Hemminki; Cristina Corredera; Victoria Fuentelsaz; Pilar Grasa; Sebastian Navarrete; Fernando Fuertes; Maria D García-Prats; Enrique Sanambrosio; Angeles Panadero; Ana De Juan; Almudena Garcia; Fernando Rivera; Dolores Planelles; Virtudes Soriano; Celia Requena; Katja K Aben; Michelle M van Rossum; Ruben G H M Cremers; Inge M van Oort; Dick-Johan van Spronsen; Jack A Schalken; Wilbert H M Peters; Brian T Helfand; Jenny L Donovan; Freddie C Hamdy; Daniel Badescu; Ovidiu Codreanu; Mariana Jinga; Irma E Csiki; Vali Constantinescu; Paula Badea; Ioan N Mates; Daniela E Dinu; Adrian Constantin; Dana Mates; Sjofn Kristjansdottir; Bjarni A Agnarsson; Eirikur Jonsson; Rosa B Barkardottir; Gudmundur V Einarsson; Fridbjorn Sigurdsson; Pall H Moller; Tryggvi Stefansson; Trausti Valdimarsson; Oskar T Johannsson; Helgi Sigurdsson; Thorvaldur Jonsson; Jon G Jonasson; Laufey Tryggvadottir; Terri Rice; Helen M Hansen; Yuanyuan Xiao; Daniel H Lachance; Brian Patrick O Neill; Matthew L Kosel; Paul A Decker; Gudmar Thorleifsson; Hrefna Johannsdottir; Hafdis T Helgadottir; Asgeir Sigurdsson; Valgerdur Steinthorsdottir; Annika Lindblom; Robert S Sandler; Temitope O Keku; Karina Banasik; Torben Jørgensen; Daniel R Witte; Torben Hansen; Oluf Pedersen; Viorel Jinga; David E Neal; William J Catalona; Margaret Wrensch; John Wiencke; Robert B Jenkins; Eduardo Nagore; Ulla Vogel; Lambertus A Kiemeney; Rajiv Kumar; José I Mayordomo; Jon H Olafsson; Augustine Kong; Unnur Thorsteinsdottir; Thorunn Rafnar; Kari Stefansson
Journal:  Nat Genet       Date:  2011-09-25       Impact factor: 38.330

2.  Cancer susceptibility variants and the risk of adult glioma in a US case-control study.

Authors:  Kathleen M Egan; Reid C Thompson; L B Nabors; Jeffrey J Olson; Daniel J Brat; Renato V Larocca; Steven Brem; Paul L Moots; Melissa H Madden; James E Browning; Y Ann Chen
Journal:  J Neurooncol       Date:  2011-01-04       Impact factor: 4.130

Review 3.  Evolutionary evidence of the effect of rare variants on disease etiology.

Authors:  I P Gorlov; O Y Gorlova; M L Frazier; M R Spitz; C I Amos
Journal:  Clin Genet       Date:  2010-09-10       Impact factor: 4.438

Review 4.  Rare genetic variants and the risk of cancer.

Authors:  Walter Bodmer; Ian Tomlinson
Journal:  Curr Opin Genet Dev       Date:  2010-06       Impact factor: 5.578

5.  Rare variants create synthetic genome-wide associations.

Authors:  Samuel P Dickson; Kai Wang; Ian Krantz; Hakon Hakonarson; David B Goldstein
Journal:  PLoS Biol       Date:  2010-01-26       Impact factor: 8.029

6.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

  6 in total
  20 in total

1.  Further Confirmation of Germline Glioma Risk Variant rs78378222 in TP53 and Its Implication in Tumor Tissues via Integrative Analysis of TCGA Data.

Authors:  Zhaoming Wang; Preetha Rajaraman; Beatrice S Melin; Charles C Chung; Weijia Zhang; Roberta McKean-Cowdin; Dominique Michaud; Meredith Yeager; Anders Ahlbom; Demetrius Albanes; Ulrika Andersson; Laura E Beane Freeman; Julie E Buring; Mary Ann Butler; Tania Carreón; Maria Feychting; Susan M Gapstur; J Michael Gaziano; Graham G Giles; Goran Hallmans; Roger Henriksson; Judith Hoffman-Bolton; Peter D Inskip; Cari M Kitahara; Loic Le Marchand; Martha S Linet; Shengchao Li; Ulrike Peters; Mark P Purdue; Nathaniel Rothman; Avima M Ruder; Howard D Sesso; Gianluca Severi; Meir Stampfer; Victoria L Stevens; Kala Visvanathan; Sophia S Wang; Emily White; Anne Zeleniuch-Jacquotte; Robert Hoover; Joseph F Fraumeni; Nilanjan Chatterjee; Patricia Hartge; Stephen J Chanock
Journal:  Hum Mutat       Date:  2015-05-18       Impact factor: 4.878

Review 2.  The epidemiology of glioma in adults: a "state of the science" review.

Authors:  Quinn T Ostrom; Luc Bauchet; Faith G Davis; Isabelle Deltour; James L Fisher; Chelsea Eastman Langer; Melike Pekmezci; Judith A Schwartzbaum; Michelle C Turner; Kyle M Walsh; Margaret R Wrensch; Jill S Barnholtz-Sloan
Journal:  Neuro Oncol       Date:  2014-07       Impact factor: 12.300

3.  Bioinformatics analysis reveals potential candidate drugs for different subtypes of glioma.

Authors:  Xianzhen Chen; Weidong Zang; Fei Xue; Zhaoli Shen; Quanbin Zhang
Journal:  Neurol Sci       Date:  2012-09-30       Impact factor: 3.307

Review 4.  Association between DNA repair gene polymorphisms and risk of glioma: a systematic review and meta-analysis.

Authors:  Maral Adel Fahmideh; Judith Schwartzbaum; Paolo Frumento; Maria Feychting
Journal:  Neuro Oncol       Date:  2014-02-04       Impact factor: 12.300

5.  Rare and uncommon genetic variants may hold key to the 'missing heritability' in glioma.

Authors:  Kathleen M Egan; Margaret R Wrensch; Robert B Jenkins
Journal:  CNS Oncol       Date:  2012-11

6.  Novel genetic variants of SYK and ITGA1 related lymphangiogenesis signaling pathway predict non-small cell lung cancer survival.

Authors:  Lihua Liu; Hongliang Liu; Sheng Luo; Edward F Patz; Carolyn Glass; Li Su; Lijuan Lin; David C Christiani; Qingyi Wei
Journal:  Am J Cancer Res       Date:  2020-08-01       Impact factor: 6.166

7.  Survival and low-grade glioma: the emergence of genetic information.

Authors:  Elizabeth B Claus; Kyle M Walsh; John K Wiencke; Annette M Molinaro; Joseph L Wiemels; Joellen M Schildkraut; Melissa L Bondy; Mitchel Berger; Robert Jenkins; Margaret Wrensch
Journal:  Neurosurg Focus       Date:  2015-01       Impact factor: 4.047

8.  Anthropometric factors in relation to risk of glioma.

Authors:  Rebecca B Little; Melissa H Madden; Reid C Thompson; Jeffrey J Olson; Renato V Larocca; Edward Pan; James E Browning; Kathleen M Egan; L Burton Nabors
Journal:  Cancer Causes Control       Date:  2013-03-03       Impact factor: 2.506

Review 9.  Genome-Wide Association Studies in Glioma.

Authors:  Ben Kinnersley; Richard S Houlston; Melissa L Bondy
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2018-01-30       Impact factor: 4.254

Review 10.  The dichotomy of p53 regulation by noncoding RNAs.

Authors:  Qipan Deng; Lindsey Becker; Xiaodong Ma; Xiaoming Zhong; Ken Young; Kenneth Ramos; Yong Li
Journal:  J Mol Cell Biol       Date:  2014-04-04       Impact factor: 6.216

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